Rh1BG289600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0017452
Physical Location & Seq
Reverse (-)
42534336 .. 42535140
805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG289600.1

Sequence Viewer

Length: 540 bp
ATGACCACCTCGAACGCCAACCGCCAGAGAAGAAACCATAACAGTAGTGCCACGCATCCATTCACCAATCTGAGAGAAGCAGAATGCGCGGCCTCCATACTTGACGGCTCCAAAGGAGGTAGCGGTCCGAATTACCGGCTGGCTCCGACAGCGCCGCGGCACCGAGATGGTTGCTCCGATTGCTGTACTGCTCCGCCAATCGGATCTGACAGAGACAGAGTTTCAGTCGGATTCCGAAGGCCTCGACATCACCACCATCAGAGAAGTGAAGGAGGTTTGGTTTTCGTGACCGGAGATGACGGCGACGAGGATCATCACCTGGCATCGAGGCGACAAGGATCATCACCAGGCTGTACTGCTCCACCAATCGGATCTGACAGAGACAGAGTTTCAGTCGGATTCCGAAGGCCTCGACATCGCCACCATCAGAGAAGTGAAGGAGGTTTGGTTTTCGTGACTGGAGACGACGGCGATGAGGATCATCACCGGGCATCGAGGCGACGAGGATCATCACCAGGCATCGAGGTCATGCTAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

19.58

Weight (kDa)

9.39

Isoelectric Point (pI)

70.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 159
AccII CGCG 2 cut(s) 89, 157
AciI CCGC 6 cut(s) 22, 89, 123, 155, 157, 194
AclWI GGATC 6 cut(s) 211, 318, 346, 379, 486, 514
AfaI GTAC 2 cut(s) 187, 355
AfiI CCNNNNNNNGG 2 cut(s) 200, 368
AjnI CCWGG 3 cut(s) 318, 346, 514
Alw26I GTCTC 3 cut(s) 207, 375, 456
AlwI GGATC 6 cut(s) 211, 318, 346, 379, 486, 514
AoxI GGCC 3 cut(s) 90, 239, 407
AspLEI GCGC 2 cut(s) 89, 154
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 488
AsuHPI GGTGA 6 cut(s) 55, 242, 308, 336, 476, 504
AvaII GGWCC 1 cut(s) 125
BanI GGYRCC 1 cut(s) 159
BccI CCATC 3 cut(s) 161, 264, 432
BceAI ACGGC 3 cut(s) 121, 316, 484
BcgI CGANNNNNNTGC 2 cut(s) 153, 187
BciT130I CCWGG 3 cut(s) 320, 348, 516
BcnI CCSGG 1 cut(s) 488
BcoDI GTCTC 3 cut(s) 207, 375, 456
BfaI CTAG 1 cut(s) 533
BfoI RGCGCY 1 cut(s) 155
BisI GCNGC 3 cut(s) 90, 155, 158
BlsI GCNGC 3 cut(s) 91, 156, 159
Bme1390I CCNGG 4 cut(s) 320, 348, 488, 516
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 3 cut(s) 109, 144, 161
BmrFI CCNGG 4 cut(s) 320, 348, 488, 516
BmsI GCATC 4 cut(s) 64, 332, 500, 528
BpmI CTGGAG 1 cut(s) 480
BpuMI CCSGG 1 cut(s) 488
BsaBI GATNNNNATC 1 cut(s) 477
BsaJI CCNNGG 1 cut(s) 155
BsaWI WCCGGW 1 cut(s) 290
BsaXI ACNNNNNCTCC 4 cut(s) 264, 294, 432, 462
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 368
Bse118I RCCGGY 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 463
Bse8I GATNNNNATC 1 cut(s) 477
BseBI CCWGG 3 cut(s) 320, 348, 516
BseDI CCNNGG 1 cut(s) 155
BseGI GGATG 1 cut(s) 55
BseJI GATNNNNATC 1 cut(s) 477
BseLI CCNNNNNNNGG 2 cut(s) 200, 368
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 463
Bsh1236I CGCG 2 cut(s) 89, 157
BshFI GGCC 3 cut(s) 92, 241, 409
BshNI GGYRCC 1 cut(s) 159
BsiSI CCGG 3 cut(s) 136, 291, 487
BslI CCNNNNNNNGG 2 cut(s) 200, 368
BsmAI GTCTC 3 cut(s) 207, 375, 456
BsmBI CGTCTC 1 cut(s) 456
BsmI GAATGC 1 cut(s) 89
BsnI GGCC 3 cut(s) 92, 241, 409
Bsp143I GATC 6 cut(s) 203, 310, 338, 371, 478, 506
BspACI CCGC 6 cut(s) 22, 89, 123, 155, 157, 194
BspANI GGCC 3 cut(s) 92, 241, 409
BspCNI CTCAG 1 cut(s) 63
BspFNI CGCG 2 cut(s) 89, 157
BspLI GGNNCC 3 cut(s) 109, 144, 161
BspPI GGATC 6 cut(s) 211, 318, 346, 379, 486, 514
BspT107I GGYRCC 1 cut(s) 159
BsrFI RCCGGY 1 cut(s) 135
BsrI ACTGG 1 cut(s) 463
BssAI RCCGGY 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 155
BssMI GATC 6 cut(s) 203, 310, 338, 371, 478, 506
Bst2UI CCWGG 3 cut(s) 320, 348, 516
Bst4CI ACNGT 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 71
BstDSI CCRYGG 1 cut(s) 155
BstF5I GGATG 1 cut(s) 55
BstFNI CGCG 2 cut(s) 89, 157
BstH2I RGCGCY 1 cut(s) 155
BstHHI GCGC 2 cut(s) 89, 154
BstKTI GATC 6 cut(s) 206, 313, 341, 374, 481, 509
BstMAI GTCTC 3 cut(s) 207, 375, 456
BstMBI GATC 6 cut(s) 203, 310, 338, 371, 478, 506
BstMWI GCNNNNNNNGC 3 cut(s) 86, 149, 180
BstNI CCWGG 3 cut(s) 320, 348, 516
BstSCI CCNGG 4 cut(s) 318, 346, 486, 514
BstUI CGCG 2 cut(s) 89, 157
BstX2I RGATCY 2 cut(s) 203, 371
BstYI RGATCY 2 cut(s) 203, 371
BsuRI GGCC 3 cut(s) 92, 241, 409
BtgI CCRYGG 1 cut(s) 155
BtgZI GCGATG 2 cut(s) 401, 486
BtsCI GGATG 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 141
CfoI GCGC 2 cut(s) 89, 154
Cfr10I RCCGGY 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 125
Cfr42I CCGCGG 1 cut(s) 158
CpoI CGGWCCG 1 cut(s) 125
Csp6I GTAC 2 cut(s) 186, 354
CspI CGGWCCG 1 cut(s) 125
CviAII CATG 1 cut(s) 529
CviJI RGCY 7 cut(s) 92, 108, 139, 143, 241, 351, 409
CviKI_1 RGCY 7 cut(s) 92, 108, 139, 143, 241, 351, 409
CviQI GTAC 2 cut(s) 186, 354
DdeI CTNAG 1 cut(s) 71
DpnI GATC 6 cut(s) 205, 312, 340, 373, 480, 508
DpnII GATC 6 cut(s) 203, 310, 338, 371, 478, 506
EciI GGCGGA 1 cut(s) 183
Eco147I AGGCCT 2 cut(s) 241, 409
Eco47I GGWCC 1 cut(s) 125
EcoRII CCWGG 3 cut(s) 318, 346, 514
Esp3I CGTCTC 1 cut(s) 456
FaeI CATG 1 cut(s) 532
FaiI YATR 3 cut(s) 39, 98, 530
FatI CATG 1 cut(s) 528
Fnu4HI GCNGC 3 cut(s) 90, 155, 158
FokI GGATG 1 cut(s) 42
Fsp4HI GCNGC 3 cut(s) 90, 155, 158
FspBI CTAG 1 cut(s) 533
GlaI GCGC 2 cut(s) 88, 153
GluI GCNGC 3 cut(s) 90, 155, 158
GsuI CTGGAG 1 cut(s) 480
HaeII RGCGCY 1 cut(s) 155
HaeIII GGCC 3 cut(s) 92, 241, 409
HapII CCGG 3 cut(s) 136, 291, 487
HhaI GCGC 2 cut(s) 89, 154
Hin1II CATG 1 cut(s) 532
Hin6I GCGC 2 cut(s) 87, 152
HinP1I GCGC 2 cut(s) 87, 152
HinfI GANTC 2 cut(s) 231, 399
HpaII CCGG 3 cut(s) 136, 291, 487
HphI GGTGA 6 cut(s) 55, 242, 308, 336, 476, 504
Hpy188III TCNNGA 2 cut(s) 286, 454
Hpy99I CGWCG 3 cut(s) 308, 470, 504
HpyAV CCTTC 4 cut(s) 231, 263, 399, 431
HpyCH4III ACNGT 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 149, 180
HpyF3I CTNAG 1 cut(s) 71
Hsp92II CATG 1 cut(s) 532
HspAI GCGC 2 cut(s) 87, 152
KspI CCGCGG 1 cut(s) 158
Kzo9I GATC 6 cut(s) 203, 310, 338, 371, 478, 506
LmnI GCTCC 5 cut(s) 113, 148, 179, 196, 364
LweI GCATC 4 cut(s) 64, 332, 500, 528
MaeI CTAG 1 cut(s) 533
MaeIII GTNAC 2 cut(s) 286, 454
MalI GATC 6 cut(s) 205, 312, 340, 373, 480, 508
MboI GATC 6 cut(s) 203, 310, 338, 371, 478, 506
MboII GAAGA 1 cut(s) 42
MflI RGATCY 2 cut(s) 203, 371
MluCI AATT 1 cut(s) 130
MmeI TCCRAC 3 cut(s) 170, 208, 376
MslI CAYNNNNRTG 2 cut(s) 165, 533
MspA1I CMGCKG 1 cut(s) 157
MspI CCGG 3 cut(s) 136, 291, 487
MspR9I CCNGG 4 cut(s) 320, 348, 488, 516
Mva1269I GAATGC 1 cut(s) 89
MvaI CCWGG 3 cut(s) 320, 348, 516
MvnI CGCG 2 cut(s) 89, 157
MwoI GCNNNNNNNGC 3 cut(s) 86, 149, 180
NciI CCSGG 1 cut(s) 488
NdeII GATC 6 cut(s) 203, 310, 338, 371, 478, 506
NlaIII CATG 1 cut(s) 532
NlaIV GGNNCC 3 cut(s) 109, 144, 161
NmuCI GTSAC 2 cut(s) 286, 454
PceI AGGCCT 2 cut(s) 241, 409
PctI GAATGC 1 cut(s) 89
PfeI GAWTC 2 cut(s) 231, 399
PkrI GCNGC 3 cut(s) 91, 156, 159
Psp6I CCWGG 3 cut(s) 318, 346, 514
PspGI CCWGG 3 cut(s) 318, 346, 514
PspN4I GGNNCC 3 cut(s) 109, 144, 161
PspPI GGNCC 1 cut(s) 125
PsuI RGATCY 2 cut(s) 203, 371
RsaI GTAC 2 cut(s) 187, 355
RsaNI GTAC 2 cut(s) 186, 354
RseI CAYNNNNRTG 2 cut(s) 165, 533
Rsr2I CGGWCCG 1 cut(s) 125
RsrII CGGWCCG 1 cut(s) 125
SacII CCGCGG 1 cut(s) 158
SatI GCNGC 3 cut(s) 90, 155, 158
Sau3AI GATC 6 cut(s) 203, 310, 338, 371, 478, 506
Sau96I GGNCC 1 cut(s) 125
ScrFI CCNGG 4 cut(s) 320, 348, 488, 516
SetI ASST 6 cut(s) 11, 121, 277, 321, 445, 528
SfaNI GCATC 4 cut(s) 64, 332, 500, 528
Sfr303I CCGCGG 1 cut(s) 158
SgrBI CCGCGG 1 cut(s) 158
SinI GGWCC 1 cut(s) 125
SmiMI CAYNNNNRTG 2 cut(s) 165, 533
Sse9I AATT 1 cut(s) 130
SseBI AGGCCT 2 cut(s) 241, 409
SsiI CCGC 6 cut(s) 22, 89, 123, 155, 157, 194
SspMI CTAG 1 cut(s) 533
StuI AGGCCT 2 cut(s) 241, 409
StyD4I CCNGG 4 cut(s) 318, 346, 486, 514
TaaI ACNGT 1 cut(s) 44
TaqI TCGA 6 cut(s) 11, 244, 326, 412, 494, 522
TasI AATT 1 cut(s) 130
TatI WGTACW 2 cut(s) 185, 353
TauI GCSGC 3 cut(s) 92, 157, 160
TfiI GAWTC 2 cut(s) 231, 399
TseFI GTSAC 2 cut(s) 286, 454
Tsp45I GTSAC 2 cut(s) 286, 454
VpaK11BI GGWCC 1 cut(s) 125
XspI CTAG 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.