Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0017835

Physical Location & Seq

Genomic Coordinates Reverse (-)

31403579 .. 31404895

Gene Structure 1317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G013440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGATAGTTTTACATTGTCATTTCCTGCTTTGGATAATATTTTCCATTCTCATTTCCTTGTGGGTTTCCTTTCAGGGATGCATTACCTCTGTTCCCAAGCATTCTATTGATGTTGTCCCAATACAGATAGTGTGTCACAAGACCAGTGATGATAAGGACTTTAATGATGACAAGGTTTTCAGATGTTTATGGAGAAATGCTCAGCAAGTAATTGAATCTACAAAGTCCTGTCCGCCCAGTGCAATAAAATATCAGAATAACTTTTGTGTTTTCATACGTGAGGTTTTGAGAAACAGTTCTCACCTCTTGACAGATGATGAAAAGGATTTCATCGAGTCGTTTACTTCGATGTCAGATGATAGTCAGAGGCTATTTGTTCAGCTTTATACACGGAAAGGCCCATGGTTTCGGCTGTCTGCTATTTCATACCCAGAATTACTGGATCTGCAACAAGCAATGAAAGAGCTGTCTGCTAATAGAATACTATCAGTTGGATATGCTGTATGTTTTAAAATTCAGATTAAGGCTGATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

178

Amino Acids

20.58

Weight (kDa)

6.94

Isoelectric Point (pI)

40.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAN1_HTH	PF21315	84 - 160	3.3e-16	FAN1, HTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0017835)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003654 RLG00000008421 RLG00000014808
rosa_multiflora	Rmu_sc0001969.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433330 Rroxscaffold_6G00407280 Rroxscaffold_7G00213750
rosa_rugosa	Rorug04G0114200
rosa_samantha	Rh1DG108800 Rh4CG173200 Rh4DG156500
rosa_wichuraiana	Rw4G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	1 cut(s)	450
AcsI	RAATTY	1 cut(s)	513
AgsI	TTSAA	1 cut(s)	215
AluBI	AGCT	2 cut(s)	382, 466
AluI	AGCT	2 cut(s)	382, 466
AlwI	GGATC	1 cut(s)	450
AoxI	GGCC	1 cut(s)	397
ApoI	RAATTY	1 cut(s)	513
Asp700I	GAANNNNTTC	1 cut(s)	295
AspS9I	GGNCC	1 cut(s)	398
AsuHPI	GGTGA	1 cut(s)	293
BccI	CCATC	1 cut(s)	524
BlpI	GCTNAGC	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	398
BmrI	ACTGGG	1 cut(s)	231
BmsI	GCATC	1 cut(s)	68
BmuI	ACTGGG	1 cut(s)	231
BplI	GAGNNNNNCTC	2 cut(s)	184, 216
Bpu1102I	GCTNAGC	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	401
Bse1I	ACTGG	3 cut(s)	144, 237, 444
Bse3DI	GCAATG	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	401
BseGI	GGATG	1 cut(s)	83
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	1 cut(s)	215
BseNI	ACTGG	3 cut(s)	144, 237, 444
BshFI	GGCC	1 cut(s)	399
BslFI	GGGAC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	101
BsmI	GAATGC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	399
Bsp143I	GATC	1 cut(s)	442
Bsp1720I	GCTNAGC	1 cut(s)	201
Bsp19I	CCATGG	1 cut(s)	401
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	1 cut(s)	399
BspCNI	CTCAG	1 cut(s)	214
BspPI	GGATC	1 cut(s)	450
BsrDI	GCAATG	1 cut(s)	462
BsrI	ACTGG	3 cut(s)	144, 237, 444
BssECI	CCNNGG	1 cut(s)	401
BssMI	GATC	1 cut(s)	442
BssT1I	CCWWGG	1 cut(s)	401
Bst4CI	ACNGT	1 cut(s)	296
BstBAI	YACGTR	1 cut(s)	278
BstDEI	CTNAG	1 cut(s)	201
BstDSI	CCRYGG	1 cut(s)	401
BstF5I	GGATG	1 cut(s)	83
BstKTI	GATC	1 cut(s)	445
BstMBI	GATC	1 cut(s)	442
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
BsuRI	GGCC	1 cut(s)	399
BtgI	CCRYGG	1 cut(s)	401
BtsCI	GGATG	1 cut(s)	83
BtsIMutI	CAGTG	2 cut(s)	151, 244
Cfr13I	GGNCC	1 cut(s)	398
CviAII	CATG	1 cut(s)	402
CviJI	RGCY	7 cut(s)	370, 382, 399, 412, 466, 527, 534
CviKI_1	RGCY	7 cut(s)	370, 382, 399, 412, 466, 527, 534
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	1 cut(s)	444
DpnII	GATC	1 cut(s)	442
DraI	TTTAAA	1 cut(s)	511
EciI	GGCGGA	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	401
EcoT14I	CCWWGG	1 cut(s)	401
EcoT22I	ATGCAT	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	401
FaeI	CATG	1 cut(s)	405
FaiI	YATR	7 cut(s)	190, 275, 387, 403, 427, 498, 505
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	1 cut(s)	401
FokI	GGATG	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	399
Hin1II	CATG	1 cut(s)	405
HinfI	GANTC	2 cut(s)	215, 335
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	342
Hpy188I	TCNGA	5 cut(s)	182, 255, 355, 366, 519
Hpy188III	TCNNGA	1 cut(s)	307
Hpy8I	GTNNAC	1 cut(s)	342
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	3 cut(s)	81, 242, 448
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	1 cut(s)	277
Hsp92II	CATG	1 cut(s)	405
Kzo9I	GATC	1 cut(s)	442
LpnPI	CCDG	7 cut(s)	38, 59, 157, 241, 250, 425, 444
LweI	GCATC	1 cut(s)	68
MaeII	ACGT	1 cut(s)	277
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	1 cut(s)	444
MboI	GATC	1 cut(s)	442
MflI	RGATCY	1 cut(s)	442
MluCI	AATT	3 cut(s)	210, 434, 513
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	1 cut(s)	472
MnlI	CCTC	4 cut(s)	97, 274, 314, 360
Mph1103I	ATGCAT	1 cut(s)	83
MroXI	GAANNNNTTC	1 cut(s)	295
MseI	TTAA	3 cut(s)	162, 510, 522
Mva1269I	GAATGC	1 cut(s)	100
NcoI	CCATGG	1 cut(s)	401
NdeII	GATC	1 cut(s)	442
NlaIII	CATG	1 cut(s)	405
NmuCI	GTSAC	1 cut(s)	134
NsiI	ATGCAT	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	344
PctI	GAATGC	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	295
PfeI	GAWTC	1 cut(s)	215
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
Ppu21I	YACGTR	1 cut(s)	278
PspPI	GGNCC	1 cut(s)	398
PsuI	RGATCY	1 cut(s)	442
SaqAI	TTAA	3 cut(s)	162, 510, 522
Sau3AI	GATC	1 cut(s)	442
Sau96I	GGNCC	1 cut(s)	398
SchI	GAGTC	1 cut(s)	344
SetI	ASST	7 cut(s)	89, 177, 280, 285, 306, 384, 468
SfaNI	GCATC	1 cut(s)	68
Sse9I	AATT	3 cut(s)	210, 434, 513
SsiI	CCGC	1 cut(s)	233
SspI	AATATT	1 cut(s)	39
StyI	CCWWGG	1 cut(s)	401
TaaI	ACNGT	1 cut(s)	296
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	2 cut(s)	333, 347
TasI	AATT	3 cut(s)	210, 434, 513
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	3 cut(s)	162, 510, 522
Tru9I	TTAA	3 cut(s)	162, 510, 522
TscAI	CASTG	2 cut(s)	151, 244
TseFI	GTSAC	1 cut(s)	134
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	5 cut(s)	262, 319, 333, 414, 473
TspGWI	ACGGA	1 cut(s)	406
TspRI	CASTG	2 cut(s)	151, 244
XapI	RAATTY	1 cut(s)	513
XmnI	GAANNNNTTC	1 cut(s)	295
Zsp2I	ATGCAT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.