Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0017452

Physical Location & Seq

Genomic Coordinates Reverse (-)

49837762 .. 49853194

Gene Structure 15433 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG208100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGATTGGTGCATGAATGACTATTGTGGCCACATAAGGTTCAAACTGAGATCCAATATTTTTCAAACCGAAACTTGTGGATCTGAGGTGAGATTTTGCCCTGACGTGAAGAATCTCAAGACCGCCTTCTCTTCCTTGGCAAGGTTTCTGATTTTTGGAGGAAATTTGAAAGTCAAACAGCATTGCACAGCGGGTAAAATTCAAGATGCCAAATCCGTAAATCCTCTGCAGGTTCCAGAGGGATCAGAAACATGTGATGCAAACCCCATGTCATTTGTCACCTTTGTCCCCACGTTAGGCACGGAAATTCACAAGCTTCAAAATTATGTGGGGATATGGCACAAGGATATATCTCCGCGAAAAGTTGTATGGGTGGCCAACAGAGAAAATTCTCTTGCAGCTACAGACAACTTGGCGAGCTTGACTGTTAGCAGCAATGGGAATCTGATGCTTGTTGATGGGAAACAGAATAAAACTTTCTTTAATTGGTCAATGACTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

167

Amino Acids

18.77

Weight (kDa)

8.76

Isoelectric Point (pI)

44.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	122 - 160	1.6e-06	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017452)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003224 RLG00000034883
rosa_samantha	Rh1AG098000 Rh1BG028700 Rh1BG289600 Rh1CG092100 Rh1CG306200 Rh1DG321000 Rh2AG497600 Rh3DG346400 Rh3DG346500 Rh4AG208100 Rh6BG293600

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	220
AccII	CGCG	1 cut(s)	358
AciI	CCGC	3 cut(s)	123, 191, 356
AclWI	GGATC	3 cut(s)	45, 88, 250
AcoI	YGGCCR	2 cut(s)	28, 375
AcsI	RAATTY	4 cut(s)	163, 198, 306, 388
AfiI	CCNNNNNNNGG	2 cut(s)	141, 296
AflIII	ACRYGT	1 cut(s)	251
AgsI	TTSAA	5 cut(s)	43, 65, 169, 203, 320
AjiI	CACGTC	1 cut(s)	106
AluBI	AGCT	3 cut(s)	316, 401, 420
AluI	AGCT	3 cut(s)	316, 401, 420
AlwI	GGATC	3 cut(s)	45, 88, 250
AoxI	GGCC	2 cut(s)	28, 375
ApeKI	GCWGC	2 cut(s)	398, 432
ApoI	RAATTY	4 cut(s)	163, 198, 306, 388
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AsuHPI	GGTGA	2 cut(s)	100, 271
BalI	TGGCCA	2 cut(s)	30, 377
BbvI	GCAGC	2 cut(s)	410, 444
BccI	CCATC	1 cut(s)	452
BfmI	CTRYAG	2 cut(s)	227, 402
BfuAI	ACCTGC	1 cut(s)	220
BisI	GCNGC	2 cut(s)	399, 433
BlsI	GCNGC	2 cut(s)	400, 434
BmgBI	CACGTC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	234
BmsI	GCATC	3 cut(s)	196, 247, 438
BpuEI	CTTGAG	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 296
Bse3DI	GCAATG	2 cut(s)	181, 442
BseDI	CCNNGG	1 cut(s)	135
BseLI	CCNNNNNNNGG	2 cut(s)	141, 296
BseMI	GCAATG	2 cut(s)	181, 442
BseMII	CTCAG	2 cut(s)	38, 75
BseXI	GCAGC	2 cut(s)	410, 444
Bsh1236I	CGCG	1 cut(s)	358
BshFI	GGCC	2 cut(s)	30, 377
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	2 cut(s)	141, 296
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	2 cut(s)	30, 377
Bsp143I	GATC	3 cut(s)	50, 80, 242
BspACI	CCGC	3 cut(s)	123, 191, 356
BspANI	GGCC	2 cut(s)	30, 377
BspCNI	CTCAG	2 cut(s)	39, 76
BspFNI	CGCG	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	234
BspMAI	CTGCAG	1 cut(s)	231
BspMI	ACCTGC	1 cut(s)	220
BspPI	GGATC	3 cut(s)	45, 88, 250
BsrDI	GCAATG	2 cut(s)	181, 442
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	3 cut(s)	50, 80, 242
BssT1I	CCWWGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	136
BstC8I	GCNNGC	1 cut(s)	418
BstDEI	CTNAG	2 cut(s)	47, 84
BstENI	CCTNNNNNAGG	1 cut(s)	139
BstFNI	CGCG	1 cut(s)	358
BstKTI	GATC	3 cut(s)	53, 83, 245
BstMBI	GATC	3 cut(s)	50, 80, 242
BstNSI	RCATGY	1 cut(s)	255
BstSFI	CTRYAG	2 cut(s)	227, 402
BstUI	CGCG	1 cut(s)	358
BstV1I	GCAGC	2 cut(s)	410, 444
BstX2I	RGATCY	2 cut(s)	50, 80
BstYI	RGATCY	2 cut(s)	50, 80
BsuRI	GGCC	2 cut(s)	30, 377
BtrI	CACGTC	1 cut(s)	106
BveI	ACCTGC	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	418
CviAII	CATG	3 cut(s)	13, 252, 268
CviJI	RGCY	5 cut(s)	30, 316, 377, 401, 420
CviKI_1	RGCY	5 cut(s)	30, 316, 377, 401, 420
DdeI	CTNAG	2 cut(s)	47, 84
DpnI	GATC	3 cut(s)	52, 82, 244
DpnII	GATC	3 cut(s)	50, 80, 242
EaeI	YGGCCR	2 cut(s)	28, 375
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	135
EcoNI	CCTNNNNNAGG	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	3 cut(s)	16, 255, 271
FaiI	YATR	8 cut(s)	14, 35, 253, 269, 327, 337, 350, 370
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	3 cut(s)	12, 251, 267
FauI	CCCGC	1 cut(s)	184
Fnu4HI	GCNGC	2 cut(s)	399, 433
Fsp4HI	GCNGC	2 cut(s)	399, 433
GluI	GCNGC	2 cut(s)	399, 433
HaeIII	GGCC	2 cut(s)	30, 377
Hin1II	CATG	3 cut(s)	16, 255, 271
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	2 cut(s)	112, 442
HphI	GGTGA	2 cut(s)	100, 271
Hpy188I	TCNGA	4 cut(s)	85, 150, 247, 447
Hpy188III	TCNNGA	3 cut(s)	118, 203, 236
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	2 cut(s)	105, 293
HpyCH4V	TGCA	5 cut(s)	12, 186, 229, 260, 398
HpyF3I	CTNAG	2 cut(s)	47, 84
HpySE526I	ACGT	2 cut(s)	105, 293
Hsp92II	CATG	3 cut(s)	16, 255, 271
Kzo9I	GATC	3 cut(s)	50, 80, 242
LpnPI	CCDG	3 cut(s)	114, 215, 249
Lsp1109I	GCAGC	2 cut(s)	410, 444
LweI	GCATC	3 cut(s)	196, 247, 438
MaeII	ACGT	2 cut(s)	105, 293
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	3 cut(s)	52, 82, 244
MboI	GATC	3 cut(s)	50, 80, 242
MboII	GAAGA	2 cut(s)	121, 123
MflI	RGATCY	2 cut(s)	50, 80
MlsI	TGGCCA	2 cut(s)	30, 377
MluCI	AATT	6 cut(s)	163, 198, 306, 322, 388, 484
MluNI	TGGCCA	2 cut(s)	30, 377
MnlI	CCTC	4 cut(s)	79, 152, 232, 234
Mox20I	TGGCCA	2 cut(s)	30, 377
MscI	TGGCCA	2 cut(s)	30, 377
MseI	TTAA	2 cut(s)	483, 502
Msp20I	TGGCCA	2 cut(s)	30, 377
MspA1I	CMGCKG	1 cut(s)	191
MvnI	CGCG	1 cut(s)	358
NdeII	GATC	3 cut(s)	50, 80, 242
NlaIII	CATG	3 cut(s)	16, 255, 271
NlaIV	GGNNCC	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	277
NspI	RCATGY	1 cut(s)	255
PciI	ACATGT	1 cut(s)	251
PfeI	GAWTC	2 cut(s)	112, 442
PkrI	GCNGC	2 cut(s)	400, 434
PscI	ACATGT	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	234
PstI	CTGCAG	1 cut(s)	231
PsuI	RGATCY	2 cut(s)	50, 80
SaqAI	TTAA	2 cut(s)	483, 502
SatI	GCNGC	2 cut(s)	399, 433
Sau3AI	GATC	3 cut(s)	50, 80, 242
SfaNI	GCATC	3 cut(s)	196, 247, 438
SfcI	CTRYAG	2 cut(s)	227, 402
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	6 cut(s)	163, 198, 306, 322, 388, 484
SsiI	CCGC	3 cut(s)	123, 191, 356
SspI	AATATT	1 cut(s)	58
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	2 cut(s)	108, 296
TasI	AATT	6 cut(s)	163, 198, 306, 322, 388, 484
TfiI	GAWTC	2 cut(s)	112, 442
Tru1I	TTAA	2 cut(s)	483, 502
Tru9I	TTAA	2 cut(s)	483, 502
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	2 cut(s)	398, 432
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	1 cut(s)	29
TspGWI	ACGGA	2 cut(s)	205, 317
XagI	CCTNNNNNAGG	1 cut(s)	139
XapI	RAATTY	4 cut(s)	163, 198, 306, 388
XceI	RCATGY	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.