Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0018651

Physical Location & Seq

Genomic Coordinates Reverse (-)

48156284 .. 48156487

Gene Structure 204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG285300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGACGAGAGCGGGAAACCGCTGTCGGTGATCCTGGCCATCATTGTGGTTTGGTTTATGGAGAGAGTGTCGTTTATGCTGGTGGAGTTGTCGGTCGAGACTGAAGTGAATGCCTCGCCGGAGGCTAAGGCGGCGCAGCACGAGGTAAGGGGAGAGAATGGGGGGATTCTGGCGGTGGAGATGGCGCTGAGGTTGATGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016422 GO:0016556 GO:0016604 GO:0016607 GO:0016740 GO:0016741 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0036396 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045293 GO:0046483 GO:0070013 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MT-A70

Protein Analysis

67

Amino Acids

7.31

Weight (kDa)

4.6

Isoelectric Point (pI)

29.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018651)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003165
rosa_multiflora	Rmu_sc0000284.1_g000030
rosa_roxburghii	Rroxscaffold_6G00387910
rosa_samantha	Rh1AG022400 Rh2CG255500 Rh2DG023100 Rh3CG251400 Rh6AG285300 Rh7AG388100 Rh7CG174800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	12
AciI	CCGC	4 cut(s)	12, 20, 131, 173
AclWI	GGATC	1 cut(s)	25
AcoI	YGGCCR	1 cut(s)	36
AcuI	CTGAAG	1 cut(s)	123
AjnI	CCWGG	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	1 cut(s)	25
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	136
AspLEI	GCGC	2 cut(s)	136, 187
AsuHPI	GGTGA	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	38
BauI	CACGAG	1 cut(s)	140
BbvCI	CCTCAGC	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	3 cut(s)	47, 175, 190
BciT130I	CCWGG	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	92
BfoI	RGCGCY	1 cut(s)	188
BisI	GCNGC	2 cut(s)	132, 137
BlsI	GCNGC	2 cut(s)	133, 138
Bme1390I	CCNGG	1 cut(s)	35
BmrFI	CCNGG	1 cut(s)	35
Bpu10I	CCTNAGC	2 cut(s)	126, 188
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
BseBI	CCWGG	1 cut(s)	35
BseMII	CTCAG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	148
Bsh1285I	CGRYCG	1 cut(s)	96
BshFI	GGCC	1 cut(s)	38
BsiEI	CGRYCG	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	119
BsmAI	GTCTC	1 cut(s)	92
BsmI	GAATGC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	4 cut(s)	12, 20, 131, 173
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	1 cut(s)	180
BspPI	GGATC	1 cut(s)	25
BsrBI	CCGCTC	1 cut(s)	12
BssMI	GATC	1 cut(s)	30
BssSI	CACGAG	1 cut(s)	140
Bst2BI	CACGAG	1 cut(s)	140
Bst2UI	CCWGG	1 cut(s)	35
BstDEI	CTNAG	2 cut(s)	126, 188
BstH2I	RGCGCY	1 cut(s)	188
BstHHI	GCGC	2 cut(s)	136, 187
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	30
BstMCI	CGRYCG	1 cut(s)	96
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	148
BstXI	CCANNNNNNTGG	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	38
CfoI	GCGC	2 cut(s)	136, 187
CviJI	RGCY	2 cut(s)	38, 125
CviKI_1	RGCY	2 cut(s)	38, 125
DdeI	CTNAG	2 cut(s)	126, 188
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
EaeI	YGGCCR	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	33
FaiI	YATR	3 cut(s)	59, 77, 202
FauI	CCCGC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	132, 137
Fsp4HI	GCNGC	2 cut(s)	132, 137
GlaI	GCGC	2 cut(s)	135, 186
GluI	GCNGC	2 cut(s)	132, 137
HaeII	RGCGCY	1 cut(s)	188
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	1 cut(s)	119
HhaI	GCGC	2 cut(s)	136, 187
Hin6I	GCGC	2 cut(s)	134, 185
HinP1I	GCGC	2 cut(s)	134, 185
HinfI	GANTC	1 cut(s)	166
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	1 cut(s)	40
Hpy188III	TCNNGA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	2 cut(s)	126, 188
HspAI	GCGC	2 cut(s)	134, 185
Kzo9I	GATC	1 cut(s)	30
LpnPI	CCDG	5 cut(s)	20, 47, 65, 132, 155
Lsp1109I	GCAGC	1 cut(s)	148
MalI	GATC	1 cut(s)	32
MbiI	CCGCTC	1 cut(s)	12
MboI	GATC	1 cut(s)	30
MlsI	TGGCCA	1 cut(s)	38
MluNI	TGGCCA	1 cut(s)	38
MnlI	CCTC	4 cut(s)	115, 124, 136, 183
Mox20I	TGGCCA	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	44
Msp20I	TGGCCA	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	22
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	35
Mva1269I	GAATGC	1 cut(s)	115
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeII	GATC	1 cut(s)	30
PctI	GAATGC	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	166
PkrI	GCNGC	2 cut(s)	133, 138
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
RseI	CAYNNNNRTG	1 cut(s)	44
SatI	GCNGC	2 cut(s)	132, 137
Sau3AI	GATC	1 cut(s)	30
ScrFI	CCNGG	1 cut(s)	35
SetI	ASST	2 cut(s)	147, 194
SmiMI	CAYNNNNRTG	1 cut(s)	44
SsiI	CCGC	4 cut(s)	12, 20, 131, 173
StyD4I	CCNGG	1 cut(s)	33
TaqI	TCGA	1 cut(s)	96
TaqII	GACCGA	1 cut(s)	82
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.