RLG00000003224

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0017452
Physical Location & Seq
Reverse (-)
45848266 .. 45848976
711 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003224

Sequence Viewer

Length: 366 bp
ATGCGGTGGGGACTGAGAGTCCTAATCGTGGACGACGATGATGACGGCGAAGGTGACGATGATGTCGATGAAGATGACGGCGACGAGGATCATCACCGGGCATCGAGGCGACGAGGATCATCACCAGGCTGTACTGCTCCGCCAATCGGATCTGACAGAGACAGAGTTTCAGTCGGATTCCGAAGGCCTCGACATCGCCACCATCAGAGAAGTGAAGGAGGTTTGGTTTTCGTGACTGGAGACGACGGCGACGCGGATCATCACCAGGCATCGAGGCGACGAGGATCATCACCAGGCATCGAGGTTCTGGGCCGCTATAAATTCGGGAGGAAGAAGTTAGAAATTGCCGAATTGGCATGGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.57

Weight (kDa)

5.76

Isoelectric Point (pI)

65.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 62
AccII CGCG 1 cut(s) 254
AciI CCGC 4 cut(s) 4, 140, 254, 313
AclWI GGATC 5 cut(s) 96, 124, 157, 264, 292
AcsI RAATTY 1 cut(s) 320
AfaI GTAC 1 cut(s) 133
AfiI CCNNNNNNNGG 2 cut(s) 28, 146
AhdI GACNNNNNGTC 1 cut(s) 17
AjnI CCWGG 3 cut(s) 124, 264, 292
Alw26I GTCTC 2 cut(s) 153, 234
AlwI GGATC 5 cut(s) 96, 124, 157, 264, 292
AoxI GGCC 2 cut(s) 185, 310
ApoI RAATTY 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 310
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 5 cut(s) 65, 86, 114, 254, 282
BccI CCATC 1 cut(s) 210
BceAI ACGGC 3 cut(s) 61, 94, 262
BciT130I CCWGG 3 cut(s) 126, 266, 294
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 2 cut(s) 153, 234
BglI GCCNNNNNGGC 1 cut(s) 353
BisI GCNGC 1 cut(s) 313
BlsI GCNGC 1 cut(s) 314
Bme1390I CCNGG 4 cut(s) 98, 126, 266, 294
BmeRI GACNNNNNGTC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 310
BmrFI CCNGG 4 cut(s) 98, 126, 266, 294
BmsI GCATC 3 cut(s) 110, 278, 306
BpmI CTGGAG 1 cut(s) 258
BpuMI CCSGG 1 cut(s) 98
BsaXI ACNNNNNCTCC 2 cut(s) 210, 240
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 146
Bse1I ACTGG 1 cut(s) 241
BseBI CCWGG 3 cut(s) 126, 266, 294
BseLI CCNNNNNNNGG 2 cut(s) 28, 146
BseMII CTCAG 1 cut(s) 5
BseNI ACTGG 1 cut(s) 241
Bsh1236I CGCG 1 cut(s) 254
BshFI GGCC 2 cut(s) 187, 312
BsiSI CCGG 1 cut(s) 97
BslFI GGGAC 1 cut(s) 24
BslI CCNNNNNNNGG 2 cut(s) 28, 146
BsmAI GTCTC 2 cut(s) 153, 234
BsmBI CGTCTC 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 24
BsnI GGCC 2 cut(s) 187, 312
Bsp143I GATC 5 cut(s) 88, 116, 149, 256, 284
BspACI CCGC 4 cut(s) 4, 140, 254, 313
BspANI GGCC 2 cut(s) 187, 312
BspCNI CTCAG 1 cut(s) 6
BspFNI CGCG 1 cut(s) 254
BspPI GGATC 5 cut(s) 96, 124, 157, 264, 292
BsrI ACTGG 1 cut(s) 241
BssMI GATC 5 cut(s) 88, 116, 149, 256, 284
Bst2UI CCWGG 3 cut(s) 126, 266, 294
BstDEI CTNAG 1 cut(s) 14
BstFNI CGCG 1 cut(s) 254
BstKTI GATC 5 cut(s) 91, 119, 152, 259, 287
BstMAI GTCTC 2 cut(s) 153, 234
BstMBI GATC 5 cut(s) 88, 116, 149, 256, 284
BstMWI GCNNNNNNNGC 1 cut(s) 353
BstNI CCWGG 3 cut(s) 126, 266, 294
BstSCI CCNGG 4 cut(s) 96, 124, 264, 292
BstUI CGCG 1 cut(s) 254
BstX2I RGATCY 1 cut(s) 149
BstYI RGATCY 1 cut(s) 149
BsuRI GGCC 2 cut(s) 187, 312
BtgZI GCGATG 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 310
CseI GACGC 1 cut(s) 260
Csp6I GTAC 1 cut(s) 132
CviAII CATG 1 cut(s) 357
CviJI RGCY 3 cut(s) 129, 187, 312
CviKI_1 RGCY 3 cut(s) 129, 187, 312
CviQI GTAC 1 cut(s) 132
DdeI CTNAG 1 cut(s) 14
DpnI GATC 5 cut(s) 90, 118, 151, 258, 286
DpnII GATC 5 cut(s) 88, 116, 149, 256, 284
DrdI GACNNNNNNGTC 1 cut(s) 62
DriI GACNNNNNGTC 1 cut(s) 17
DseDI GACNNNNNNGTC 1 cut(s) 62
Eam1105I GACNNNNNGTC 1 cut(s) 17
EciI GGCGGA 1 cut(s) 129
Eco147I AGGCCT 1 cut(s) 187
EcoRII CCWGG 3 cut(s) 124, 264, 292
Esp3I CGTCTC 1 cut(s) 234
FaeI CATG 1 cut(s) 360
FaiI YATR 2 cut(s) 318, 358
FaqI GGGAC 1 cut(s) 24
FatI CATG 1 cut(s) 356
Fnu4HI GCNGC 1 cut(s) 313
Fsp4HI GCNGC 1 cut(s) 313
GluI GCNGC 1 cut(s) 313
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 2 cut(s) 187, 312
HapII CCGG 1 cut(s) 97
HgaI GACGC 1 cut(s) 260
Hin1II CATG 1 cut(s) 360
HinfI GANTC 2 cut(s) 18, 177
HpaII CCGG 1 cut(s) 97
HphI GGTGA 5 cut(s) 65, 86, 114, 254, 282
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 5 cut(s) 149, 154, 176, 182, 207
Hpy188III TCNNGA 2 cut(s) 232, 325
Hpy8I GTNNAC 1 cut(s) 31
Hpy99I CGWCG 6 cut(s) 38, 86, 114, 248, 254, 282
HpyAV CCTTC 3 cut(s) 44, 177, 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 353
HpyF3I CTNAG 1 cut(s) 14
Hsp92II CATG 1 cut(s) 360
Kzo9I GATC 5 cut(s) 88, 116, 149, 256, 284
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 9 cut(s) 110, 111, 138, 222, 251, 278, 279, 293, 306
LweI GCATC 3 cut(s) 110, 278, 306
MaeIII GTNAC 2 cut(s) 53, 232
MalI GATC 5 cut(s) 90, 118, 151, 258, 286
MboI GATC 5 cut(s) 88, 116, 149, 256, 284
MboII GAAGA 2 cut(s) 83, 343
MflI RGATCY 1 cut(s) 149
MluCI AATT 3 cut(s) 320, 342, 350
MlyI GAGTC 1 cut(s) 27
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 9 cut(s) 79, 99, 107, 198, 212, 267, 275, 295, 321
MspI CCGG 1 cut(s) 97
MspR9I CCNGG 4 cut(s) 98, 126, 266, 294
MvaI CCWGG 3 cut(s) 126, 266, 294
MvnI CGCG 1 cut(s) 254
MwoI GCNNNNNNNGC 1 cut(s) 353
NciI CCSGG 1 cut(s) 98
NdeII GATC 5 cut(s) 88, 116, 149, 256, 284
NlaIII CATG 1 cut(s) 360
NmuCI GTSAC 2 cut(s) 53, 232
PceI AGGCCT 1 cut(s) 187
PcsI WCGNNNNNNNCGW 2 cut(s) 33, 63
PfeI GAWTC 1 cut(s) 177
PkrI GCNGC 1 cut(s) 314
PleI GAGTC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 26
Psp6I CCWGG 3 cut(s) 124, 264, 292
PspGI CCWGG 3 cut(s) 124, 264, 292
PspPI GGNCC 1 cut(s) 310
PsuI RGATCY 1 cut(s) 149
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
SatI GCNGC 1 cut(s) 313
Sau3AI GATC 5 cut(s) 88, 116, 149, 256, 284
Sau96I GGNCC 1 cut(s) 310
SchI GAGTC 1 cut(s) 27
ScrFI CCNGG 4 cut(s) 98, 126, 266, 294
SetI ASST 3 cut(s) 55, 223, 306
SfaNI GCATC 3 cut(s) 110, 278, 306
Sse9I AATT 3 cut(s) 320, 342, 350
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 4 cut(s) 4, 140, 254, 313
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 4 cut(s) 96, 124, 264, 292
TaqI TCGA 5 cut(s) 66, 104, 190, 272, 300
TasI AATT 3 cut(s) 320, 342, 350
TatI WGTACW 1 cut(s) 131
TauI GCSGC 1 cut(s) 315
TfiI GAWTC 1 cut(s) 177
TseFI GTSAC 2 cut(s) 53, 232
Tsp45I GTSAC 2 cut(s) 53, 232
TspDTI ATGAA 1 cut(s) 84
XapI RAATTY 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.