Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0017835

Physical Location & Seq

Genomic Coordinates Forward (+)

19971898 .. 19972553

Gene Structure 656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG108800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGTTTTGCACAGAACAGGATCCTGTGTTAGGATATCTTCAAATGCGGAGTCCCTTATCTGGCGTGCTGAGAGGCTTTTCTTCCTGAATGGTGAACAGGATCTCTTAGCATTTCTACTTGTGGATTTGGGAATAGTCAAGTATCCAACTTACAAGTGCATAGTCTCACAACAAATTTTCTCAGCTCGAGATGATTTGCTTGGCTATGAAGAGGCTATTGAAGTGGCACAAATAGTTGATGAAGCTCTTGATGGAAGCAACACTGGATTGGTCTTAAAGTGCATAAAGATAGCTGATTCCCATTTATCCAATCCGGTTCAATCCTTGACCTCTGAATCAATGGCTCCATTCCTTTCCCACTTTTCAGCAACATTTGTCTACTCAAAAGTGGTTTTACTCGGAATTTCTTTTCTTGAGCGTGAGCATAGGTATGCATCTTGGAATTTCATACCATTGGTCATATCGATGCTTCTGCTACAAATTATATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

163

Amino Acids

18.35

Weight (kDa)

5.28

Isoelectric Point (pI)

25.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017835)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003654 RLG00000008421 RLG00000014808
rosa_multiflora	Rmu_sc0001969.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433330 Rroxscaffold_6G00407280 Rroxscaffold_7G00213750
rosa_rugosa	Rorug04G0114200
rosa_samantha	Rh1DG108800 Rh4CG173200 Rh4DG156500
rosa_wichuraiana	Rw4G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	378
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	3 cut(s)	15, 28, 108
AcsI	RAATTY	3 cut(s)	174, 402, 442
AfiI	CCNNNNNNNGG	2 cut(s)	30, 60
AgsI	TTSAA	3 cut(s)	42, 221, 320
AluBI	AGCT	3 cut(s)	185, 245, 293
AluI	AGCT	3 cut(s)	185, 245, 293
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	3 cut(s)	15, 28, 108
Ama87I	CYCGRG	1 cut(s)	186
ApoI	RAATTY	3 cut(s)	174, 402, 442
ArsI	GACNNNNNNTTYG	2 cut(s)	35, 67
AsuHPI	GGTGA	1 cut(s)	104
AvaI	CYCGRG	1 cut(s)	186
BamHI	GGATCC	1 cut(s)	20
BccI	CCATC	1 cut(s)	245
BcgI	CGANNNNNNTGC	2 cut(s)	454, 488
BciVI	GTATCC	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	169
BfuI	GTATCC	1 cut(s)	153
BmeT110I	CYCGRG	1 cut(s)	186
BmiI	GGNNCC	2 cut(s)	22, 345
BmsI	GCATC	2 cut(s)	443, 456
BpuEI	CTTGAG	1 cut(s)	434
Bsa29I	ATCGAT	1 cut(s)	464
BsaWI	WCCGGW	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 60
Bse1I	ACTGG	1 cut(s)	268
BseCI	ATCGAT	1 cut(s)	464
BseLI	CCNNNNNNNGG	2 cut(s)	30, 60
BseMII	CTCAG	2 cut(s)	60, 195
BseNI	ACTGG	1 cut(s)	268
BshVI	ATCGAT	1 cut(s)	464
BsiHKCI	CYCGRG	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	2 cut(s)	30, 60
BsmAI	GTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	37
BsoBI	CYCGRG	1 cut(s)	186
Bsp143I	GATC	2 cut(s)	20, 100
BspACI	CCGC	1 cut(s)	47
BspCNI	CTCAG	2 cut(s)	61, 194
BspDI	ATCGAT	1 cut(s)	464
BspLI	GGNNCC	2 cut(s)	22, 345
BspPI	GGATC	3 cut(s)	15, 28, 108
BsrI	ACTGG	1 cut(s)	268
BssMI	GATC	2 cut(s)	20, 100
Bst6I	CTCTTC	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	3 cut(s)	69, 106, 181
BstENI	CCTNNNNNAGG	1 cut(s)	28
BstKTI	GATC	2 cut(s)	23, 103
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	2 cut(s)	20, 100
BstX2I	RGATCY	2 cut(s)	20, 100
BstYI	RGATCY	2 cut(s)	20, 100
Bsu15I	ATCGAT	1 cut(s)	464
BsuI	GTATCC	1 cut(s)	153
BsuTUI	ATCGAT	1 cut(s)	464
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	1 cut(s)	66
ClaI	ATCGAT	1 cut(s)	464
CviJI	RGCY	7 cut(s)	76, 185, 204, 215, 245, 293, 344
CviKI_1	RGCY	7 cut(s)	76, 185, 204, 215, 245, 293, 344
DdeI	CTNAG	3 cut(s)	69, 106, 181
DpnI	GATC	2 cut(s)	22, 102
DpnII	GATC	2 cut(s)	20, 100
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco32I	GATATC	1 cut(s)	36
Eco88I	CYCGRG	1 cut(s)	186
EcoNI	CCTNNNNNAGG	1 cut(s)	28
EcoRV	GATATC	1 cut(s)	36
EcoT22I	ATGCAT	1 cut(s)	436
FaiI	YATR	9 cut(s)	161, 207, 284, 426, 432, 449, 461, 485, 487
FaqI	GGGAC	1 cut(s)	37
FblI	GTMKAC	1 cut(s)	378
HapII	CCGG	1 cut(s)	314
HinfI	GANTC	3 cut(s)	50, 296, 335
HpaII	CCGG	1 cut(s)	314
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	2 cut(s)	95, 379
Hpy188I	TCNGA	2 cut(s)	334, 401
Hpy188III	TCNNGA	4 cut(s)	85, 188, 248, 413
Hpy8I	GTNNAC	2 cut(s)	95, 379
HpyCH4V	TGCA	4 cut(s)	10, 159, 282, 434
HpyF3I	CTNAG	3 cut(s)	69, 106, 181
Kzo9I	GATC	2 cut(s)	20, 100
LmnI	GCTCC	1 cut(s)	349
LpnPI	CCDG	7 cut(s)	3, 37, 46, 83, 98, 249, 327
LweI	GCATC	2 cut(s)	443, 456
MalI	GATC	2 cut(s)	22, 102
MboI	GATC	2 cut(s)	20, 100
MboII	GAAGA	3 cut(s)	30, 73, 221
MflI	RGATCY	2 cut(s)	20, 100
MluCI	AATT	4 cut(s)	174, 402, 442, 480
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	3 cut(s)	66, 205, 340
Mph1103I	ATGCAT	1 cut(s)	436
MseI	TTAA	1 cut(s)	275
MslI	CAYNNNNRTG	2 cut(s)	429, 464
MspI	CCGG	1 cut(s)	314
NdeII	GATC	2 cut(s)	20, 100
NlaIV	GGNNCC	2 cut(s)	22, 345
NsiI	ATGCAT	1 cut(s)	436
PaeR7I	CTCGAG	1 cut(s)	186
PfeI	GAWTC	2 cut(s)	296, 335
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PspN4I	GGNNCC	2 cut(s)	22, 345
PsuI	RGATCY	2 cut(s)	20, 100
RseI	CAYNNNNRTG	2 cut(s)	429, 464
SaqAI	TTAA	1 cut(s)	275
Sau3AI	GATC	2 cut(s)	20, 100
SchI	GAGTC	1 cut(s)	59
SetI	ASST	5 cut(s)	187, 247, 295, 332, 431
SfaNI	GCATC	2 cut(s)	443, 456
Sfr274I	CTCGAG	1 cut(s)	186
SlaI	CTCGAG	1 cut(s)	186
SmiMI	CAYNNNNRTG	2 cut(s)	429, 464
SmlI	CTYRAG	2 cut(s)	186, 413
SmoI	CTYRAG	2 cut(s)	186, 413
Sse9I	AATT	4 cut(s)	174, 402, 442, 480
SsiI	CCGC	1 cut(s)	47
TaqI	TCGA	2 cut(s)	187, 464
TasI	AATT	4 cut(s)	174, 402, 442, 480
TfiI	GAWTC	2 cut(s)	296, 335
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TscAI	CASTG	1 cut(s)	268
TspDTI	ATGAA	3 cut(s)	222, 255, 436
TspRI	CASTG	1 cut(s)	268
XagI	CCTNNNNNAGG	1 cut(s)	28
XapI	RAATTY	3 cut(s)	174, 402, 442
XhoI	CTCGAG	1 cut(s)	186
XmiI	GTMKAC	1 cut(s)	378
Zsp2I	ATGCAT	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.