Rh4CG173200

Fanconi-associated nuclease 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0017835
Physical Location & Seq
Reverse (-)
37909848 .. 37917847
8000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG173200.1

Sequence Viewer

Length: 1131 bp
ATGATTTTGCTGTACATCGTTGTTTATTCAGATTCAGGATGCCTTAAAGTGCTTGGTTTTCTCCCTCGCAAGCTAGCTGAGTATTTGTCTCCTCTGATAGATCAGTATCGTCTAAATTTTGAGGGATGCGTTACCTCTGTTCCCAAGCATTCTATTGATGTTGTCCCAATACAGATAGTGTGTCACAAGACCAGTGATGATAAGGACTTTAATGATGACAAGGTTTTCAGATGTTTATCTAGAAATGCTCAGCAAGTAATTGAATCTACAAAGTCCTGTCCGCTGAGTGCAATAAAATATCAGGATAACTTTTGTGTTTTCATACGTGAAGTTTTGAGAAACAGTTCTCACCTCTTGACAGATGATGAAAAGGATTTCATCGAGTTGTTTACTTCGATGTCAGATGATCGTCAGATGCTATTTGTTCGGCTTTATACACGGAAAGGGCCATGGTTTCGGCTGTCTGCTATTTCATACCCAGAATTACTGGATCCCCAACAAGCAGTAAAAGAGCTGTCTGGTAATAGAATACTATCAGTTGGATATGCTGCTATTGAAGTGGCGAAAATAGTTGATGAAGCTCTTGATGGAAGCAACACTGGATTGGTCTTAAAGTGCATAAAGATAGCTGATTCCCATTTATCCAATCCGGTTCAATCCTTGACCTCTGAATCAATGGCTCCATTCCTTTCCCACTTTTCAGCAACATTTGTCTACTCAAAAGTGGTTTTACTAGGAATTTCTTTTCTTGAGCGTGAGCGTAGCTCTCTCTCCATCCCTAGACCATCTTGCCCACAACCTGATCTCACCTCTGTCGATGAGTTATTAGTCAATGGTGTCATTCCCCCTCTCCACCTCATCCCCGTCCCCGAGAACCCGCCCAACCCAAACCTGCGACCCAACTCGGAAGAGATTTCTCCTCCGGACCCAGAATCGGAAGCTCAGGTGTCAACTGCAGCTCCGGTGCTGACCGCATCGAAGTGGTGGAGGGACATGTTCAAGAAGAAGAGTGAGGGTAGTGAGAAAGAGAAGGAGAAGAAGATGGAGTGGAAGAAGGAGAACCGTTTTCGTGGACCAGATCCGTCGGAAATGCTTGTACCCGACCCAAATTTGAACCTCCCCGAAAGGTGA

Protein Analysis

376

Amino Acids

42.43

Weight (kDa)

5.56

Isoelectric Point (pI)

40.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAN1_HTH PF21315 100 - 173 1.8e-15 FAN1, HTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 900
AccI GTMKAC 1 cut(s) 714
AccIII TCCGGA 1 cut(s) 922
AciI CCGC 3 cut(s) 281, 878, 972
AclWI GGATC 3 cut(s) 485, 498, 1073
AcsI RAATTY 3 cut(s) 115, 738, 1108
AfaI GTAC 2 cut(s) 14, 1098
AfiI CCNNNNNNNGG 1 cut(s) 934
AflIII ACRYGT 1 cut(s) 993
AgsI TTSAA 5 cut(s) 263, 557, 656, 1000, 1114
AluBI AGCT 8 cut(s) 73, 77, 514, 581, 629, 765, 941, 959
AluI AGCT 8 cut(s) 73, 77, 514, 581, 629, 765, 941, 959
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 3 cut(s) 485, 498, 1073
Ama87I CYCGRG 1 cut(s) 869
Aor13HI TCCGGA 1 cut(s) 922
AoxI GGCC 1 cut(s) 446
ApeKI GCWGC 2 cut(s) 548, 956
ApoI RAATTY 3 cut(s) 115, 738, 1108
Asp700I GAANNNNTTC 1 cut(s) 343
AspS9I GGNCC 3 cut(s) 446, 925, 1073
AsuHPI GGTGA 2 cut(s) 341, 799
AsuNHI GCTAGC 1 cut(s) 73
AvaI CYCGRG 1 cut(s) 869
AvaII GGWCC 2 cut(s) 925, 1073
BamHI GGATCC 1 cut(s) 490
BbvI GCAGC 2 cut(s) 535, 968
BccI CCATC 4 cut(s) 581, 782, 793, 1036
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 4 cut(s) 74, 240, 734, 780
BfmI CTRYAG 1 cut(s) 954
BfuAI ACCTGC 1 cut(s) 900
BisI GCNGC 2 cut(s) 549, 957
BlpI GCTNAGC 1 cut(s) 249
BlsI GCNGC 2 cut(s) 550, 958
Bme18I GGWCC 2 cut(s) 925, 1073
BmeT110I CYCGRG 1 cut(s) 869
BmgT120I GGNCC 3 cut(s) 446, 925, 1073
BmiI GGNNCC 3 cut(s) 492, 681, 927
BmsI GCATC 4 cut(s) 29, 116, 405, 983
BmtI GCTAGC 1 cut(s) 77
BplI GAGNNNNNCTC 2 cut(s) 749, 781
Bpu10I CCTNAGC 1 cut(s) 942
Bpu1102I GCTNAGC 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 770
BsaAI YACGTR 1 cut(s) 326
BsaBI GATNNNNATC 2 cut(s) 105, 235
BsaJI CCNNGG 1 cut(s) 449
BsaWI WCCGGW 3 cut(s) 649, 922, 961
BsaXI ACNNNNNCTCC 2 cut(s) 943, 973
Bsc4I CCNNNNNNNGG 1 cut(s) 934
Bse1I ACTGG 3 cut(s) 192, 492, 604
Bse8I GATNNNNATC 2 cut(s) 105, 235
BseAI TCCGGA 1 cut(s) 922
BseDI CCNNGG 1 cut(s) 449
BseGI GGATG 4 cut(s) 44, 131, 774, 858
BseJI GATNNNNATC 2 cut(s) 105, 235
BseLI CCNNNNNNNGG 1 cut(s) 934
BseMII CTCAG 4 cut(s) 69, 263, 275, 956
BseNI ACTGG 3 cut(s) 192, 492, 604
BseRI GAGGAG 2 cut(s) 81, 909
BseXI GCAGC 2 cut(s) 535, 968
BshFI GGCC 1 cut(s) 448
BsiHKCI CYCGRG 1 cut(s) 869
BsiSI CCGG 3 cut(s) 650, 923, 962
BslFI GGGAC 3 cut(s) 149, 851, 1004
BslI CCNNNNNNNGG 1 cut(s) 934
BsmAI GTCTC 1 cut(s) 93
BsmFI GGGAC 3 cut(s) 149, 851, 1004
BsmI GAATGC 1 cut(s) 148
BsnI GGCC 1 cut(s) 448
BsoBI CYCGRG 1 cut(s) 869
Bsp13I TCCGGA 1 cut(s) 922
Bsp1407I TGTACA 1 cut(s) 12
Bsp143I GATC 5 cut(s) 100, 406, 490, 802, 1078
Bsp1720I GCTNAGC 1 cut(s) 249
Bsp19I CCATGG 1 cut(s) 449
BspACI CCGC 3 cut(s) 281, 878, 972
BspANI GGCC 1 cut(s) 448
BspCNI CTCAG 4 cut(s) 70, 262, 276, 955
BspEI TCCGGA 1 cut(s) 922
BspLI GGNNCC 3 cut(s) 492, 681, 927
BspMAI CTGCAG 1 cut(s) 958
BspMI ACCTGC 1 cut(s) 900
BspOI GCTAGC 1 cut(s) 77
BspPI GGATC 3 cut(s) 485, 498, 1073
BsrGI TGTACA 1 cut(s) 12
BsrI ACTGG 3 cut(s) 192, 492, 604
BssECI CCNNGG 1 cut(s) 449
BssMI GATC 5 cut(s) 100, 406, 490, 802, 1078
BssT1I CCWWGG 1 cut(s) 449
Bst4CI ACNGT 2 cut(s) 344, 1064
Bst6I CTCTTC 2 cut(s) 903, 1001
BstAUI TGTACA 1 cut(s) 12
BstBAI YACGTR 1 cut(s) 326
BstC8I GCNNGC 2 cut(s) 71, 75
BstDEI CTNAG 4 cut(s) 78, 249, 284, 942
BstDSI CCRYGG 1 cut(s) 449
BstF5I GGATG 4 cut(s) 44, 131, 774, 858
BstKTI GATC 5 cut(s) 103, 409, 493, 805, 1081
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 5 cut(s) 100, 406, 490, 802, 1078
BstNSI RCATGY 1 cut(s) 997
BstSFI CTRYAG 1 cut(s) 954
BstV1I GCAGC 2 cut(s) 535, 968
BstX2I RGATCY 2 cut(s) 490, 1078
BstYI RGATCY 2 cut(s) 490, 1078
BsuRI GGCC 1 cut(s) 448
BtgI CCRYGG 1 cut(s) 449
BtsCI GGATG 4 cut(s) 44, 131, 774, 858
BtsIMutI CAGTG 2 cut(s) 199, 597
BveI ACCTGC 1 cut(s) 900
Cac8I GCNNGC 2 cut(s) 71, 75
Cfr13I GGNCC 3 cut(s) 446, 925, 1073
Csp6I GTAC 2 cut(s) 13, 1097
CviAII CATG 2 cut(s) 450, 994
CviQI GTAC 2 cut(s) 13, 1097
DdeI CTNAG 4 cut(s) 78, 249, 284, 942
DpnI GATC 5 cut(s) 102, 408, 492, 804, 1080
DpnII GATC 5 cut(s) 100, 406, 490, 802, 1078
Eam1104I CTCTTC 2 cut(s) 903, 1001
EarI CTCTTC 2 cut(s) 903, 1001
Eco130I CCWWGG 1 cut(s) 449
Eco47I GGWCC 2 cut(s) 925, 1073
Eco88I CYCGRG 1 cut(s) 869
EcoT14I CCWWGG 1 cut(s) 449
ErhI CCWWGG 1 cut(s) 449
FaeI CATG 2 cut(s) 453, 997
FaiI YATR 7 cut(s) 323, 435, 451, 475, 546, 620, 995
FaqI GGGAC 3 cut(s) 149, 851, 1004
FatI CATG 2 cut(s) 449, 993
FauI CCCGC 1 cut(s) 885
FblI GTMKAC 1 cut(s) 714
Fnu4HI GCNGC 2 cut(s) 549, 957
FokI GGATG 4 cut(s) 51, 138, 761, 845
Fsp4HI GCNGC 2 cut(s) 549, 957
FspBI CTAG 4 cut(s) 74, 240, 734, 780
GluI GCNGC 2 cut(s) 549, 957
HaeIII GGCC 1 cut(s) 448
HapII CCGG 3 cut(s) 650, 923, 962
Hin1II CATG 2 cut(s) 453, 997
HincII GTYRAC 1 cut(s) 951
HindII GTYRAC 1 cut(s) 951
HinfI GANTC 5 cut(s) 32, 263, 632, 671, 932
HpaII CCGG 3 cut(s) 650, 923, 962
HphI GGTGA 2 cut(s) 341, 799
Hpy166II GTNNAC 4 cut(s) 390, 715, 951, 1073
Hpy188I TCNGA 9 cut(s) 31, 96, 230, 403, 414, 670, 907, 937, 1087
Hpy188III TCNNGA 8 cut(s) 36, 240, 302, 355, 584, 749, 923, 1000
Hpy8I GTNNAC 4 cut(s) 390, 715, 951, 1073
Hpy99I CGWCG 1 cut(s) 1087
HpyAV CCTTC 2 cut(s) 1024, 1048
HpyCH4III ACNGT 2 cut(s) 344, 1064
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 3 cut(s) 290, 618, 956
HpyF3I CTNAG 4 cut(s) 78, 249, 284, 942
HpySE526I ACGT 1 cut(s) 325
Hsp92II CATG 2 cut(s) 453, 997
Kpn2I TCCGGA 1 cut(s) 922
Kzo9I GATC 5 cut(s) 100, 406, 490, 802, 1078
LmnI GCTCC 2 cut(s) 685, 964
Lsp1109I GCAGC 2 cut(s) 535, 968
LweI GCATC 4 cut(s) 29, 116, 405, 983
MaeI CTAG 4 cut(s) 74, 240, 734, 780
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 2 cut(s) 130, 182
MalI GATC 5 cut(s) 102, 408, 492, 804, 1080
MboI GATC 5 cut(s) 100, 406, 490, 802, 1078
MboII GAAGA 6 cut(s) 920, 1015, 1018, 1048, 1051, 1063
MflI RGATCY 2 cut(s) 490, 1078
MluCI AATT 5 cut(s) 115, 258, 482, 738, 1108
MmeI TCCRAC 2 cut(s) 520, 1065
MroI TCCGGA 1 cut(s) 922
MroXI GAANNNNTTC 1 cut(s) 343
MseI TTAA 3 cut(s) 45, 210, 611
MslI CAYNNNNRTG 1 cut(s) 979
MspA1I CMGCKG 1 cut(s) 283
MspI CCGG 3 cut(s) 650, 923, 962
Mva1269I GAATGC 1 cut(s) 148
NcoI CCATGG 1 cut(s) 449
NdeII GATC 5 cut(s) 100, 406, 490, 802, 1078
NheI GCTAGC 1 cut(s) 73
NlaIII CATG 2 cut(s) 453, 997
NlaIV GGNNCC 3 cut(s) 492, 681, 927
NmuCI GTSAC 1 cut(s) 182
NspI RCATGY 1 cut(s) 997
PciI ACATGT 1 cut(s) 993
PctI GAATGC 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 343
PfeI GAWTC 5 cut(s) 32, 263, 632, 671, 932
PkrI GCNGC 2 cut(s) 550, 958
Ppu21I YACGTR 1 cut(s) 326
PscI ACATGT 1 cut(s) 993
PspN4I GGNNCC 3 cut(s) 492, 681, 927
PspPI GGNCC 3 cut(s) 446, 925, 1073
PstI CTGCAG 1 cut(s) 958
PsuI RGATCY 2 cut(s) 490, 1078
RsaI GTAC 2 cut(s) 14, 1098
RsaNI GTAC 2 cut(s) 13, 1097
RseI CAYNNNNRTG 1 cut(s) 979
SaqAI TTAA 3 cut(s) 45, 210, 611
SatI GCNGC 2 cut(s) 549, 957
Sau3AI GATC 5 cut(s) 100, 406, 490, 802, 1078
Sau96I GGNCC 3 cut(s) 446, 925, 1073
SfaNI GCATC 4 cut(s) 29, 116, 405, 983
SfcI CTRYAG 1 cut(s) 954
SinI GGWCC 2 cut(s) 925, 1073
SmiMI CAYNNNNRTG 1 cut(s) 979
SmlI CTYRAG 1 cut(s) 749
SmoI CTYRAG 1 cut(s) 749
Sse9I AATT 5 cut(s) 115, 258, 482, 738, 1108
SsiI CCGC 3 cut(s) 281, 878, 972
SspMI CTAG 4 cut(s) 74, 240, 734, 780
StyI CCWWGG 1 cut(s) 449
TaaI ACNGT 2 cut(s) 344, 1064
TaiI ACGT 1 cut(s) 328
TaqI TCGA 4 cut(s) 381, 395, 816, 977
TasI AATT 5 cut(s) 115, 258, 482, 738, 1108
TatI WGTACW 1 cut(s) 12
TfiI GAWTC 5 cut(s) 32, 263, 632, 671, 932
Tru1I TTAA 3 cut(s) 45, 210, 611
Tru9I TTAA 3 cut(s) 45, 210, 611
TscAI CASTG 2 cut(s) 199, 604
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 2 cut(s) 548, 956
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 5 cut(s) 310, 367, 381, 462, 591
TspGWI ACGGA 2 cut(s) 454, 1071
TspRI CASTG 2 cut(s) 199, 604
VpaK11BI GGWCC 2 cut(s) 925, 1073
XapI RAATTY 3 cut(s) 115, 738, 1108
XbaI TCTAGA 1 cut(s) 239
XceI RCATGY 1 cut(s) 997
XmiI GTMKAC 1 cut(s) 714
XmnI GAANNNNTTC 1 cut(s) 343
XspI CTAG 4 cut(s) 74, 240, 734, 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.