Rh1CG092100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0017452
Physical Location & Seq
Reverse (-)
19699542 .. 19710379
10838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG092100.1

Sequence Viewer

Length: 312 bp
ATGAACGGACTCGACCCTCGAACTCGCGGCGGTGATGGCGACTTCGGATCTATGGGTGTAAGATCTATTATTTGTGGATCTGAGAACTTTTTTTATGGGGTTGGTCTGACACGAAATTTGTTTTGTGGACCGAAACTTGTGGATCTGAGAGGAAATTTGAAAGTCAGACAGCATTGTACAGCGGGTAAAATTCAAGATGCCAAATCTGTAAATCCTCTGCAGGTTCCAGAGGGGTCTGAAGCTCAAGCCCATGGCTTTGATCAAGAAGTTGCTCAAGCTTTGTTGAGTTTCCTATTTCATAGACCCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.15

Weight (kDa)

7.71

Isoelectric Point (pI)

26.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 211
AccII CGCG 1 cut(s) 27
AciI CCGC 3 cut(s) 27, 30, 182
AclWI GGATC 3 cut(s) 55, 85, 150
AcsI RAATTY 3 cut(s) 115, 154, 189
AcuI CTGAAG 1 cut(s) 258
AfaI GTAC 1 cut(s) 178
AgsI TTSAA 2 cut(s) 160, 194
AluBI AGCT 2 cut(s) 242, 278
AluI AGCT 2 cut(s) 242, 278
AlwI GGATC 3 cut(s) 55, 85, 150
ApoI RAATTY 3 cut(s) 115, 154, 189
ArsI GACNNNNNNTTYG 2 cut(s) 100, 132
AspS9I GGNCC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 44
AvaII GGWCC 1 cut(s) 128
BccI CCATC 1 cut(s) 29
BclI TGATCA 1 cut(s) 259
BfmI CTRYAG 1 cut(s) 218
BfuAI ACCTGC 1 cut(s) 211
BglII AGATCT 1 cut(s) 62
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 225
BmsI GCATC 1 cut(s) 187
BpuEI CTTGAG 2 cut(s) 228, 258
BsaJI CCNNGG 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 250
BseMII CTCAG 2 cut(s) 72, 137
Bsh1236I CGCG 1 cut(s) 27
Bsp1407I TGTACA 1 cut(s) 176
Bsp143I GATC 5 cut(s) 47, 62, 77, 142, 259
Bsp19I CCATGG 1 cut(s) 250
BspACI CCGC 3 cut(s) 27, 30, 182
BspCNI CTCAG 2 cut(s) 73, 138
BspFNI CGCG 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 225
BspMAI CTGCAG 1 cut(s) 222
BspMI ACCTGC 1 cut(s) 211
BspPI GGATC 3 cut(s) 55, 85, 150
BsrGI TGTACA 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 5 cut(s) 47, 62, 77, 142, 259
BssT1I CCWWGG 1 cut(s) 250
BstAUI TGTACA 1 cut(s) 176
BstDEI CTNAG 2 cut(s) 81, 146
BstDSI CCRYGG 1 cut(s) 250
BstFNI CGCG 1 cut(s) 27
BstKTI GATC 5 cut(s) 50, 65, 80, 145, 262
BstMBI GATC 5 cut(s) 47, 62, 77, 142, 259
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstSFI CTRYAG 1 cut(s) 218
BstUI CGCG 1 cut(s) 27
BstX2I RGATCY 4 cut(s) 47, 62, 77, 142
BstYI RGATCY 4 cut(s) 47, 62, 77, 142
BtgI CCRYGG 1 cut(s) 250
BveI ACCTGC 1 cut(s) 211
Cfr13I GGNCC 1 cut(s) 128
Csp6I GTAC 1 cut(s) 177
CviAII CATG 1 cut(s) 251
CviJI RGCY 4 cut(s) 242, 248, 255, 278
CviKI_1 RGCY 4 cut(s) 242, 248, 255, 278
CviQI GTAC 1 cut(s) 177
DdeI CTNAG 2 cut(s) 81, 146
DpnI GATC 5 cut(s) 49, 64, 79, 144, 261
DpnII GATC 5 cut(s) 47, 62, 77, 142, 259
Eco130I CCWWGG 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 1 cut(s) 254
FaiI YATR 4 cut(s) 53, 96, 252, 300
FatI CATG 1 cut(s) 250
FauI CCCGC 1 cut(s) 175
FbaI TGATCA 1 cut(s) 259
Fnu4HI GCNGC 1 cut(s) 28
Fsp4HI GCNGC 1 cut(s) 28
GluI GCNGC 1 cut(s) 28
Hin1II CATG 1 cut(s) 254
HindIII AAGCTT 1 cut(s) 276
HinfI GANTC 1 cut(s) 9
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 128
Hpy188I TCNGA 6 cut(s) 47, 82, 108, 147, 167, 238
Hpy188III TCNNGA 3 cut(s) 194, 227, 263
Hpy8I GTNNAC 1 cut(s) 128
HpyCH4V TGCA 1 cut(s) 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 2 cut(s) 81, 146
Hsp92II CATG 1 cut(s) 254
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 5 cut(s) 47, 62, 77, 142, 259
LpnPI CCDG 2 cut(s) 206, 240
LweI GCATC 1 cut(s) 187
MalI GATC 5 cut(s) 49, 64, 79, 144, 261
MboI GATC 5 cut(s) 47, 62, 77, 142, 259
MflI RGATCY 4 cut(s) 47, 62, 77, 142
MluCI AATT 3 cut(s) 115, 154, 189
MlyI GAGTC 1 cut(s) 3
MnlI CCTC 4 cut(s) 27, 143, 223, 225
MspA1I CMGCKG 1 cut(s) 182
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 36
NcoI CCATGG 1 cut(s) 250
NdeII GATC 5 cut(s) 47, 62, 77, 142, 259
NlaIII CATG 1 cut(s) 254
NlaIV GGNNCC 1 cut(s) 225
PkrI GCNGC 1 cut(s) 29
PleI GAGTC 1 cut(s) 3
PpsI GAGTC 1 cut(s) 3
PspN4I GGNNCC 1 cut(s) 225
PspPI GGNCC 1 cut(s) 128
PstI CTGCAG 1 cut(s) 222
PsuI RGATCY 4 cut(s) 47, 62, 77, 142
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
SatI GCNGC 1 cut(s) 28
Sau3AI GATC 5 cut(s) 47, 62, 77, 142, 259
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 1 cut(s) 3
SetI ASST 3 cut(s) 225, 244, 280
SfaNI GCATC 1 cut(s) 187
SfcI CTRYAG 1 cut(s) 218
SinI GGWCC 1 cut(s) 128
SmlI CTYRAG 2 cut(s) 243, 273
SmoI CTYRAG 2 cut(s) 243, 273
Sse9I AATT 3 cut(s) 115, 154, 189
SsiI CCGC 3 cut(s) 27, 30, 182
StyI CCWWGG 1 cut(s) 250
TaqI TCGA 2 cut(s) 12, 19
TaqII GACCGA 1 cut(s) 145
TasI AATT 3 cut(s) 115, 154, 189
TatI WGTACW 1 cut(s) 176
TauI GCSGC 1 cut(s) 30
TspDTI ATGAA 2 cut(s) 17, 287
TspGWI ACGGA 1 cut(s) 21
VpaK11BI GGWCC 1 cut(s) 128
XapI RAATTY 3 cut(s) 115, 154, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.