Rh2DG023100

Belongs to the MT-A70-like family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
1362619 .. 1362861
243 bp
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UTR
Exon/CDS
Intron
Rh2DG023100.1

Sequence Viewer

Length: 243 bp
ATGGGGCAGAATGGTGGAATGGTGGTTAGTCCCAATGGGATTCCGAATAAGAGCATGAAGAGTGAAGAGGAAGAGATGAAGGAACTTACACATAATTTCGAGCCAAATTATGCAGAAACAGAGGGAAGATGGGAAGATGGCAAGATGCAGAGTTTTGAGCCAAAGCCGAGTTCTTCCGGAGCTAGGAGAGAGGTAGGGGAAATTTTGGAATTTTTCCTGATAGGTGGGGCCCACATGGTCTGA

Protein Analysis

80

Amino Acids

8.9

Weight (kDa)

4.81

Isoelectric Point (pI)

72.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018651)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 176
AcsI RAATTY 2 cut(s) 201, 209
AfiI CCNNNNNNNGG 1 cut(s) 183
AjuI GAANNNNNNNTTGG 2 cut(s) 154, 186
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
Aor13HI TCCGGA 1 cut(s) 176
AoxI GGCC 1 cut(s) 228
ApaI GGGCCC 1 cut(s) 232
ApoI RAATTY 2 cut(s) 201, 209
AspS9I GGNCC 2 cut(s) 228, 229
BaeGI GKGCMC 1 cut(s) 232
BanII GRGCYC 1 cut(s) 232
BccI CCATC 2 cut(s) 123, 131
BfaI CTAG 1 cut(s) 183
BmgT120I GGNCC 2 cut(s) 228, 229
BmiI GGNNCC 2 cut(s) 229, 230
BmsI GCATC 1 cut(s) 135
BsaWI WCCGGW 1 cut(s) 176
Bsc4I CCNNNNNNNGG 1 cut(s) 183
BseAI TCCGGA 1 cut(s) 176
BseLI CCNNNNNNNGG 1 cut(s) 183
BseSI GKGCMC 1 cut(s) 232
BshFI GGCC 1 cut(s) 230
BsiSI CCGG 1 cut(s) 177
BslFI GGGAC 1 cut(s) 15
BslI CCNNNNNNNGG 1 cut(s) 183
BsmFI GGGAC 1 cut(s) 15
BsnI GGCC 1 cut(s) 230
Bsp120I GGGCCC 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 232
Bsp13I TCCGGA 1 cut(s) 176
BspANI GGCC 1 cut(s) 230
BspEI TCCGGA 1 cut(s) 176
BspLI GGNNCC 2 cut(s) 229, 230
Bst6I CTCTTC 3 cut(s) 53, 60, 66
BstSLI GKGCMC 1 cut(s) 232
BsuRI GGCC 1 cut(s) 230
Cfr13I GGNCC 2 cut(s) 228, 229
CviAII CATG 2 cut(s) 55, 235
CviJI RGCY 5 cut(s) 103, 160, 166, 182, 230
CviKI_1 RGCY 5 cut(s) 103, 160, 166, 182, 230
Eam1104I CTCTTC 3 cut(s) 53, 60, 66
EarI CTCTTC 3 cut(s) 53, 60, 66
Eco24I GRGCYC 1 cut(s) 232
EcoO109I RGGNCCY 1 cut(s) 228
EcoT38I GRGCYC 1 cut(s) 232
FaeI CATG 2 cut(s) 58, 238
FaiI YATR 4 cut(s) 56, 93, 111, 236
FaqI GGGAC 1 cut(s) 15
FatI CATG 2 cut(s) 54, 234
FriOI GRGCYC 1 cut(s) 232
FspBI CTAG 1 cut(s) 183
HaeIII GGCC 1 cut(s) 230
HapII CCGG 1 cut(s) 177
Hin1II CATG 2 cut(s) 58, 238
HinfI GANTC 1 cut(s) 40
HpaII CCGG 1 cut(s) 177
Hpy188I TCNGA 2 cut(s) 45, 242
Hpy188III TCNNGA 2 cut(s) 177, 217
HpyAV CCTTC 1 cut(s) 73
HpyCH4V TGCA 2 cut(s) 113, 148
Hsp92II CATG 2 cut(s) 58, 238
Kpn2I TCCGGA 1 cut(s) 176
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 2 cut(s) 190, 230
LweI GCATC 1 cut(s) 135
MaeI CTAG 1 cut(s) 183
MboII GAAGA 6 cut(s) 70, 77, 83, 138, 146, 165
MhlI GDGCHC 1 cut(s) 232
MluCI AATT 4 cut(s) 94, 106, 201, 209
MnlI CCTC 3 cut(s) 61, 115, 184
MroI TCCGGA 1 cut(s) 176
MspI CCGG 1 cut(s) 177
NlaIII CATG 2 cut(s) 58, 238
NlaIV GGNNCC 2 cut(s) 229, 230
NmeAIII GCCGAG 1 cut(s) 192
PfeI GAWTC 1 cut(s) 40
PspN4I GGNNCC 2 cut(s) 229, 230
PspOMI GGGCCC 1 cut(s) 228
PspPI GGNCC 2 cut(s) 228, 229
Sau96I GGNCC 2 cut(s) 228, 229
SduI GDGCHC 1 cut(s) 232
SetI ASST 3 cut(s) 184, 195, 226
SfaNI GCATC 1 cut(s) 135
SgeI CNNG 7 cut(s) 67, 112, 154, 180, 189, 195, 229
Sse9I AATT 4 cut(s) 94, 106, 201, 209
SspMI CTAG 1 cut(s) 183
TaqI TCGA 1 cut(s) 99
TasI AATT 4 cut(s) 94, 106, 201, 209
TfiI GAWTC 1 cut(s) 40
TspDTI ATGAA 2 cut(s) 71, 92
XapI RAATTY 2 cut(s) 201, 209
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.