Rh3DG346400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0017452
Physical Location & Seq
Reverse (-)
39186541 .. 39188354
1814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG346400.1

Sequence Viewer

Length: 333 bp
ATGGGTAAAATTCAAGATGCCAAATCTGTAAATCTTCTGCAGGTTCCAGAGGGGTCTGAAGCTCAAGCCCATGGCTTTGATCAAGAAGAAAAAGCTGCAATTAATGTCAGAAATAGGAAACAAAAGAAGATGAGCCATACTACTGGAACAATGACTAATGCAGCAAAAATTTATAAATGGCAACTAGAAAACAAAAAGGATGCACCGCCTAACCTTAAAGAGAGATTCAAGATAACCCACCTAAAGAAGGGATCTAAAACAGAGTATATTGATGAAGCATCAACGCAAGCTAGCTGTGAAACCCACAGTTATATCATCTATGTGAAACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.52

Weight (kDa)

9.43

Isoelectric Point (pI)

32.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 174
Acc36I ACCTGC 1 cut(s) 31
AciI CCGC 1 cut(s) 206
AclWI GGATC 1 cut(s) 259
AcsI RAATTY 2 cut(s) 9, 168
AcuI CTGAAG 1 cut(s) 78
AfiI CCNNNNNNNGG 1 cut(s) 247
AgsI TTSAA 2 cut(s) 14, 229
AluBI AGCT 4 cut(s) 62, 95, 290, 294
AluI AGCT 4 cut(s) 62, 95, 290, 294
AlwI GGATC 1 cut(s) 259
ApeKI GCWGC 2 cut(s) 95, 161
ApoI RAATTY 2 cut(s) 9, 168
AseI ATTAAT 1 cut(s) 102
AsuNHI GCTAGC 1 cut(s) 290
BbvI GCAGC 2 cut(s) 82, 173
BclI TGATCA 1 cut(s) 79
BfaI CTAG 2 cut(s) 185, 291
BfmI CTRYAG 1 cut(s) 38
BfuAI ACCTGC 1 cut(s) 31
BisI GCNGC 2 cut(s) 96, 162
BlsI GCNGC 2 cut(s) 97, 163
BmiI GGNNCC 1 cut(s) 45
BmsI GCATC 3 cut(s) 7, 190, 287
BmtI GCTAGC 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 70
Bsc4I CCNNNNNNNGG 1 cut(s) 247
Bse1I ACTGG 1 cut(s) 148
BseDI CCNNGG 1 cut(s) 70
BseGI GGATG 1 cut(s) 205
BseLI CCNNNNNNNGG 1 cut(s) 247
BseNI ACTGG 1 cut(s) 148
BseXI GCAGC 2 cut(s) 82, 173
BslI CCNNNNNNNGG 1 cut(s) 247
Bsp143I GATC 2 cut(s) 79, 251
Bsp19I CCATGG 1 cut(s) 70
BspACI CCGC 1 cut(s) 206
BspLI GGNNCC 1 cut(s) 45
BspMAI CTGCAG 1 cut(s) 42
BspMI ACCTGC 1 cut(s) 31
BspOI GCTAGC 1 cut(s) 294
BspPI GGATC 1 cut(s) 259
BsrI ACTGG 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 2 cut(s) 79, 251
BssT1I CCWWGG 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 308
BstC8I GCNNGC 2 cut(s) 288, 292
BstDSI CCRYGG 1 cut(s) 70
BstENI CCTNNNNNAGG 1 cut(s) 245
BstF5I GGATG 1 cut(s) 205
BstKTI GATC 2 cut(s) 82, 254
BstMBI GATC 2 cut(s) 79, 251
BstSFI CTRYAG 1 cut(s) 38
BstV1I GCAGC 2 cut(s) 82, 173
BstX2I RGATCY 1 cut(s) 251
BstXI CCANNNNNNTGG 1 cut(s) 143
BstYI RGATCY 1 cut(s) 251
BtgI CCRYGG 1 cut(s) 70
BtsCI GGATG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 328
BveI ACCTGC 1 cut(s) 31
Cac8I GCNNGC 2 cut(s) 288, 292
CviAII CATG 1 cut(s) 71
CviJI RGCY 7 cut(s) 62, 68, 75, 95, 135, 290, 294
CviKI_1 RGCY 7 cut(s) 62, 68, 75, 95, 135, 290, 294
DpnI GATC 2 cut(s) 81, 253
DpnII GATC 2 cut(s) 79, 251
Eco130I CCWWGG 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 78
EcoNI CCTNNNNNAGG 1 cut(s) 245
EcoT14I CCWWGG 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 1 cut(s) 74
FaiI YATR 6 cut(s) 72, 138, 174, 267, 312, 321
FatI CATG 1 cut(s) 70
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 96, 162
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 2 cut(s) 96, 162
FspBI CTAG 2 cut(s) 185, 291
GluI GCNGC 2 cut(s) 96, 162
Hin1II CATG 1 cut(s) 74
HinfI GANTC 1 cut(s) 225
Hpy188I TCNGA 2 cut(s) 58, 110
Hpy188III TCNNGA 4 cut(s) 14, 47, 83, 229
HpyAV CCTTC 1 cut(s) 241
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4V TGCA 4 cut(s) 40, 98, 161, 203
Hsp92II CATG 1 cut(s) 74
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 2 cut(s) 79, 251
LpnPI CCDG 3 cut(s) 26, 60, 129
Lsp1109I GCAGC 2 cut(s) 82, 173
LweI GCATC 3 cut(s) 7, 190, 287
MaeI CTAG 2 cut(s) 185, 291
MalI GATC 2 cut(s) 81, 253
MboI GATC 2 cut(s) 79, 251
MboII GAAGA 3 cut(s) 26, 98, 139
MflI RGATCY 1 cut(s) 251
MluCI AATT 3 cut(s) 9, 99, 168
MnlI CCTC 1 cut(s) 43
MseI TTAA 2 cut(s) 102, 216
MslI CAYNNNNRTG 1 cut(s) 320
NcoI CCATGG 1 cut(s) 70
NdeII GATC 2 cut(s) 79, 251
NheI GCTAGC 1 cut(s) 290
NlaIII CATG 1 cut(s) 74
NlaIV GGNNCC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 225
PkrI GCNGC 2 cut(s) 97, 163
PshBI ATTAAT 1 cut(s) 102
PsiI TTATAA 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 45
PstI CTGCAG 1 cut(s) 42
PsuI RGATCY 1 cut(s) 251
RseI CAYNNNNRTG 1 cut(s) 320
SaqAI TTAA 2 cut(s) 102, 216
SatI GCNGC 2 cut(s) 96, 162
Sau3AI GATC 2 cut(s) 79, 251
SetI ASST 7 cut(s) 45, 64, 97, 216, 243, 292, 296
SfaNI GCATC 3 cut(s) 7, 190, 287
SfcI CTRYAG 1 cut(s) 38
SmiMI CAYNNNNRTG 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
Sse9I AATT 3 cut(s) 9, 99, 168
SsiI CCGC 1 cut(s) 206
SspMI CTAG 2 cut(s) 185, 291
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 308
TasI AATT 3 cut(s) 9, 99, 168
TfiI GAWTC 1 cut(s) 225
Tru1I TTAA 2 cut(s) 102, 216
Tru9I TTAA 2 cut(s) 102, 216
TseI GCWGC 2 cut(s) 95, 161
TspDTI ATGAA 1 cut(s) 288
VspI ATTAAT 1 cut(s) 102
XagI CCTNNNNNAGG 1 cut(s) 245
XapI RAATTY 2 cut(s) 9, 168
XspI CTAG 2 cut(s) 185, 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.