Rh1AG098000

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0017452
Physical Location & Seq
Reverse (-)
17069788 .. 17110315
40528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG098000.1

Sequence Viewer

Length: 1266 bp
ATGACCACCTCGAACGCCAGCCGCCAGAGAAGAAACCATAACAGTAGTGCCACGCAGCCATTCACCAATCTGAGAGAAGCAGAATGCGCGGCCTCCATACTTGACCGCGCCAAAGGAGGTAGCGGTCCGAATGACCGGCTGGCTCCGACAGCGTCGCGGCACCGAGATGGTTGCTCCGATTGCTGTACTGCTCCGCCAATCGGATCTGACAGAGACAGAGTTTCAGTCGGATTCCGAAGGCCTCGACATCGCCACCATCAGAGAAGTGAAGGAGGTTTGGTTTTCGTGACCAGAGACGACGGCAATGCGGATCATCACCGGGCATCGAGGCGACGAGGATCATCACCAGGCATCGAGGTTCTGGCCCAATCTCAAGACCGCCTTCTCTTCCTTGGCAAGATTGGGTATTTTTTATGCAAAGGAAATTTGAAAGTCAAACAGCATTGCACAGCGGGTAAAATTCAAGATGCCAAATCTGTAAATCCTCTGCAGGTTCCAGAGAGGTCTGAAGCTCAAGCCCATGGCTTTGATCAGGAAGAAAAAGCTGCAATTAATGTCAGAAATAGGAAACAAAAGAAGATGAGCCATACTACTGGAACAATGACTTATGCAGCAAAAATTTATAAATGGCAACTAGAAAACAAAAAGGATGCATCGCCTAACCGTAAAGAGAGATTCAAGATAACCCACCTAAAGAAGGGATCTAAAACAGAGTACATTGATGAAGCATCAACACAAGCTGTGCTCTTTATAGTGGAGGCAAAAGAGATGTTCAAGACAAAGGAAGGTCATACATTTGTACTTGACCATTGTTGGGCTATTATGAGGTTCCAGCAAAAATGGATGGATGAACATAAAAAAATCAATGCCAAGAGAAAGTTCAAGGCTCCTGATTCAATCAATTTAGATGATGATGATGTAGAAGGTCCTGAACCTGCACCCTTGAAGAGGCCAATTGGGAGAAAGGCTGCAAAGGAAGTGATCAAAAAGGCAAAATCCAAAGAACAGATATGGAATGTAGAAGAATCTCGCCATATGGCACGAGCAGTTGAGCACAGTACTATCATGCCTTTGTTGTGTGAAGAAACTAAAAAACTTGCGAAGCACGCACTTCAGTCACCCTGCCTGTGTGAATTGAACGAACTGACAATAAGTACAACCATCTTGTTCAGAGATGTTTTTGAAGCTCTCCCCAAGATCACCAAACAAGTATGCAGCCACCCAATTTCTGGTTTTGGCAAGAACACCTTTCGAAACATTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

421

Amino Acids

47.67

Weight (kDa)

9.7

Isoelectric Point (pI)

50.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 265 - 349 1.4e-08 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 624
Acc36I ACCTGC 2 cut(s) 481, 943
AccB1I GGYRCC 1 cut(s) 159
AccB7I CCANNNNNTGG 1 cut(s) 1229
AccII CGCG 3 cut(s) 89, 108, 157
AciI CCGC 9 cut(s) 22, 89, 106, 123, 157, 194, 308, 379, 452
AclWI GGATC 4 cut(s) 211, 318, 346, 709
AcsI RAATTY 3 cut(s) 424, 459, 618
AcuI CTGAAG 2 cut(s) 528, 1097
AfaI GTAC 5 cut(s) 187, 716, 801, 1060, 1156
AfiI CCNNNNNNNGG 5 cut(s) 200, 697, 814, 948, 1229
AgsI TTSAA 9 cut(s) 430, 464, 679, 775, 883, 897, 946, 1138, 1184
AjnI CCWGG 1 cut(s) 346
AjuI GAANNNNNNNTTGG 2 cut(s) 863, 895
AluBI AGCT 4 cut(s) 512, 545, 740, 1187
AluI AGCT 4 cut(s) 512, 545, 740, 1187
Alw21I GWGCWC 2 cut(s) 747, 1056
Alw26I GTCTC 2 cut(s) 207, 288
AlwI GGATC 4 cut(s) 211, 318, 346, 709
AoxI GGCC 4 cut(s) 90, 239, 363, 950
ApeKI GCWGC 5 cut(s) 55, 545, 611, 968, 1215
ApoI RAATTY 3 cut(s) 424, 459, 618
AseI ATTAAT 1 cut(s) 552
AspLEI GCGC 2 cut(s) 89, 110
AspS9I GGNCC 3 cut(s) 125, 364, 926
AsuC2I CCSGG 1 cut(s) 320
AsuHPI GGTGA 5 cut(s) 55, 308, 336, 1110, 1192
AsuII TTCGAA 1 cut(s) 1252
AvaII GGWCC 2 cut(s) 125, 926
BanI GGYRCC 1 cut(s) 159
BauI CACGAG 1 cut(s) 1041
Bbv12I GWGCWC 2 cut(s) 747, 1056
BbvI GCAGC 5 cut(s) 67, 532, 623, 955, 1227
BccI CCATC 4 cut(s) 161, 264, 838, 1169
BceAI ACGGC 1 cut(s) 316
BcgI CGANNNNNNTGC 4 cut(s) 153, 187, 287, 321
BciT130I CCWGG 1 cut(s) 348
BclI TGATCA 2 cut(s) 529, 981
BcnI CCSGG 1 cut(s) 320
BcoDI GTCTC 2 cut(s) 207, 288
BfaI CTAG 1 cut(s) 635
BfmI CTRYAG 1 cut(s) 488
BfuAI ACCTGC 2 cut(s) 481, 943
BisI GCNGC 8 cut(s) 22, 56, 90, 158, 546, 612, 969, 1216
BlsI GCNGC 8 cut(s) 23, 57, 91, 159, 547, 613, 970, 1217
BmcAI AGTACT 1 cut(s) 1060
Bme1390I CCNGG 2 cut(s) 320, 348
Bme18I GGWCC 2 cut(s) 125, 926
BmgT120I GGNCC 3 cut(s) 125, 364, 926
BmiI GGNNCC 5 cut(s) 144, 161, 495, 830, 888
BmrFI CCNGG 2 cut(s) 320, 348
BmsI GCATC 6 cut(s) 332, 360, 457, 640, 662, 737
Bpu14I TTCGAA 1 cut(s) 1252
BpuEI CTTGAG 2 cut(s) 357, 498
BpuMI CCSGG 1 cut(s) 320
BsaJI CCNNGG 2 cut(s) 391, 520
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 5 cut(s) 200, 697, 814, 948, 1229
Bse118I RCCGGY 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 598
Bse3DI GCAATG 2 cut(s) 310, 442
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 2 cut(s) 391, 520
BseGI GGATG 3 cut(s) 655, 849, 853
BseLI CCNNNNNNNGG 5 cut(s) 200, 697, 814, 948, 1229
BseMI GCAATG 2 cut(s) 310, 442
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 598
BseXI GCAGC 5 cut(s) 67, 532, 623, 955, 1227
BsgI GTGCAG 1 cut(s) 921
Bsh1236I CGCG 3 cut(s) 89, 108, 157
BshFI GGCC 4 cut(s) 92, 241, 365, 952
BshNI GGYRCC 1 cut(s) 159
BsiHKAI GWGCWC 2 cut(s) 747, 1056
BsiSI CCGG 2 cut(s) 136, 319
BslI CCNNNNNNNGG 5 cut(s) 200, 697, 814, 948, 1229
BsmAI GTCTC 2 cut(s) 207, 288
BsmBI CGTCTC 1 cut(s) 288
BsmI GAATGC 1 cut(s) 89
BsnI GGCC 4 cut(s) 92, 241, 365, 952
Bsp119I TTCGAA 1 cut(s) 1252
Bsp1286I GDGCHC 2 cut(s) 747, 1056
Bsp143I GATC 7 cut(s) 203, 310, 338, 529, 701, 981, 1197
Bsp19I CCATGG 1 cut(s) 520
BspACI CCGC 9 cut(s) 22, 89, 106, 123, 157, 194, 308, 379, 452
BspANI GGCC 4 cut(s) 92, 241, 365, 952
BspCNI CTCAG 1 cut(s) 63
BspFNI CGCG 3 cut(s) 89, 108, 157
BspLI GGNNCC 5 cut(s) 144, 161, 495, 830, 888
BspMAI CTGCAG 1 cut(s) 492
BspMI ACCTGC 2 cut(s) 481, 943
BspPI GGATC 4 cut(s) 211, 318, 346, 709
BspT104I TTCGAA 1 cut(s) 1252
BspT107I GGYRCC 1 cut(s) 159
BsrDI GCAATG 2 cut(s) 310, 442
BsrFI RCCGGY 1 cut(s) 135
BsrI ACTGG 1 cut(s) 598
BssAI RCCGGY 1 cut(s) 135
BssECI CCNNGG 2 cut(s) 391, 520
BssMI GATC 7 cut(s) 203, 310, 338, 529, 701, 981, 1197
BssSI CACGAG 1 cut(s) 1041
BssT1I CCWWGG 2 cut(s) 391, 520
Bst2BI CACGAG 1 cut(s) 1041
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 3 cut(s) 44, 665, 1058
Bst6I CTCTTC 2 cut(s) 392, 941
BstBI TTCGAA 1 cut(s) 1252
BstC8I GCNNGC 3 cut(s) 19, 141, 1107
BstDEI CTNAG 1 cut(s) 71
BstDSI CCRYGG 1 cut(s) 520
BstENI CCTNNNNNAGG 2 cut(s) 695, 946
BstF5I GGATG 3 cut(s) 655, 849, 853
BstFNI CGCG 3 cut(s) 89, 108, 157
BstHHI GCGC 2 cut(s) 89, 110
BstKTI GATC 7 cut(s) 206, 313, 341, 532, 704, 984, 1200
BstMAI GTCTC 2 cut(s) 207, 288
BstMBI GATC 7 cut(s) 203, 310, 338, 529, 701, 981, 1197
BstMWI GCNNNNNNNGC 4 cut(s) 86, 149, 180, 1106
BstNI CCWGG 1 cut(s) 348
BstSCI CCNGG 2 cut(s) 318, 346
BstSFI CTRYAG 1 cut(s) 488
BstUI CGCG 3 cut(s) 89, 108, 157
BstV1I GCAGC 5 cut(s) 67, 532, 623, 955, 1227
BstX2I RGATCY 2 cut(s) 203, 701
BstXI CCANNNNNNTGG 1 cut(s) 593
BstYI RGATCY 2 cut(s) 203, 701
BsuRI GGCC 4 cut(s) 92, 241, 365, 952
BtgI CCRYGG 1 cut(s) 520
BtgZI GCGATG 2 cut(s) 233, 639
BtsCI GGATG 3 cut(s) 655, 849, 853
BveI ACCTGC 2 cut(s) 481, 943
Cac8I GCNNGC 3 cut(s) 19, 141, 1107
CfoI GCGC 2 cut(s) 89, 110
Cfr10I RCCGGY 1 cut(s) 135
Cfr13I GGNCC 3 cut(s) 125, 364, 926
CpoI CGGWCCG 1 cut(s) 125
CseI GACGC 1 cut(s) 141
Csp6I GTAC 5 cut(s) 186, 715, 800, 1059, 1155
CspI CGGWCCG 1 cut(s) 125
CviAII CATG 2 cut(s) 521, 1066
CviQI GTAC 5 cut(s) 186, 715, 800, 1059, 1155
DdeI CTNAG 1 cut(s) 71
DpnI GATC 7 cut(s) 205, 312, 340, 531, 703, 983, 1199
DpnII GATC 7 cut(s) 203, 310, 338, 529, 701, 981, 1197
Eam1104I CTCTTC 2 cut(s) 392, 941
EarI CTCTTC 2 cut(s) 392, 941
EciI GGCGGA 1 cut(s) 183
Eco130I CCWWGG 2 cut(s) 391, 520
Eco147I AGGCCT 1 cut(s) 241
Eco47I GGWCC 2 cut(s) 125, 926
Eco57I CTGAAG 2 cut(s) 528, 1097
EcoNI CCTNNNNNAGG 2 cut(s) 695, 946
EcoO109I RGGNCCY 1 cut(s) 926
EcoRII CCWGG 1 cut(s) 346
EcoT14I CCWWGG 2 cut(s) 391, 520
EcoT22I ATGCAT 1 cut(s) 655
ErhI CCWWGG 2 cut(s) 391, 520
Esp3I CGTCTC 1 cut(s) 288
FaeI CATG 2 cut(s) 524, 1069
FalI AAGNNNNNCTT 4 cut(s) 366, 398, 1232, 1264
FatI CATG 2 cut(s) 520, 1065
FauI CCCGC 1 cut(s) 445
FauNDI CATATG 1 cut(s) 1035
FbaI TGATCA 2 cut(s) 529, 981
Fnu4HI GCNGC 8 cut(s) 22, 56, 90, 158, 546, 612, 969, 1216
FokI GGATG 3 cut(s) 662, 856, 860
Fsp4HI GCNGC 8 cut(s) 22, 56, 90, 158, 546, 612, 969, 1216
FspBI CTAG 1 cut(s) 635
GlaI GCGC 2 cut(s) 88, 109
GluI GCNGC 8 cut(s) 22, 56, 90, 158, 546, 612, 969, 1216
HaeIII GGCC 4 cut(s) 92, 241, 365, 952
HapII CCGG 2 cut(s) 136, 319
HgaI GACGC 1 cut(s) 141
HhaI GCGC 2 cut(s) 89, 110
Hin1II CATG 2 cut(s) 524, 1069
Hin6I GCGC 2 cut(s) 87, 108
HinP1I GCGC 2 cut(s) 87, 108
HinfI GANTC 4 cut(s) 231, 675, 893, 1025
HpaII CCGG 2 cut(s) 136, 319
HphI GGTGA 5 cut(s) 55, 308, 336, 1110, 1192
Hpy188III TCNNGA 9 cut(s) 286, 374, 464, 497, 533, 679, 775, 890, 929
Hpy99I CGWCG 3 cut(s) 157, 302, 336
HpyAV CCTTC 6 cut(s) 231, 263, 392, 691, 779, 917
HpyCH4III ACNGT 3 cut(s) 44, 665, 1058
HpyCH4V TGCA 9 cut(s) 417, 447, 490, 548, 611, 653, 938, 971, 1215
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 149, 180, 1106
HpyF3I CTNAG 1 cut(s) 71
Hsp92II CATG 2 cut(s) 524, 1069
HspAI GCGC 2 cut(s) 87, 108
Ksp22I TGATCA 2 cut(s) 529, 981
Kzo9I GATC 7 cut(s) 203, 310, 338, 529, 701, 981, 1197
LmnI GCTCC 4 cut(s) 148, 179, 196, 892
Lsp1109I GCAGC 5 cut(s) 67, 532, 623, 955, 1227
LweI GCATC 6 cut(s) 332, 360, 457, 640, 662, 737
MaeI CTAG 1 cut(s) 635
MaeIII GTNAC 2 cut(s) 286, 1116
MalI GATC 7 cut(s) 205, 312, 340, 531, 703, 983, 1199
MboI GATC 7 cut(s) 203, 310, 338, 529, 701, 981, 1197
MboII GAAGA 7 cut(s) 42, 379, 548, 589, 958, 1034, 1094
MfeI CAATTG 1 cut(s) 954
MflI RGATCY 2 cut(s) 203, 701
MhlI GDGCHC 2 cut(s) 747, 1056
MluCI AATT 8 cut(s) 424, 459, 549, 618, 901, 954, 1133, 1224
MmeI TCCRAC 2 cut(s) 170, 208
Mph1103I ATGCAT 1 cut(s) 655
MseI TTAA 2 cut(s) 552, 1264
MslI CAYNNNNRTG 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 452
MspI CCGG 2 cut(s) 136, 319
MspR9I CCNGG 2 cut(s) 320, 348
MunI CAATTG 1 cut(s) 954
Mva1269I GAATGC 1 cut(s) 89
MvaI CCWGG 1 cut(s) 348
MvnI CGCG 3 cut(s) 89, 108, 157
MwoI GCNNNNNNNGC 4 cut(s) 86, 149, 180, 1106
NciI CCSGG 1 cut(s) 320
NcoI CCATGG 1 cut(s) 520
NdeI CATATG 1 cut(s) 1035
NdeII GATC 7 cut(s) 203, 310, 338, 529, 701, 981, 1197
NlaIII CATG 2 cut(s) 524, 1069
NlaIV GGNNCC 5 cut(s) 144, 161, 495, 830, 888
NmuCI GTSAC 2 cut(s) 286, 1116
NsiI ATGCAT 1 cut(s) 655
NspV TTCGAA 1 cut(s) 1252
PceI AGGCCT 1 cut(s) 241
PctI GAATGC 1 cut(s) 89
PfeI GAWTC 4 cut(s) 231, 675, 893, 1025
PflFI GACNNNGTC 1 cut(s) 151
PflMI CCANNNNNTGG 1 cut(s) 1229
PkrI GCNGC 8 cut(s) 23, 57, 91, 159, 547, 613, 970, 1217
PpuMI RGGWCCY 1 cut(s) 926
PshBI ATTAAT 1 cut(s) 552
PsiI TTATAA 1 cut(s) 624
Psp5II RGGWCCY 1 cut(s) 926
Psp6I CCWGG 1 cut(s) 346
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 5 cut(s) 144, 161, 495, 830, 888
PspPI GGNCC 3 cut(s) 125, 364, 926
PspPPI RGGWCCY 1 cut(s) 926
PstI CTGCAG 1 cut(s) 492
PsuI RGATCY 2 cut(s) 203, 701
PsyI GACNNNGTC 1 cut(s) 151
RsaI GTAC 5 cut(s) 187, 716, 801, 1060, 1156
RsaNI GTAC 5 cut(s) 186, 715, 800, 1059, 1155
RseI CAYNNNNRTG 1 cut(s) 165
Rsr2I CGGWCCG 1 cut(s) 125
RsrII CGGWCCG 1 cut(s) 125
SaqAI TTAA 2 cut(s) 552, 1264
SatI GCNGC 8 cut(s) 22, 56, 90, 158, 546, 612, 969, 1216
Sau3AI GATC 7 cut(s) 203, 310, 338, 529, 701, 981, 1197
Sau96I GGNCC 3 cut(s) 125, 364, 926
ScaI AGTACT 1 cut(s) 1060
ScrFI CCNGG 2 cut(s) 320, 348
SduI GDGCHC 2 cut(s) 747, 1056
SfaNI GCATC 6 cut(s) 332, 360, 457, 640, 662, 737
SfcI CTRYAG 1 cut(s) 488
SfuI TTCGAA 1 cut(s) 1252
SinI GGWCC 2 cut(s) 125, 926
SmiMI CAYNNNNRTG 1 cut(s) 165
SmlI CTYRAG 2 cut(s) 372, 513
SmoI CTYRAG 2 cut(s) 372, 513
Sse9I AATT 8 cut(s) 424, 459, 549, 618, 901, 954, 1133, 1224
SseBI AGGCCT 1 cut(s) 241
SsiI CCGC 9 cut(s) 22, 89, 106, 123, 157, 194, 308, 379, 452
SspMI CTAG 1 cut(s) 635
StuI AGGCCT 1 cut(s) 241
StyD4I CCNGG 2 cut(s) 318, 346
StyI CCWWGG 2 cut(s) 391, 520
TaaI ACNGT 3 cut(s) 44, 665, 1058
TaqI TCGA 5 cut(s) 11, 244, 326, 354, 1252
TasI AATT 8 cut(s) 424, 459, 549, 618, 901, 954, 1133, 1224
TatI WGTACW 5 cut(s) 185, 714, 799, 1058, 1154
TauI GCSGC 3 cut(s) 24, 92, 160
TfiI GAWTC 4 cut(s) 231, 675, 893, 1025
Tru1I TTAA 2 cut(s) 552, 1264
Tru9I TTAA 2 cut(s) 552, 1264
TseFI GTSAC 2 cut(s) 286, 1116
TseI GCWGC 5 cut(s) 55, 545, 611, 968, 1215
Tsp45I GTSAC 2 cut(s) 286, 1116
TspDTI ATGAA 2 cut(s) 738, 864
Tth111I GACNNNGTC 1 cut(s) 151
Van91I CCANNNNNTGG 1 cut(s) 1229
VpaK11BI GGWCC 2 cut(s) 125, 926
VspI ATTAAT 1 cut(s) 552
XagI CCTNNNNNAGG 2 cut(s) 695, 946
XapI RAATTY 3 cut(s) 424, 459, 618
XcmI CCANNNNNNNNNTGG 1 cut(s) 1226
XspI CTAG 1 cut(s) 635
ZrmI AGTACT 1 cut(s) 1060
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.