RLG00000034883

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0017452
Physical Location & Seq
Forward (+)
56509225 .. 56511591
2367 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034883

Sequence Viewer

Length: 423 bp
ATGACAGCACCCGACGTGCGCGAGGTTATGCGGTGGGGACTGAGAGTCCTAATCGTGGACGACGACGATGACGGCGAAGGTGACGATGATGTCGATGAAGATGACAGCGACGAGGATCATCACCGGGCATCGAGGCGACGAGGATCATCACCAGGCTGTACTGCTCCGCCAATCGGATCTGACAGAGACAGAGTTTCAGTCGGATTCCGAAGGCCTCGACATTGCCACCGTCAGAGAAGTGAAGGAGGTTTGGTTTTCGTGACCGGAGACGACGGCGACGTGGATCATCACTGGGCATCGAGGCGACGAGGATCATCACCAGGCATCGAGAAGATTCAGCAGCTATCGCGGCCCCTGCTTCCTCGGGTGGAACTCCAAGTTGAGGAGTTACTCGAAATGCTGCCAAGATATCAGTATCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.97

Weight (kDa)

5.07

Isoelectric Point (pI)

68.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 89
AccII CGCG 2 cut(s) 21, 349
AciI CCGC 3 cut(s) 31, 167, 349
AclWI GGATC 5 cut(s) 123, 151, 184, 291, 319
AfaI GTAC 1 cut(s) 160
AfiI CCNNNNNNNGG 3 cut(s) 55, 173, 382
AhdI GACNNNNNGTC 1 cut(s) 44
AjiI CACGTC 2 cut(s) 16, 280
AjnI CCWGG 2 cut(s) 151, 319
AluBI AGCT 1 cut(s) 343
AluI AGCT 1 cut(s) 343
Alw26I GTCTC 2 cut(s) 180, 261
AlwI GGATC 5 cut(s) 123, 151, 184, 291, 319
Ama87I CYCGRG 1 cut(s) 363
AoxI GGCC 2 cut(s) 212, 350
ApeKI GCWGC 2 cut(s) 340, 400
AspLEI GCGC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 351
AsuC2I CCSGG 1 cut(s) 125
AsuHPI GGTGA 4 cut(s) 92, 113, 141, 309
AvaI CYCGRG 1 cut(s) 363
BbvI GCAGC 2 cut(s) 352, 387
BceAI ACGGC 2 cut(s) 88, 289
BciT130I CCWGG 2 cut(s) 153, 321
BcnI CCSGG 1 cut(s) 125
BcoDI GTCTC 2 cut(s) 180, 261
BisI GCNGC 3 cut(s) 341, 350, 401
BlsI GCNGC 3 cut(s) 342, 351, 402
Bme1390I CCNGG 3 cut(s) 125, 153, 321
BmeRI GACNNNNNGTC 1 cut(s) 44
BmeT110I CYCGRG 1 cut(s) 363
BmgBI CACGTC 2 cut(s) 16, 280
BmgT120I GGNCC 1 cut(s) 351
BmiI GGNNCC 1 cut(s) 353
BmrFI CCNGG 3 cut(s) 125, 153, 321
BmrI ACTGGG 1 cut(s) 301
BmsI GCATC 3 cut(s) 137, 305, 333
BmuI ACTGGG 1 cut(s) 301
BpuMI CCSGG 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 362
BsaWI WCCGGW 1 cut(s) 263
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 173, 382
Bse1I ACTGG 1 cut(s) 296
Bse3DI GCAATG 1 cut(s) 220
BseBI CCWGG 2 cut(s) 153, 321
BseDI CCNNGG 1 cut(s) 362
BseLI CCNNNNNNNGG 3 cut(s) 55, 173, 382
BseMI GCAATG 1 cut(s) 220
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 1 cut(s) 296
BseRI GAGGAG 1 cut(s) 398
BseXI GCAGC 2 cut(s) 352, 387
Bsh1236I CGCG 2 cut(s) 21, 349
BshFI GGCC 2 cut(s) 214, 352
BsiHKCI CYCGRG 1 cut(s) 363
BsiSI CCGG 2 cut(s) 124, 264
BslFI GGGAC 1 cut(s) 51
BslI CCNNNNNNNGG 3 cut(s) 55, 173, 382
BsmAI GTCTC 2 cut(s) 180, 261
BsmBI CGTCTC 1 cut(s) 261
BsmFI GGGAC 1 cut(s) 51
BsnI GGCC 2 cut(s) 214, 352
BsoBI CYCGRG 1 cut(s) 363
Bsp143I GATC 5 cut(s) 115, 143, 176, 283, 311
BspACI CCGC 3 cut(s) 31, 167, 349
BspANI GGCC 2 cut(s) 214, 352
BspCNI CTCAG 1 cut(s) 33
BspFNI CGCG 2 cut(s) 21, 349
BspLI GGNNCC 1 cut(s) 353
BspPI GGATC 5 cut(s) 123, 151, 184, 291, 319
BsrDI GCAATG 1 cut(s) 220
BsrI ACTGG 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 362
BssMI GATC 5 cut(s) 115, 143, 176, 283, 311
Bst2UI CCWGG 2 cut(s) 153, 321
Bst4CI ACNGT 1 cut(s) 230
BstDEI CTNAG 1 cut(s) 41
BstFNI CGCG 2 cut(s) 21, 349
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 5 cut(s) 118, 146, 179, 286, 314
BstMAI GTCTC 2 cut(s) 180, 261
BstMBI GATC 5 cut(s) 115, 143, 176, 283, 311
BstMWI GCNNNNNNNGC 3 cut(s) 346, 349, 355
BstNI CCWGG 2 cut(s) 153, 321
BstSCI CCNGG 3 cut(s) 123, 151, 319
BstUI CGCG 2 cut(s) 21, 349
BstV1I GCAGC 2 cut(s) 352, 387
BstX2I RGATCY 1 cut(s) 176
BstYI RGATCY 1 cut(s) 176
BsuRI GGCC 2 cut(s) 214, 352
BtrI CACGTC 2 cut(s) 16, 280
BtsIMutI CAGTG 1 cut(s) 289
CfoI GCGC 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 351
Csp6I GTAC 1 cut(s) 159
CviJI RGCY 4 cut(s) 156, 214, 343, 352
CviKI_1 RGCY 4 cut(s) 156, 214, 343, 352
CviQI GTAC 1 cut(s) 159
DdeI CTNAG 1 cut(s) 41
DpnI GATC 5 cut(s) 117, 145, 178, 285, 313
DpnII GATC 5 cut(s) 115, 143, 176, 283, 311
DrdI GACNNNNNNGTC 1 cut(s) 89
DriI GACNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 1 cut(s) 89
Eam1105I GACNNNNNGTC 1 cut(s) 44
EciI GGCGGA 1 cut(s) 156
Eco147I AGGCCT 1 cut(s) 214
Eco32I GATATC 1 cut(s) 410
Eco88I CYCGRG 1 cut(s) 363
EcoRII CCWGG 2 cut(s) 151, 319
EcoRV GATATC 1 cut(s) 410
Esp3I CGTCTC 1 cut(s) 261
FaiI YATR 1 cut(s) 29
FaqI GGGAC 1 cut(s) 51
Fnu4HI GCNGC 3 cut(s) 341, 350, 401
Fsp4HI GCNGC 3 cut(s) 341, 350, 401
GlaI GCGC 1 cut(s) 20
GluI GCNGC 3 cut(s) 341, 350, 401
HaeIII GGCC 2 cut(s) 214, 352
HapII CCGG 2 cut(s) 124, 264
HhaI GCGC 1 cut(s) 21
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HinfI GANTC 3 cut(s) 45, 204, 334
HpaII CCGG 2 cut(s) 124, 264
HphI GGTGA 4 cut(s) 92, 113, 141, 309
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 5 cut(s) 176, 181, 203, 209, 234
Hpy188III TCNNGA 2 cut(s) 259, 328
Hpy8I GTNNAC 1 cut(s) 58
Hpy99I CGWCG 8 cut(s) 17, 65, 68, 113, 141, 275, 281, 309
HpyAV CCTTC 3 cut(s) 71, 204, 236
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4IV ACGT 2 cut(s) 15, 279
HpyF10VI GCNNNNNNNGC 3 cut(s) 346, 349, 355
HpyF3I CTNAG 1 cut(s) 41
HpySE526I ACGT 2 cut(s) 15, 279
HspAI GCGC 1 cut(s) 19
Kzo9I GATC 5 cut(s) 115, 143, 176, 283, 311
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 8 cut(s) 137, 138, 165, 277, 277, 306, 333, 368
Lsp1109I GCAGC 2 cut(s) 352, 387
LweI GCATC 3 cut(s) 137, 305, 333
MaeII ACGT 2 cut(s) 15, 279
MaeIII GTNAC 3 cut(s) 80, 259, 387
MalI GATC 5 cut(s) 117, 145, 178, 285, 313
MboI GATC 5 cut(s) 115, 143, 176, 283, 311
MboII GAAGA 2 cut(s) 110, 343
MflI RGATCY 1 cut(s) 176
MlyI GAGTC 1 cut(s) 54
MmeI TCCRAC 1 cut(s) 181
MspI CCGG 2 cut(s) 124, 264
MspR9I CCNGG 3 cut(s) 125, 153, 321
MvaI CCWGG 2 cut(s) 153, 321
MvnI CGCG 2 cut(s) 21, 349
MwoI GCNNNNNNNGC 3 cut(s) 346, 349, 355
NciI CCSGG 1 cut(s) 125
NdeII GATC 5 cut(s) 115, 143, 176, 283, 311
NlaIV GGNNCC 1 cut(s) 353
NmuCI GTSAC 2 cut(s) 80, 259
PceI AGGCCT 1 cut(s) 214
PcsI WCGNNNNNNNCGW 4 cut(s) 60, 72, 90, 276
PfeI GAWTC 2 cut(s) 204, 334
PkrI GCNGC 3 cut(s) 342, 351, 402
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
Psp6I CCWGG 2 cut(s) 151, 319
PspGI CCWGG 2 cut(s) 151, 319
PspN4I GGNNCC 1 cut(s) 353
PspPI GGNCC 1 cut(s) 351
PsuI RGATCY 1 cut(s) 176
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
SatI GCNGC 3 cut(s) 341, 350, 401
Sau3AI GATC 5 cut(s) 115, 143, 176, 283, 311
Sau96I GGNCC 1 cut(s) 351
SchI GAGTC 1 cut(s) 54
ScrFI CCNGG 3 cut(s) 125, 153, 321
SetI ASST 6 cut(s) 18, 27, 82, 250, 282, 345
SfaNI GCATC 3 cut(s) 137, 305, 333
SseBI AGGCCT 1 cut(s) 214
SsiI CCGC 3 cut(s) 31, 167, 349
StuI AGGCCT 1 cut(s) 214
StyD4I CCNGG 3 cut(s) 123, 151, 319
TaaI ACNGT 1 cut(s) 230
TaiI ACGT 2 cut(s) 18, 282
TaqI TCGA 6 cut(s) 93, 131, 217, 299, 327, 393
TatI WGTACW 1 cut(s) 158
TauI GCSGC 1 cut(s) 352
TfiI GAWTC 2 cut(s) 204, 334
TscAI CASTG 1 cut(s) 296
TseFI GTSAC 2 cut(s) 80, 259
TseI GCWGC 2 cut(s) 340, 400
Tsp45I GTSAC 2 cut(s) 80, 259
TspDTI ATGAA 1 cut(s) 111
TspRI CASTG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.