Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000284.1

Orthogroup ID

OG0018651

Physical Location & Seq

Genomic Coordinates Forward (+)

120233 .. 121191

Gene Structure 959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000284.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgatgaccaccatattcaaagctcacaatctcctaggctacgttgacggctccatcacgcctccggagaaccgatggctgcgagtctgggttgctgcgaacataatctccaagcatatgtcctctaacccgaaatcaaaatctggctactcttcgataacgcctagctttgcacatcacttcccaaattctgaattctggtgtacccgaggtcgacgaacgaccaaatcgataccagagggatgtcgccgcctccccgaaagccctaacctttctcccaaaccagacccgacccaagaccctaccttagatttcagcttcatggacgagagcgggaacccgctgtcggtgatcctggccatcattgtggtttggtttatggagagagtgtcgtttatgctggtggagttgtcagagctgctgaagcagctcgagactgaagtgaaggcctcgcaggaggctaaggtggcgcagcgcgaggtggggggagagaatggggggattctggcgatggagatggcgctgaggttgatggcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016422 GO:0016556 GO:0016604 GO:0016607 GO:0016740 GO:0016741 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0036396 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045293 GO:0046483 GO:0070013 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MT-A70

Protein Analysis

179

Amino Acids

20.04

Weight (kDa)

6.91

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018651)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003165
rosa_multiflora	Rmu_sc0000284.1_g000030
rosa_roxburghii	Rroxscaffold_6G00387910
rosa_samantha	Rh1AG022400 Rh2CG255500 Rh2DG023100 Rh3CG251400 Rh6AG285300 Rh7AG388100 Rh7CG174800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	333
AccI	GTMKAC	1 cut(s)	214
AccII	CGCG	1 cut(s)	477
AccIII	TCCGGA	1 cut(s)	64
AciI	CCGC	3 cut(s)	250, 333, 341
AclWI	GGATC	1 cut(s)	346
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	2 cut(s)	187, 194
AcuI	CTGAAG	2 cut(s)	443, 459
AfaI	GTAC	1 cut(s)	205
AfiI	CCNNNNNNNGG	1 cut(s)	346
AgsI	TTSAA	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	354
AloI	GAACNNNNNNTCC	2 cut(s)	92, 124
AluBI	AGCT	5 cut(s)	23, 168, 318, 418, 430
AluI	AGCT	5 cut(s)	23, 168, 318, 418, 430
Alw26I	GTCTC	1 cut(s)	428
AlwI	GGATC	1 cut(s)	346
Ama87I	CYCGRG	2 cut(s)	207, 431
Aor13HI	TCCGGA	1 cut(s)	64
AoxI	GGCC	2 cut(s)	357, 447
ApeKI	GCWGC	5 cut(s)	79, 95, 418, 427, 472
ApoI	RAATTY	2 cut(s)	187, 194
AspA2I	CCTAGG	1 cut(s)	34
AspLEI	GCGC	3 cut(s)	472, 477, 523
AsuHPI	GGTGA	1 cut(s)	361
AvaI	CYCGRG	2 cut(s)	207, 431
AvrII	CCTAGG	1 cut(s)	34
BalI	TGGCCA	1 cut(s)	359
BbvCI	CCTCAGC	1 cut(s)	524
BbvI	GCAGC	5 cut(s)	66, 82, 405, 439, 484
BccI	CCATC	6 cut(s)	62, 69, 368, 505, 511, 526
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	356
BcoDI	GTCTC	1 cut(s)	428
BfaI	CTAG	2 cut(s)	35, 165
BfoI	RGCGCY	1 cut(s)	524
BisI	GCNGC	6 cut(s)	80, 96, 250, 419, 428, 473
BlnI	CCTAGG	1 cut(s)	34
BlsI	GCNGC	6 cut(s)	81, 97, 251, 420, 429, 474
Bme1390I	CCNGG	1 cut(s)	356
BmeT110I	CYCGRG	2 cut(s)	207, 431
BmiI	GGNNCC	2 cut(s)	52, 338
BmrFI	CCNGG	1 cut(s)	356
Bpu10I	CCTNAGC	2 cut(s)	462, 524
Bsa29I	ATCGAT	1 cut(s)	230
BsaJI	CCNNGG	2 cut(s)	34, 208
BsaWI	WCCGGW	1 cut(s)	64
BsaXI	ACNNNNNCTCC	4 cut(s)	92, 122, 374, 404
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
BseAI	TCCGGA	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	356
BseCI	ATCGAT	1 cut(s)	230
BseDI	CCNNGG	2 cut(s)	34, 208
BseGI	GGATG	1 cut(s)	248
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseMII	CTCAG	1 cut(s)	515
BseXI	GCAGC	5 cut(s)	66, 82, 405, 439, 484
Bsh1236I	CGCG	1 cut(s)	477
BshFI	GGCC	2 cut(s)	359, 449
BshVI	ATCGAT	1 cut(s)	230
BsiHKCI	CYCGRG	2 cut(s)	207, 431
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	346
BsmAI	GTCTC	1 cut(s)	428
BsnI	GGCC	2 cut(s)	359, 449
BsoBI	CYCGRG	2 cut(s)	207, 431
Bsp13I	TCCGGA	1 cut(s)	64
Bsp143I	GATC	1 cut(s)	351
BspACI	CCGC	3 cut(s)	250, 333, 341
BspANI	GGCC	2 cut(s)	359, 449
BspCNI	CTCAG	1 cut(s)	516
BspDI	ATCGAT	1 cut(s)	230
BspEI	TCCGGA	1 cut(s)	64
BspFNI	CGCG	1 cut(s)	477
BspLI	GGNNCC	2 cut(s)	52, 338
BspPI	GGATC	1 cut(s)	346
BsrBI	CCGCTC	1 cut(s)	333
BssECI	CCNNGG	2 cut(s)	34, 208
BssMI	GATC	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	34
Bst2UI	CCWGG	1 cut(s)	356
Bst6I	CTCTTC	1 cut(s)	157
BstDEI	CTNAG	3 cut(s)	307, 462, 524
BstF5I	GGATG	1 cut(s)	248
BstFNI	CGCG	1 cut(s)	477
BstH2I	RGCGCY	1 cut(s)	524
BstHHI	GCGC	3 cut(s)	472, 477, 523
BstKTI	GATC	1 cut(s)	354
BstMAI	GTCTC	1 cut(s)	428
BstMBI	GATC	1 cut(s)	351
BstMWI	GCNNNNNNNGC	3 cut(s)	424, 427, 467
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	354
BstUI	CGCG	1 cut(s)	477
BstV1I	GCAGC	5 cut(s)	66, 82, 405, 439, 484
BstXI	CCANNNNNNTGG	1 cut(s)	367
Bsu15I	ATCGAT	1 cut(s)	230
BsuRI	GGCC	2 cut(s)	359, 449
BsuTUI	ATCGAT	1 cut(s)	230
BtgZI	GCGATG	1 cut(s)	524
BtsCI	GGATG	1 cut(s)	248
CfoI	GCGC	3 cut(s)	472, 477, 523
ClaI	ATCGAT	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	204
CviAII	CATG	1 cut(s)	322
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	3 cut(s)	307, 462, 524
DpnI	GATC	1 cut(s)	353
DpnII	GATC	1 cut(s)	351
EaeI	YGGCCR	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	34
Eco147I	AGGCCT	1 cut(s)	449
Eco57I	CTGAAG	2 cut(s)	443, 459
Eco88I	CYCGRG	2 cut(s)	207, 431
EcoRI	GAATTC	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	354
EcoT14I	CCWWGG	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	34
FaeI	CATG	1 cut(s)	325
FaiI	YATR	8 cut(s)	14, 104, 117, 119, 323, 380, 398, 538
FatI	CATG	1 cut(s)	321
FauI	CCCGC	2 cut(s)	326, 348
FauNDI	CATATG	1 cut(s)	117
FblI	GTMKAC	1 cut(s)	214
Fnu4HI	GCNGC	6 cut(s)	80, 96, 250, 419, 428, 473
FokI	GGATG	1 cut(s)	255
Fsp4HI	GCNGC	6 cut(s)	80, 96, 250, 419, 428, 473
FspBI	CTAG	2 cut(s)	35, 165
GlaI	GCGC	3 cut(s)	471, 476, 522
GluI	GCNGC	6 cut(s)	80, 96, 250, 419, 428, 473
HaeII	RGCGCY	1 cut(s)	524
HaeIII	GGCC	2 cut(s)	359, 449
HapII	CCGG	1 cut(s)	65
HhaI	GCGC	3 cut(s)	472, 477, 523
Hin1II	CATG	1 cut(s)	325
Hin6I	GCGC	3 cut(s)	470, 475, 521
HinP1I	GCGC	3 cut(s)	470, 475, 521
HincII	GTYRAC	2 cut(s)	46, 215
HindII	GTYRAC	2 cut(s)	46, 215
HinfI	GANTC	2 cut(s)	84, 502
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	1 cut(s)	361
Hpy166II	GTNNAC	3 cut(s)	46, 204, 215
Hpy188I	TCNGA	2 cut(s)	193, 415
Hpy188III	TCNNGA	2 cut(s)	65, 433
Hpy8I	GTNNAC	3 cut(s)	46, 204, 215
Hpy99I	CGWCG	1 cut(s)	219
HpyAV	CCTTC	1 cut(s)	439
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	1 cut(s)	173
HpyF10VI	GCNNNNNNNGC	3 cut(s)	424, 427, 467
HpyF3I	CTNAG	3 cut(s)	307, 462, 524
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	325
HspAI	GCGC	3 cut(s)	470, 475, 521
Kpn2I	TCCGGA	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	351
LmnI	GCTCC	1 cut(s)	56
Lsp1109I	GCAGC	5 cut(s)	66, 82, 405, 439, 484
MaeI	CTAG	2 cut(s)	35, 165
MaeII	ACGT	1 cut(s)	42
MalI	GATC	1 cut(s)	353
MbiI	CCGCTC	1 cut(s)	333
MboI	GATC	1 cut(s)	351
MboII	GAAGA	1 cut(s)	144
MlsI	TGGCCA	1 cut(s)	359
MluCI	AATT	2 cut(s)	187, 194
MluNI	TGGCCA	1 cut(s)	359
MlyI	GAGTC	1 cut(s)	93
MnlI	CCTC	9 cut(s)	72, 133, 203, 232, 263, 451, 460, 472, 519
Mox20I	TGGCCA	1 cut(s)	359
MroI	TCCGGA	1 cut(s)	64
MscI	TGGCCA	1 cut(s)	359
MslI	CAYNNNNRTG	1 cut(s)	365
Msp20I	TGGCCA	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	343
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	356
MteI	GCGCNGCGC	1 cut(s)	473
MvaI	CCWGG	1 cut(s)	356
MvnI	CGCG	1 cut(s)	477
MwoI	GCNNNNNNNGC	3 cut(s)	424, 427, 467
NdeI	CATATG	1 cut(s)	117
NdeII	GATC	1 cut(s)	351
NlaIII	CATG	1 cut(s)	325
NlaIV	GGNNCC	2 cut(s)	52, 338
PaeR7I	CTCGAG	1 cut(s)	431
PceI	AGGCCT	1 cut(s)	449
PcsI	WCGNNNNNNNCGW	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	502
PkrI	GCNGC	6 cut(s)	81, 97, 251, 420, 429, 474
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	52, 338
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
RseI	CAYNNNNRTG	1 cut(s)	365
SalI	GTCGAC	1 cut(s)	213
SatI	GCNGC	6 cut(s)	80, 96, 250, 419, 428, 473
Sau3AI	GATC	1 cut(s)	351
SchI	GAGTC	1 cut(s)	93
ScrFI	CCNGG	1 cut(s)	356
Sfr274I	CTCGAG	1 cut(s)	431
SlaI	CTCGAG	1 cut(s)	431
SmiMI	CAYNNNNRTG	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	2 cut(s)	187, 194
SseBI	AGGCCT	1 cut(s)	449
SsiI	CCGC	3 cut(s)	250, 333, 341
SspMI	CTAG	2 cut(s)	35, 165
StuI	AGGCCT	1 cut(s)	449
StyD4I	CCNGG	1 cut(s)	354
StyI	CCWWGG	1 cut(s)	34
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	4 cut(s)	155, 214, 230, 432
TasI	AATT	2 cut(s)	187, 194
TauI	GCSGC	1 cut(s)	252
TfiI	GAWTC	1 cut(s)	502
TseI	GCWGC	5 cut(s)	79, 95, 418, 427, 472
TspDTI	ATGAA	1 cut(s)	310
XapI	RAATTY	2 cut(s)	187, 194
XhoI	CTCGAG	1 cut(s)	431
XmaJI	CCTAGG	1 cut(s)	34
XmiI	GTMKAC	1 cut(s)	214
XspI	CTAG	2 cut(s)	35, 165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.