Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0017835

Physical Location & Seq

Genomic Coordinates Reverse (-)

31312544 .. 31319315

Gene Structure 6772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG156500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGATTTTGCTGTACATCGGATGCGTTACCTCTGTTCCCAAGCATTCTATTGATGTTGTCCCAATACAGATAGTGTGTCACAAGACCAGTGATGATAAGGACTTTAATGATGACAAGGTTTTCAGATGTTTATGGAGAAATGCTCAGCAAGTAATTGAATCTACAAAGTCCTGTCCGCCCAGTGCAATAAAATATCAGAATAACTTTTGTGTTTTCATACGTGAGGTTTTGAGAAACAGTTCTCACCTCTTGACAGATGATGAAAAGGATTTCATCGAGTCGTTTACTTCGATGTCAGATGATAGTCAGAGGCTATTTGTTCAGCTTTATACACGGAAAGGCCCATGGTTTCGGCTGTCTGCTATTTCATACCCAGAATTACTGGATCTGCAACAAGCAAGGAAAGAGCTGTCTGCTAATAGAATACTATCAGTTGGATATGCTAGGCTTTTCTTCCTAAATGGTGAACAGGAACTCTCAGCATTTCTACTGGTGTATTTGGGAATAATCAAGTATCCAACTTACAAGTGCATAGCTTCAGAACAAATTTTCTCAGCTCGAGATGACTTGCTTGGCTATGAAGAGGCTATTGAAGTGGCACAAATAGTTGATGAAGCTCTTGATGGAAGCAACACTGGATTCGTCTTAAACTCTCTCTCCTCCTTTGTTCATCTCCATTTACTTCAAAAAACAACCAGCTCTCTCTCCATCCCTAGACTGTCTTGCCCACAACCTGATCTCACCTCTGGCGATGAGTTATTAGTCAATGGTGTCATTCCCCCTCTCCACCTCATCCCCGTCCCCGAGAACCCGCCTGACCCAAACCTGCGACCCAACTCGGAAGAGATTTCTCCTCCGGACCCAGAATCGGAAGCCCAGGTGTCAACTGCAGCTCCGGTGCTGACCGCATCGAAGTGGTGGAGGGACATGTTCAAGAAGAAGAGTGAGGGTAGTGAGAAAGAGAAGGAGAAGAAGATGGAGTGGAAGAAGGAGAACCGTTTTCGTGAAGCAGATCCGCCGGAAATGCTTGTACCCGACCCAAATTTGAACCTCCCCGGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

354

Amino Acids

40.16

Weight (kDa)

5.18

Isoelectric Point (pI)

42.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAN1_HTH	PF21315	65 - 141	5.9e-15	FAN1, HTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017835)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003654 RLG00000008421 RLG00000014808
rosa_multiflora	Rmu_sc0001969.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433330 Rroxscaffold_6G00407280 Rroxscaffold_7G00213750
rosa_rugosa	Rorug04G0114200
rosa_samantha	Rh1DG108800 Rh4CG173200 Rh4DG156500
rosa_wichuraiana	Rw4G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	834
AccIII	TCCGGA	1 cut(s)	856
AciI	CCGC	4 cut(s)	176, 812, 906, 1016
AclWI	GGATC	2 cut(s)	393, 1007
AcsI	RAATTY	2 cut(s)	546, 1042
AcuI	CTGAAG	1 cut(s)	522
AfaI	GTAC	2 cut(s)	14, 1032
AfiI	CCNNNNNNNGG	1 cut(s)	868
AflIII	ACRYGT	1 cut(s)	927
AgsI	TTSAA	5 cut(s)	158, 593, 686, 934, 1048
AjnI	CCWGG	1 cut(s)	876
AluBI	AGCT	7 cut(s)	325, 409, 536, 557, 617, 699, 893
AluI	AGCT	7 cut(s)	325, 409, 536, 557, 617, 699, 893
AlwI	GGATC	2 cut(s)	393, 1007
Ama87I	CYCGRG	2 cut(s)	558, 803
Aor13HI	TCCGGA	1 cut(s)	856
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	1 cut(s)	890
ApoI	RAATTY	2 cut(s)	546, 1042
Asp700I	GAANNNNTTC	1 cut(s)	238
AspS9I	GGNCC	2 cut(s)	341, 859
AsuC2I	CCSGG	1 cut(s)	1056
AsuHPI	GGTGA	3 cut(s)	236, 476, 733
AvaI	CYCGRG	2 cut(s)	558, 803
AvaII	GGWCC	1 cut(s)	859
BbvI	GCAGC	1 cut(s)	902
BccI	CCATC	3 cut(s)	617, 716, 970
BciT130I	CCWGG	1 cut(s)	878
BciVI	GTATCC	1 cut(s)	525
BcnI	CCSGG	1 cut(s)	1056
BfaI	CTAG	2 cut(s)	444, 714
BfmI	CTRYAG	1 cut(s)	888
BfuAI	ACCTGC	1 cut(s)	834
BfuI	GTATCC	1 cut(s)	525
BisI	GCNGC	1 cut(s)	891
BlpI	GCTNAGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	892
Bme1390I	CCNGG	2 cut(s)	878, 1056
Bme18I	GGWCC	1 cut(s)	859
BmeT110I	CYCGRG	2 cut(s)	558, 803
BmgT120I	GGNCC	2 cut(s)	341, 859
BmiI	GGNNCC	1 cut(s)	861
BmrFI	CCNGG	2 cut(s)	878, 1056
BmrI	ACTGGG	1 cut(s)	174
BmsI	GCATC	2 cut(s)	11, 917
BmuI	ACTGGG	1 cut(s)	174
BplI	GAGNNNNNCTC	2 cut(s)	127, 159
Bpu1102I	GCTNAGC	1 cut(s)	144
BpuMI	CCSGG	1 cut(s)	1056
BsaAI	YACGTR	1 cut(s)	221
BsaJI	CCNNGG	3 cut(s)	344, 876, 1054
BsaWI	WCCGGW	2 cut(s)	856, 895
BsaXI	ACNNNNNCTCC	4 cut(s)	641, 671, 877, 907
Bsc4I	CCNNNNNNNGG	1 cut(s)	868
Bse1I	ACTGG	5 cut(s)	87, 180, 387, 495, 640
BseAI	TCCGGA	1 cut(s)	856
BseBI	CCWGG	1 cut(s)	878
BseDI	CCNNGG	3 cut(s)	344, 876, 1054
BseGI	GGATG	3 cut(s)	26, 708, 792
BseLI	CCNNNNNNNGG	1 cut(s)	868
BseMII	CTCAG	3 cut(s)	158, 492, 567
BseNI	ACTGG	5 cut(s)	87, 180, 387, 495, 640
BseRI	GAGGAG	2 cut(s)	649, 843
BseXI	GCAGC	1 cut(s)	902
BshFI	GGCC	1 cut(s)	342
BsiHKCI	CYCGRG	2 cut(s)	558, 803
BsiSI	CCGG	4 cut(s)	857, 896, 1019, 1056
BslFI	GGGAC	3 cut(s)	44, 785, 938
BslI	CCNNNNNNNGG	1 cut(s)	868
BsmFI	GGGAC	3 cut(s)	44, 785, 938
BsmI	GAATGC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	342
BsoBI	CYCGRG	2 cut(s)	558, 803
Bsp13I	TCCGGA	1 cut(s)	856
Bsp1407I	TGTACA	1 cut(s)	12
Bsp143I	GATC	3 cut(s)	385, 736, 1012
Bsp1720I	GCTNAGC	1 cut(s)	144
Bsp19I	CCATGG	1 cut(s)	344
BspACI	CCGC	4 cut(s)	176, 812, 906, 1016
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	3 cut(s)	157, 491, 566
BspEI	TCCGGA	1 cut(s)	856
BspLI	GGNNCC	1 cut(s)	861
BspMAI	CTGCAG	1 cut(s)	892
BspMI	ACCTGC	1 cut(s)	834
BspPI	GGATC	2 cut(s)	393, 1007
BsrGI	TGTACA	1 cut(s)	12
BsrI	ACTGG	5 cut(s)	87, 180, 387, 495, 640
BssECI	CCNNGG	3 cut(s)	344, 876, 1054
BssMI	GATC	3 cut(s)	385, 736, 1012
BssT1I	CCWWGG	1 cut(s)	344
Bst2UI	CCWGG	1 cut(s)	878
Bst4CI	ACNGT	3 cut(s)	239, 720, 998
Bst6I	CTCTTC	3 cut(s)	576, 837, 935
BstAUI	TGTACA	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	221
BstDEI	CTNAG	3 cut(s)	144, 478, 553
BstDSI	CCRYGG	1 cut(s)	344
BstF5I	GGATG	3 cut(s)	26, 708, 792
BstKTI	GATC	3 cut(s)	388, 739, 1015
BstMBI	GATC	3 cut(s)	385, 736, 1012
BstMWI	GCNNNNNNNGC	1 cut(s)	1024
BstNI	CCWGG	1 cut(s)	878
BstNSI	RCATGY	1 cut(s)	931
BstSCI	CCNGG	2 cut(s)	876, 1054
BstSFI	CTRYAG	1 cut(s)	888
BstV1I	GCAGC	1 cut(s)	902
BstX2I	RGATCY	2 cut(s)	385, 1012
BstYI	RGATCY	2 cut(s)	385, 1012
BsuI	GTATCC	1 cut(s)	525
BsuRI	GGCC	1 cut(s)	342
BtgI	CCRYGG	1 cut(s)	344
BtgZI	GCGATG	1 cut(s)	765
BtsCI	GGATG	3 cut(s)	26, 708, 792
BtsIMutI	CAGTG	3 cut(s)	94, 187, 633
BveI	ACCTGC	1 cut(s)	834
Cfr13I	GGNCC	2 cut(s)	341, 859
Csp6I	GTAC	2 cut(s)	13, 1031
CviAII	CATG	2 cut(s)	345, 928
CviQI	GTAC	2 cut(s)	13, 1031
DdeI	CTNAG	3 cut(s)	144, 478, 553
DpnI	GATC	3 cut(s)	387, 738, 1014
DpnII	GATC	3 cut(s)	385, 736, 1012
Eam1104I	CTCTTC	3 cut(s)	576, 837, 935
EarI	CTCTTC	3 cut(s)	576, 837, 935
EciI	GGCGGA	2 cut(s)	165, 1005
Eco130I	CCWWGG	1 cut(s)	344
Eco47I	GGWCC	1 cut(s)	859
Eco57I	CTGAAG	1 cut(s)	522
Eco88I	CYCGRG	2 cut(s)	558, 803
EcoRII	CCWGG	1 cut(s)	876
EcoT14I	CCWWGG	1 cut(s)	344
ErhI	CCWWGG	1 cut(s)	344
FaeI	CATG	2 cut(s)	348, 931
FaiI	YATR	9 cut(s)	133, 218, 330, 346, 370, 441, 533, 579, 929
FaqI	GGGAC	3 cut(s)	44, 785, 938
FatI	CATG	2 cut(s)	344, 927
FauI	CCCGC	1 cut(s)	819
Fnu4HI	GCNGC	1 cut(s)	891
FokI	GGATG	3 cut(s)	33, 695, 779
Fsp4HI	GCNGC	1 cut(s)	891
FspBI	CTAG	2 cut(s)	444, 714
GluI	GCNGC	1 cut(s)	891
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	4 cut(s)	857, 896, 1019, 1056
Hin1II	CATG	2 cut(s)	348, 931
HincII	GTYRAC	1 cut(s)	885
HindII	GTYRAC	1 cut(s)	885
HinfI	GANTC	4 cut(s)	158, 278, 639, 866
HpaII	CCGG	4 cut(s)	857, 896, 1019, 1056
HphI	GGTGA	3 cut(s)	236, 476, 733
Hpy166II	GTNNAC	3 cut(s)	285, 467, 885
Hpy188I	TCNGA	8 cut(s)	20, 125, 198, 298, 309, 541, 841, 871
Hpy188III	TCNNGA	6 cut(s)	250, 560, 620, 857, 934, 1004
Hpy8I	GTNNAC	3 cut(s)	285, 467, 885
HpyAV	CCTTC	3 cut(s)	958, 982, 1053
HpyCH4III	ACNGT	3 cut(s)	239, 720, 998
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	4 cut(s)	185, 391, 531, 890
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1024
HpyF3I	CTNAG	3 cut(s)	144, 478, 553
HpySE526I	ACGT	1 cut(s)	220
Hsp92II	CATG	2 cut(s)	348, 931
Kpn2I	TCCGGA	1 cut(s)	856
Kzo9I	GATC	3 cut(s)	385, 736, 1012
LmnI	GCTCC	1 cut(s)	898
Lsp1109I	GCAGC	1 cut(s)	902
LweI	GCATC	2 cut(s)	11, 917
MaeI	CTAG	2 cut(s)	444, 714
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	2 cut(s)	25, 77
MalI	GATC	3 cut(s)	387, 738, 1014
MboI	GATC	3 cut(s)	385, 736, 1012
MboII	GAAGA	8 cut(s)	445, 593, 854, 949, 952, 982, 985, 997
MflI	RGATCY	2 cut(s)	385, 1012
MluCI	AATT	4 cut(s)	153, 377, 546, 1042
MlyI	GAGTC	1 cut(s)	287
MmeI	TCCRAC	2 cut(s)	415, 542
MroI	TCCGGA	1 cut(s)	856
MroXI	GAANNNNTTC	1 cut(s)	238
MseI	TTAA	2 cut(s)	105, 647
MslI	CAYNNNNRTG	1 cut(s)	913
MspI	CCGG	4 cut(s)	857, 896, 1019, 1056
MspR9I	CCNGG	2 cut(s)	878, 1056
Mva1269I	GAATGC	1 cut(s)	43
MvaI	CCWGG	1 cut(s)	878
MwoI	GCNNNNNNNGC	1 cut(s)	1024
NciI	CCSGG	1 cut(s)	1056
NcoI	CCATGG	1 cut(s)	344
NdeII	GATC	3 cut(s)	385, 736, 1012
NlaIII	CATG	2 cut(s)	348, 931
NlaIV	GGNNCC	1 cut(s)	861
NmuCI	GTSAC	1 cut(s)	77
NspI	RCATGY	1 cut(s)	931
PaeR7I	CTCGAG	1 cut(s)	558
PciI	ACATGT	1 cut(s)	927
PcsI	WCGNNNNNNNCGW	1 cut(s)	287
PctI	GAATGC	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	238
PfeI	GAWTC	3 cut(s)	158, 639, 866
PkrI	GCNGC	1 cut(s)	892
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
Ppu21I	YACGTR	1 cut(s)	221
PscI	ACATGT	1 cut(s)	927
Psp6I	CCWGG	1 cut(s)	876
PspGI	CCWGG	1 cut(s)	876
PspN4I	GGNNCC	1 cut(s)	861
PspPI	GGNCC	2 cut(s)	341, 859
PstI	CTGCAG	1 cut(s)	892
PsuI	RGATCY	2 cut(s)	385, 1012
RsaI	GTAC	2 cut(s)	14, 1032
RsaNI	GTAC	2 cut(s)	13, 1031
RseI	CAYNNNNRTG	1 cut(s)	913
SaqAI	TTAA	2 cut(s)	105, 647
SatI	GCNGC	1 cut(s)	891
Sau3AI	GATC	3 cut(s)	385, 736, 1012
Sau96I	GGNCC	2 cut(s)	341, 859
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	2 cut(s)	878, 1056
SfaNI	GCATC	2 cut(s)	11, 917
SfcI	CTRYAG	1 cut(s)	888
Sfr274I	CTCGAG	1 cut(s)	558
SinI	GGWCC	1 cut(s)	859
SlaI	CTCGAG	1 cut(s)	558
SmiMI	CAYNNNNRTG	1 cut(s)	913
SmlI	CTYRAG	1 cut(s)	558
SmoI	CTYRAG	1 cut(s)	558
Sse9I	AATT	4 cut(s)	153, 377, 546, 1042
SsiI	CCGC	4 cut(s)	176, 812, 906, 1016
SspMI	CTAG	2 cut(s)	444, 714
StyD4I	CCNGG	2 cut(s)	876, 1054
StyI	CCWWGG	1 cut(s)	344
TaaI	ACNGT	3 cut(s)	239, 720, 998
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	4 cut(s)	276, 290, 559, 911
TasI	AATT	4 cut(s)	153, 377, 546, 1042
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	3 cut(s)	158, 639, 866
Tru1I	TTAA	2 cut(s)	105, 647
Tru9I	TTAA	2 cut(s)	105, 647
TscAI	CASTG	3 cut(s)	94, 187, 640
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	1 cut(s)	890
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	7 cut(s)	205, 262, 276, 357, 594, 627, 659
TspGWI	ACGGA	1 cut(s)	349
TspRI	CASTG	3 cut(s)	94, 187, 640
VpaK11BI	GGWCC	1 cut(s)	859
XapI	RAATTY	2 cut(s)	546, 1042
XceI	RCATGY	1 cut(s)	931
XhoI	CTCGAG	1 cut(s)	558
XmnI	GAANNNNTTC	1 cut(s)	238
XspI	CTAG	2 cut(s)	444, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.