RLG00000003654

Fanconi-associated nuclease 1 homolog

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
51305670 .. 51306941
1272 bp
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UTR
Exon/CDS
Intron
RLM00000003654

Sequence Viewer

Length: 489 bp
ATGTGCAACCCATTACTACCTAGTATGGTTTTGCACAGAACAGGATCCTGTGTTAGGATATCTTCAAATGCGGAGTCCCTTATCTGGCGTGCTGAGAGGCTTTTCTTCCTGAATGCTCGAGATGATTTGCTTGGCTATGAAGAGGTGTCCATTTATCTTTATGCAAAAGTAAAGATGCCCACGCTTGCCTTTACTATATATAATGGTTTTGCTTTGCAGGCTATTGAAGTGGCACAAACAGTTGATGAAGCTCTTGATGGAAGCAACACTAGATTGGTCTTAAAGTGCATAAAGATAGCTGATTCCCATTTATCCAATCCGGTTCAATCCTTGACCTTTGAATCAATGGCTCCATTCCTTTCCCACTTTTCAGCAACATTTGTCTACTCAAAAGTGGTTTTGCTAGGAATATCTTTTCTTGAGCGTGAGCATAGCTTCCTCAGTGAAGAGATAGCTTTGACAGGCTTTGGCATATTCACTCCACCTTGA

Protein Analysis

163

Amino Acids

18.07

Weight (kDa)

5.51

Isoelectric Point (pI)

34.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 384
AciI CCGC 1 cut(s) 71
AclWI GGATC 2 cut(s) 39, 52
AfiI CCNNNNNNNGG 2 cut(s) 54, 84
AgsI TTSAA 4 cut(s) 66, 227, 326, 341
AluBI AGCT 4 cut(s) 251, 299, 435, 455
AluI AGCT 4 cut(s) 251, 299, 435, 455
AlwI GGATC 2 cut(s) 39, 52
Ama87I CYCGRG 1 cut(s) 117
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
AvaI CYCGRG 1 cut(s) 117
BamHI GGATCC 1 cut(s) 44
BccI CCATC 1 cut(s) 251
BfaI CTAG 3 cut(s) 21, 270, 404
BmeT110I CYCGRG 1 cut(s) 117
BmiI GGNNCC 2 cut(s) 46, 351
BmsI GCATC 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 440
BsaWI WCCGGW 1 cut(s) 319
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 84
BseLI CCNNNNNNNGG 2 cut(s) 54, 84
BseMII CTCAG 2 cut(s) 84, 454
BsiHKCI CYCGRG 1 cut(s) 117
BsiSI CCGG 1 cut(s) 320
BslFI GGGAC 1 cut(s) 61
BslI CCNNNNNNNGG 2 cut(s) 54, 84
BsmFI GGGAC 1 cut(s) 61
BsmI GAATGC 1 cut(s) 118
BsoBI CYCGRG 1 cut(s) 117
Bsp143I GATC 1 cut(s) 44
BspACI CCGC 1 cut(s) 71
BspCNI CTCAG 2 cut(s) 85, 453
BspLI GGNNCC 2 cut(s) 46, 351
BspPI GGATC 2 cut(s) 39, 52
BssMI GATC 1 cut(s) 44
Bst4CI ACNGT 1 cut(s) 241
Bst6I CTCTTC 2 cut(s) 135, 441
BstC8I GCNNGC 3 cut(s) 90, 186, 219
BstDEI CTNAG 2 cut(s) 93, 440
BstENI CCTNNNNNAGG 1 cut(s) 52
BstKTI GATC 1 cut(s) 47
BstMBI GATC 1 cut(s) 44
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BtsIMutI CAGTG 1 cut(s) 448
Cac8I GCNNGC 3 cut(s) 90, 186, 219
CviJI RGCY 9 cut(s) 100, 135, 221, 251, 299, 350, 435, 455, 465
CviKI_1 RGCY 9 cut(s) 100, 135, 221, 251, 299, 350, 435, 455, 465
DdeI CTNAG 2 cut(s) 93, 440
DpnI GATC 1 cut(s) 46
DpnII GATC 1 cut(s) 44
Eam1104I CTCTTC 2 cut(s) 135, 441
EarI CTCTTC 2 cut(s) 135, 441
Eco32I GATATC 1 cut(s) 60
Eco88I CYCGRG 1 cut(s) 117
EcoNI CCTNNNNNAGG 1 cut(s) 52
EcoRV GATATC 1 cut(s) 60
FaiI YATR 9 cut(s) 26, 138, 162, 197, 199, 201, 290, 432, 473
FaqI GGGAC 1 cut(s) 61
FblI GTMKAC 1 cut(s) 384
FspBI CTAG 3 cut(s) 21, 270, 404
HapII CCGG 1 cut(s) 320
HinfI GANTC 3 cut(s) 74, 302, 341
HpaII CCGG 1 cut(s) 320
Hpy166II GTNNAC 1 cut(s) 385
Hpy188III TCNNGA 4 cut(s) 109, 119, 254, 419
Hpy8I GTNNAC 1 cut(s) 385
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 5 cut(s) 6, 34, 164, 217, 288
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 2 cut(s) 93, 440
Kzo9I GATC 1 cut(s) 44
LmnI GCTCC 1 cut(s) 355
LpnPI CCDG 7 cut(s) 27, 61, 70, 122, 203, 333, 447
LweI GCATC 1 cut(s) 165
MaeI CTAG 3 cut(s) 21, 270, 404
MalI GATC 1 cut(s) 46
MboI GATC 1 cut(s) 44
MboII GAAGA 4 cut(s) 54, 97, 152, 458
MflI RGATCY 1 cut(s) 44
MlyI GAGTC 1 cut(s) 83
MnlI CCTC 3 cut(s) 90, 136, 449
MseI TTAA 1 cut(s) 281
MspI CCGG 1 cut(s) 320
Mva1269I GAATGC 1 cut(s) 118
MwoI GCNNNNNNNGC 1 cut(s) 218
NdeII GATC 1 cut(s) 44
NlaIV GGNNCC 2 cut(s) 46, 351
PaeR7I CTCGAG 1 cut(s) 117
PctI GAATGC 1 cut(s) 118
PfeI GAWTC 2 cut(s) 302, 341
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PspN4I GGNNCC 2 cut(s) 46, 351
PsuI RGATCY 1 cut(s) 44
SaqAI TTAA 1 cut(s) 281
Sau3AI GATC 1 cut(s) 44
SchI GAGTC 1 cut(s) 83
SetI ASST 8 cut(s) 22, 147, 253, 301, 338, 437, 457, 487
SfaNI GCATC 1 cut(s) 165
Sfr274I CTCGAG 1 cut(s) 117
SlaI CTCGAG 1 cut(s) 117
SmlI CTYRAG 2 cut(s) 117, 419
SmoI CTYRAG 2 cut(s) 117, 419
SsiI CCGC 1 cut(s) 71
SspMI CTAG 3 cut(s) 21, 270, 404
TaaI ACNGT 1 cut(s) 241
TaqI TCGA 1 cut(s) 118
TfiI GAWTC 2 cut(s) 302, 341
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TscAI CASTG 1 cut(s) 448
TspDTI ATGAA 2 cut(s) 153, 261
TspRI CASTG 1 cut(s) 448
XagI CCTNNNNNAGG 1 cut(s) 52
XhoI CTCGAG 1 cut(s) 117
XmiI GTMKAC 1 cut(s) 384
XspI CTAG 3 cut(s) 21, 270, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.