Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0018651

Physical Location & Seq

Genomic Coordinates Forward (+)

50927702 .. 50927962

Gene Structure 261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG388100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGACGAGAGCAGGAACCCACTTTCGGTGATCCTGGCCATGATTGTGGTTTGGTTTCTGGAGAGATTGTCGTTTATGCTGGTGGAGTCGTCGGAACTATTGAAGTCGGGGGTGGGCGGAGATGGCGCTGAGGTCGATGGCATAGGCCTAATATGGGGCAGAATGGTGGTTAGTCCCAATGGGATGCCGAATAAGAGCATGAAGAGTGAAGAGGAAGAGATGAAGGAACTTACACATAATTTCGAACCAAATTATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016422 GO:0016556 GO:0016604 GO:0016607 GO:0016740 GO:0016741 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0036396 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045293 GO:0046483 GO:0070013 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MT-A70

Protein Analysis

86

Amino Acids

9.57

Weight (kDa)

4.5

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018651)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003165
rosa_multiflora	Rmu_sc0000284.1_g000030
rosa_roxburghii	Rroxscaffold_6G00387910
rosa_samantha	Rh1AG022400 Rh2CG255500 Rh2DG023100 Rh3CG251400 Rh6AG285300 Rh7AG388100 Rh7CG174800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	117
AclWI	GGATC	1 cut(s)	25
AcoI	YGGCCR	1 cut(s)	36
AfiI	CCNNNNNNNGG	2 cut(s)	25, 154
AgsI	TTSAA	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	33
AlwI	GGATC	1 cut(s)	25
AoxI	GGCC	2 cut(s)	36, 145
AspLEI	GCGC	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	40
AsuII	TTCGAA	1 cut(s)	243
BalI	TGGCCA	1 cut(s)	38
BbvCI	CCTCAGC	1 cut(s)	129
BccI	CCATC	2 cut(s)	116, 131
BciT130I	CCWGG	1 cut(s)	35
BfoI	RGCGCY	1 cut(s)	129
Bme1390I	CCNGG	1 cut(s)	35
BmiI	GGNNCC	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	35
BmsI	GCATC	1 cut(s)	174
BpmI	CTGGAG	1 cut(s)	80
Bpu10I	CCTNAGC	1 cut(s)	129
Bpu14I	TTCGAA	1 cut(s)	243
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 154
BseBI	CCWGG	1 cut(s)	35
BseGI	GGATG	1 cut(s)	189
BseLI	CCNNNNNNNGG	2 cut(s)	25, 154
BseMII	CTCAG	1 cut(s)	120
BshFI	GGCC	2 cut(s)	38, 147
BslFI	GGGAC	1 cut(s)	159
BslI	CCNNNNNNNGG	2 cut(s)	25, 154
BsmFI	GGGAC	1 cut(s)	159
BsnI	GGCC	2 cut(s)	38, 147
Bsp119I	TTCGAA	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	1 cut(s)	117
BspANI	GGCC	2 cut(s)	38, 147
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	17
BspPI	GGATC	1 cut(s)	25
BspT104I	TTCGAA	1 cut(s)	243
BssMI	GATC	1 cut(s)	30
Bst2UI	CCWGG	1 cut(s)	35
Bst6I	CTCTTC	3 cut(s)	197, 204, 210
BstBI	TTCGAA	1 cut(s)	243
BstDEI	CTNAG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	189
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	1 cut(s)	123
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	33
BstXI	CCANNNNNNTGG	1 cut(s)	46
BsuRI	GGCC	2 cut(s)	38, 147
BtsCI	GGATG	1 cut(s)	189
CfoI	GCGC	1 cut(s)	128
CviAII	CATG	2 cut(s)	40, 199
CviJI	RGCY	2 cut(s)	38, 147
CviKI_1	RGCY	2 cut(s)	38, 147
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	3 cut(s)	197, 204, 210
EarI	CTCTTC	3 cut(s)	197, 204, 210
EciI	GGCGGA	1 cut(s)	132
Eco147I	AGGCCT	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	33
EcoT22I	ATGCAT	1 cut(s)	259
FaeI	CATG	2 cut(s)	43, 202
FaiI	YATR	8 cut(s)	41, 77, 143, 154, 200, 237, 255, 259
FaqI	GGGAC	1 cut(s)	159
FatI	CATG	2 cut(s)	39, 198
FokI	GGATG	1 cut(s)	196
GlaI	GCGC	1 cut(s)	127
GsuI	CTGGAG	1 cut(s)	80
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	2 cut(s)	38, 147
HhaI	GCGC	1 cut(s)	128
Hin1II	CATG	2 cut(s)	43, 202
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HinfI	GANTC	1 cut(s)	86
HphI	GGTGA	1 cut(s)	40
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	1 cut(s)	59
Hpy99I	CGWCG	1 cut(s)	94
HpyAV	CCTTC	1 cut(s)	217
HpyCH4V	TGCA	1 cut(s)	257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	123
HpyF3I	CTNAG	1 cut(s)	129
Hsp92II	CATG	2 cut(s)	43, 202
HspAI	GCGC	1 cut(s)	126
Kzo9I	GATC	1 cut(s)	30
LpnPI	CCDG	4 cut(s)	20, 44, 47, 65
LweI	GCATC	1 cut(s)	174
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	3 cut(s)	214, 221, 227
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	2 cut(s)	238, 250
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	2 cut(s)	124, 205
Mox20I	TGGCCA	1 cut(s)	38
Mph1103I	ATGCAT	1 cut(s)	259
MscI	TGGCCA	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	44
Msp20I	TGGCCA	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	123
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	2 cut(s)	43, 202
NlaIV	GGNNCC	1 cut(s)	17
NsiI	ATGCAT	1 cut(s)	259
NspV	TTCGAA	1 cut(s)	243
PceI	AGGCCT	1 cut(s)	147
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	44
Sau3AI	GATC	1 cut(s)	30
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	1 cut(s)	35
SetI	ASST	1 cut(s)	135
SfaNI	GCATC	1 cut(s)	174
SfuI	TTCGAA	1 cut(s)	243
SgeI	CNNG	9 cut(s)	19, 25, 46, 47, 52, 71, 92, 120, 211
SmiMI	CAYNNNNRTG	1 cut(s)	44
Sse9I	AATT	2 cut(s)	238, 250
SseBI	AGGCCT	1 cut(s)	147
SsiI	CCGC	1 cut(s)	117
StuI	AGGCCT	1 cut(s)	147
StyD4I	CCNGG	1 cut(s)	33
TaqI	TCGA	2 cut(s)	135, 243
TasI	AATT	2 cut(s)	238, 250
TspDTI	ATGAA	2 cut(s)	215, 236
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.