Rh1BG028700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0017452
Physical Location & Seq
Reverse (-)
3960425 .. 3960866
442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG028700.1

Sequence Viewer

Length: 333 bp
ATGACCACCTCGAACGCCAACCGCCAGAGAAGAAACCATAACAGTAGTGCCACGCAGCCATTCACCAATCTGAGAGAAGCAGAATGCGCGGCCTCCATACTTGACGGCTCCAAAGGAGGTAGCGGTCTGAATGACCGGCTGGCTCCGACAGCGTCGCGGCACCGAGATGGTTGCTCCGATTGCTGTACTGCTCAGCCAATCGGATCTGACAGAGACAGAGTTTCAGTCAGATTCCGAAGGCCTCGACATCACCACCATCAGAGAAGTGAAGGAGGTTTAGTTTTCGTGACCGGAGACGACGGCGACGAGGATCATCACCGGGCATCGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.13

Weight (kDa)

8.97

Isoelectric Point (pI)

55.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 159
AccII CGCG 2 cut(s) 89, 157
AciI CCGC 4 cut(s) 22, 89, 123, 157
AclWI GGATC 2 cut(s) 211, 318
AfaI GTAC 1 cut(s) 187
Alw26I GTCTC 2 cut(s) 207, 288
AlwI GGATC 2 cut(s) 211, 318
AoxI GGCC 2 cut(s) 90, 239
ApeKI GCWGC 1 cut(s) 55
AspLEI GCGC 1 cut(s) 89
AsuC2I CCSGG 1 cut(s) 320
AsuHPI GGTGA 3 cut(s) 55, 242, 308
BanI GGYRCC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 67
BccI CCATC 2 cut(s) 161, 264
BceAI ACGGC 2 cut(s) 121, 316
BcgI CGANNNNNNTGC 2 cut(s) 153, 187
BcnI CCSGG 1 cut(s) 320
BcoDI GTCTC 2 cut(s) 207, 288
BisI GCNGC 3 cut(s) 56, 90, 158
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 3 cut(s) 57, 91, 159
Bme1390I CCNGG 1 cut(s) 320
BmiI GGNNCC 3 cut(s) 109, 144, 161
BmrFI CCNGG 1 cut(s) 320
Bpu1102I GCTNAGC 1 cut(s) 192
BpuMI CCSGG 1 cut(s) 320
BsaWI WCCGGW 1 cut(s) 290
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bse118I RCCGGY 1 cut(s) 135
BseMII CTCAG 2 cut(s) 62, 206
BseXI GCAGC 1 cut(s) 67
Bsh1236I CGCG 2 cut(s) 89, 157
BshFI GGCC 2 cut(s) 92, 241
BshNI GGYRCC 1 cut(s) 159
BsiSI CCGG 3 cut(s) 136, 291, 319
BsmAI GTCTC 2 cut(s) 207, 288
BsmBI CGTCTC 1 cut(s) 288
BsmI GAATGC 1 cut(s) 89
BsnI GGCC 2 cut(s) 92, 241
Bsp143I GATC 2 cut(s) 203, 310
Bsp1720I GCTNAGC 1 cut(s) 192
BspACI CCGC 4 cut(s) 22, 89, 123, 157
BspANI GGCC 2 cut(s) 92, 241
BspCNI CTCAG 2 cut(s) 63, 205
BspFNI CGCG 2 cut(s) 89, 157
BspLI GGNNCC 3 cut(s) 109, 144, 161
BspPI GGATC 2 cut(s) 211, 318
BspT107I GGYRCC 1 cut(s) 159
BsrFI RCCGGY 1 cut(s) 135
BssAI RCCGGY 1 cut(s) 135
BssMI GATC 2 cut(s) 203, 310
Bst4CI ACNGT 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 2 cut(s) 71, 192
BstFNI CGCG 2 cut(s) 89, 157
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 2 cut(s) 206, 313
BstMAI GTCTC 2 cut(s) 207, 288
BstMBI GATC 2 cut(s) 203, 310
BstMWI GCNNNNNNNGC 3 cut(s) 86, 149, 180
BstSCI CCNGG 1 cut(s) 318
BstUI CGCG 2 cut(s) 89, 157
BstV1I GCAGC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 203
BstYI RGATCY 1 cut(s) 203
BsuRI GGCC 2 cut(s) 92, 241
Cac8I GCNNGC 1 cut(s) 141
CfoI GCGC 1 cut(s) 89
Cfr10I RCCGGY 1 cut(s) 135
CseI GACGC 1 cut(s) 141
Csp6I GTAC 1 cut(s) 186
CviJI RGCY 7 cut(s) 58, 92, 108, 139, 143, 196, 241
CviKI_1 RGCY 7 cut(s) 58, 92, 108, 139, 143, 196, 241
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 2 cut(s) 71, 192
DpnI GATC 2 cut(s) 205, 312
DpnII GATC 2 cut(s) 203, 310
Eco147I AGGCCT 1 cut(s) 241
Esp3I CGTCTC 1 cut(s) 288
FaiI YATR 2 cut(s) 39, 98
Fnu4HI GCNGC 3 cut(s) 56, 90, 158
Fsp4HI GCNGC 3 cut(s) 56, 90, 158
GlaI GCGC 1 cut(s) 88
GluI GCNGC 3 cut(s) 56, 90, 158
HaeIII GGCC 2 cut(s) 92, 241
HapII CCGG 3 cut(s) 136, 291, 319
HgaI GACGC 1 cut(s) 141
HhaI GCGC 1 cut(s) 89
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HinfI GANTC 1 cut(s) 231
HpaII CCGG 3 cut(s) 136, 291, 319
HphI GGTGA 3 cut(s) 55, 242, 308
Hpy188I TCNGA 9 cut(s) 72, 129, 147, 178, 203, 208, 230, 236, 261
Hpy188III TCNNGA 1 cut(s) 286
Hpy99I CGWCG 3 cut(s) 157, 302, 308
HpyAV CCTTC 2 cut(s) 231, 263
HpyCH4III ACNGT 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 149, 180
HpyF3I CTNAG 2 cut(s) 71, 192
HspAI GCGC 1 cut(s) 87
Kzo9I GATC 2 cut(s) 203, 310
LmnI GCTCC 3 cut(s) 113, 148, 179
LpnPI CCDG 4 cut(s) 38, 125, 149, 304
Lsp1109I GCAGC 1 cut(s) 67
MaeIII GTNAC 1 cut(s) 286
MalI GATC 2 cut(s) 205, 312
MboI GATC 2 cut(s) 203, 310
MboII GAAGA 1 cut(s) 42
MflI RGATCY 1 cut(s) 203
MmeI TCCRAC 1 cut(s) 170
MnlI CCTC 7 cut(s) 19, 103, 110, 252, 266, 301, 321
MslI CAYNNNNRTG 2 cut(s) 165, 328
MspI CCGG 3 cut(s) 136, 291, 319
MspR9I CCNGG 1 cut(s) 320
Mva1269I GAATGC 1 cut(s) 89
MvnI CGCG 2 cut(s) 89, 157
MwoI GCNNNNNNNGC 3 cut(s) 86, 149, 180
NciI CCSGG 1 cut(s) 320
NdeII GATC 2 cut(s) 203, 310
NlaIV GGNNCC 3 cut(s) 109, 144, 161
NmuCI GTSAC 1 cut(s) 286
PceI AGGCCT 1 cut(s) 241
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PctI GAATGC 1 cut(s) 89
PfeI GAWTC 1 cut(s) 231
PflFI GACNNNGTC 1 cut(s) 151
PkrI GCNGC 3 cut(s) 57, 91, 159
PspN4I GGNNCC 3 cut(s) 109, 144, 161
PsuI RGATCY 1 cut(s) 203
PsyI GACNNNGTC 1 cut(s) 151
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
RseI CAYNNNNRTG 2 cut(s) 165, 328
SatI GCNGC 3 cut(s) 56, 90, 158
Sau3AI GATC 2 cut(s) 203, 310
ScrFI CCNGG 1 cut(s) 320
SetI ASST 4 cut(s) 11, 121, 277, 332
SmiMI CAYNNNNRTG 2 cut(s) 165, 328
SseBI AGGCCT 1 cut(s) 241
SsiI CCGC 4 cut(s) 22, 89, 123, 157
StuI AGGCCT 1 cut(s) 241
StyD4I CCNGG 1 cut(s) 318
TaaI ACNGT 1 cut(s) 44
TaqI TCGA 3 cut(s) 11, 244, 326
TatI WGTACW 1 cut(s) 185
TauI GCSGC 2 cut(s) 92, 160
TfiI GAWTC 1 cut(s) 231
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 286
Tth111I GACNNNGTC 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.