Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0017835

Physical Location & Seq

Genomic Coordinates Forward (+)

30311052 .. 30313870

Gene Structure 2819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008421

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGACAAGTTTTCACCTCTTGACAGATGATGAAAAGGATTTCATCGAGTCGTTTACTTCGATGTCAGATGATAGTCAGAGGCTATTTGTTCGGCTTTATACACGGAAAGGCCCATGGTTTCGGCTGTCTGCTATTTCAGACCCAGAATTACTGGATCCCCAACCAGCAGTGAAAGAGCTGTCTGGGACAGGTCCATTGCTACGTAGTATGGTTTTGCATAGAACAGGATCCTGTGTTAGGATATCTTCAAATGCAGAGTCCCTTATCTGGCGTGCTGAGGATCTCTCAGCATTTCTACTGGTGGATTTGGGAATAATCAAGTATCCAACTTACAAGTGCATAGTTTCAGAACAAATTTCTCAGCTCGAGATGACTTCCTTGGCTATGAAGAGGTATCCTTTTTATCTTTATGCAAAAGTGTTGATGCCCACGCTTGCCTCTACTATATCTAAAGTGGCAAAAATAGTTGATGAAGCTCTTGATGGAAGCAACACTGGATTGGTCTTAAAGTGCACAAAGATAGCTGATTCCCATTTATCCAATCCGGTTCAGTCCTGGACCTCTGAATCAATGGCTCCATTCCTTTCCCACTTTTCAGCAACATTTGTCTACTCAAAAGTGGTTTTACTAGGAATTTCTTTTCATGAGCGTGAGCATAGGTATGCATCTTGGAATGTCATATCATTGGTCATAGCGATACTTCTGCTGCAAATTATATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

241

Amino Acids

27.05

Weight (kDa)

6.59

Isoelectric Point (pI)

36.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAN1_HTH	PF21315	5 - 63	7.1e-12	FAN1, HTH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017835)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003654 RLG00000008421 RLG00000014808
rosa_multiflora	Rmu_sc0001969.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433330 Rroxscaffold_6G00407280 Rroxscaffold_7G00213750
rosa_rugosa	Rorug04G0114200
rosa_samantha	Rh1DG108800 Rh4CG173200 Rh4DG156500
rosa_wichuraiana	Rw4G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	609
AclWI	GGATC	5 cut(s)	149, 162, 222, 235, 288
AcsI	RAATTY	2 cut(s)	354, 633
AfiI	CCNNNNNNNGG	2 cut(s)	237, 267
AgsI	TTSAA	1 cut(s)	249
AjnI	CCWGG	1 cut(s)	554
AluBI	AGCT	4 cut(s)	178, 364, 476, 524
AluI	AGCT	4 cut(s)	178, 364, 476, 524
Alw21I	GWGCWC	1 cut(s)	515
Alw44I	GTGCAC	1 cut(s)	511
AlwI	GGATC	5 cut(s)	149, 162, 222, 235, 288
Ama87I	CYCGRG	1 cut(s)	365
AoxI	GGCC	1 cut(s)	109
ApaLI	GTGCAC	1 cut(s)	511
ApeKI	GCWGC	1 cut(s)	706
ApoI	RAATTY	2 cut(s)	354, 633
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
AspS9I	GGNCC	3 cut(s)	110, 191, 558
AsuHPI	GGTGA	1 cut(s)	5
AvaI	CYCGRG	1 cut(s)	365
AvaII	GGWCC	2 cut(s)	191, 558
BaeGI	GKGCMC	1 cut(s)	515
BamHI	GGATCC	2 cut(s)	154, 227
Bbv12I	GWGCWC	1 cut(s)	515
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	693
BccI	CCATC	1 cut(s)	476
BcgI	CGANNNNNNTGC	2 cut(s)	685, 719
BciT130I	CCWGG	1 cut(s)	556
BciVI	GTATCC	2 cut(s)	333, 405
BfaI	CTAG	1 cut(s)	629
BfuI	GTATCC	2 cut(s)	333, 405
BisI	GCNGC	1 cut(s)	707
BlsI	GCNGC	1 cut(s)	708
Bme1390I	CCNGG	1 cut(s)	556
Bme18I	GGWCC	2 cut(s)	191, 558
BmeT110I	CYCGRG	1 cut(s)	365
BmgT120I	GGNCC	3 cut(s)	110, 191, 558
BmiI	GGNNCC	3 cut(s)	156, 229, 576
BmrFI	CCNGG	1 cut(s)	556
BmsI	GCATC	2 cut(s)	414, 674
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
Bpu10I	CCTNAGC	1 cut(s)	276
BsaAI	YACGTR	1 cut(s)	203
BsaJI	CCNNGG	2 cut(s)	113, 378
BsaWI	WCCGGW	1 cut(s)	544
Bsc4I	CCNNNNNNNGG	2 cut(s)	237, 267
Bse1I	ACTGG	3 cut(s)	156, 303, 499
Bse3DI	GCAATG	1 cut(s)	194
BseBI	CCWGG	1 cut(s)	556
BseDI	CCNNGG	2 cut(s)	113, 378
BseLI	CCNNNNNNNGG	2 cut(s)	237, 267
BseMI	GCAATG	1 cut(s)	194
BseMII	CTCAG	3 cut(s)	267, 300, 374
BseNI	ACTGG	3 cut(s)	156, 303, 499
BseSI	GKGCMC	1 cut(s)	515
BseXI	GCAGC	1 cut(s)	693
BshFI	GGCC	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	515
BsiHKCI	CYCGRG	1 cut(s)	365
BsiSI	CCGG	1 cut(s)	545
BslFI	GGGAC	2 cut(s)	199, 244
BslI	CCNNNNNNNGG	2 cut(s)	237, 267
BsmFI	GGGAC	2 cut(s)	199, 244
BsnI	GGCC	1 cut(s)	111
BsoBI	CYCGRG	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	515
Bsp143I	GATC	3 cut(s)	154, 227, 280
Bsp19I	CCATGG	1 cut(s)	113
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	3 cut(s)	268, 299, 373
BspHI	TCATGA	1 cut(s)	643
BspLI	GGNNCC	3 cut(s)	156, 229, 576
BspPI	GGATC	5 cut(s)	149, 162, 222, 235, 288
BsrDI	GCAATG	1 cut(s)	194
BsrI	ACTGG	3 cut(s)	156, 303, 499
BssECI	CCNNGG	2 cut(s)	113, 378
BssMI	GATC	3 cut(s)	154, 227, 280
BssT1I	CCWWGG	2 cut(s)	113, 378
Bst2UI	CCWGG	1 cut(s)	556
Bst6I	CTCTTC	1 cut(s)	383
BstBAI	YACGTR	1 cut(s)	203
BstC8I	GCNNGC	2 cut(s)	273, 435
BstDEI	CTNAG	3 cut(s)	276, 286, 360
BstDSI	CCRYGG	1 cut(s)	113
BstENI	CCTNNNNNAGG	1 cut(s)	235
BstKTI	GATC	3 cut(s)	157, 230, 283
BstMBI	GATC	3 cut(s)	154, 227, 280
BstNI	CCWGG	1 cut(s)	556
BstSCI	CCNGG	1 cut(s)	554
BstSLI	GKGCMC	1 cut(s)	515
BstSNI	TACGTA	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	693
BstX2I	RGATCY	3 cut(s)	154, 227, 280
BstYI	RGATCY	3 cut(s)	154, 227, 280
BsuI	GTATCC	2 cut(s)	333, 405
BsuRI	GGCC	1 cut(s)	111
BtgI	CCRYGG	1 cut(s)	113
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	2 cut(s)	174, 492
Cac8I	GCNNGC	2 cut(s)	273, 435
CciI	TCATGA	1 cut(s)	643
Cfr13I	GGNCC	3 cut(s)	110, 191, 558
CviAII	CATG	2 cut(s)	114, 644
DdeI	CTNAG	3 cut(s)	276, 286, 360
DpnI	GATC	3 cut(s)	156, 229, 282
DpnII	GATC	3 cut(s)	154, 227, 280
Eam1104I	CTCTTC	1 cut(s)	383
EarI	CTCTTC	1 cut(s)	383
Eco105I	TACGTA	1 cut(s)	203
Eco130I	CCWWGG	2 cut(s)	113, 378
Eco32I	GATATC	1 cut(s)	243
Eco47I	GGWCC	2 cut(s)	191, 558
Eco88I	CYCGRG	1 cut(s)	365
EcoNI	CCTNNNNNAGG	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	554
EcoRV	GATATC	1 cut(s)	243
EcoT14I	CCWWGG	2 cut(s)	113, 378
EcoT22I	ATGCAT	1 cut(s)	667
ErhI	CCWWGG	2 cut(s)	113, 378
FaeI	CATG	2 cut(s)	117, 647
FaqI	GGGAC	2 cut(s)	199, 244
FatI	CATG	2 cut(s)	113, 643
FblI	GTMKAC	1 cut(s)	609
Fnu4HI	GCNGC	1 cut(s)	707
Fsp4HI	GCNGC	1 cut(s)	707
FspBI	CTAG	1 cut(s)	629
GluI	GCNGC	1 cut(s)	707
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	1 cut(s)	545
Hin1II	CATG	2 cut(s)	117, 647
HinfI	GANTC	4 cut(s)	47, 257, 527, 566
HpaII	CCGG	1 cut(s)	545
HphI	GGTGA	1 cut(s)	5
Hpy166II	GTNNAC	3 cut(s)	54, 513, 610
Hpy188I	TCNGA	5 cut(s)	67, 78, 139, 349, 565
Hpy188III	TCNNGA	4 cut(s)	19, 367, 479, 644
Hpy8I	GTNNAC	3 cut(s)	54, 513, 610
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	7 cut(s)	217, 254, 339, 413, 513, 665, 709
HpyF3I	CTNAG	3 cut(s)	276, 286, 360
HpySE526I	ACGT	1 cut(s)	202
Hsp92II	CATG	2 cut(s)	117, 647
Kzo9I	GATC	3 cut(s)	154, 227, 280
LmnI	GCTCC	1 cut(s)	580
Lsp1109I	GCAGC	1 cut(s)	693
LweI	GCATC	2 cut(s)	414, 674
MaeI	CTAG	1 cut(s)	629
MaeII	ACGT	1 cut(s)	202
MalI	GATC	3 cut(s)	156, 229, 282
MboI	GATC	3 cut(s)	154, 227, 280
MboII	GAAGA	2 cut(s)	237, 400
MflI	RGATCY	3 cut(s)	154, 227, 280
MhlI	GDGCHC	1 cut(s)	515
MluCI	AATT	4 cut(s)	146, 354, 633, 711
MlyI	GAGTC	2 cut(s)	56, 266
MmeI	TCCRAC	1 cut(s)	350
MnlI	CCTC	6 cut(s)	26, 72, 271, 384, 448, 571
Mph1103I	ATGCAT	1 cut(s)	667
MseI	TTAA	1 cut(s)	506
MslI	CAYNNNNRTG	2 cut(s)	648, 660
MspI	CCGG	1 cut(s)	545
MspR9I	CCNGG	1 cut(s)	556
MvaI	CCWGG	1 cut(s)	556
NcoI	CCATGG	1 cut(s)	113
NdeII	GATC	3 cut(s)	154, 227, 280
NlaIII	CATG	2 cut(s)	117, 647
NlaIV	GGNNCC	3 cut(s)	156, 229, 576
NsiI	ATGCAT	1 cut(s)	667
PaeR7I	CTCGAG	1 cut(s)	365
PagI	TCATGA	1 cut(s)	643
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PfeI	GAWTC	2 cut(s)	527, 566
PfoI	TCCNGGA	1 cut(s)	554
PkrI	GCNGC	1 cut(s)	708
PleI	GAGTC	2 cut(s)	55, 265
PpsI	GAGTC	2 cut(s)	55, 265
Ppu21I	YACGTR	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	554
PspGI	CCWGG	1 cut(s)	554
PspN4I	GGNNCC	3 cut(s)	156, 229, 576
PspPI	GGNCC	3 cut(s)	110, 191, 558
PsuI	RGATCY	3 cut(s)	154, 227, 280
RseI	CAYNNNNRTG	2 cut(s)	648, 660
SaqAI	TTAA	1 cut(s)	506
SatI	GCNGC	1 cut(s)	707
Sau3AI	GATC	3 cut(s)	154, 227, 280
Sau96I	GGNCC	3 cut(s)	110, 191, 558
SchI	GAGTC	2 cut(s)	56, 266
ScrFI	CCNGG	1 cut(s)	556
SduI	GDGCHC	1 cut(s)	515
SfaNI	GCATC	2 cut(s)	414, 674
Sfr274I	CTCGAG	1 cut(s)	365
SinI	GGWCC	2 cut(s)	191, 558
SlaI	CTCGAG	1 cut(s)	365
SmiMI	CAYNNNNRTG	2 cut(s)	648, 660
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
SnaBI	TACGTA	1 cut(s)	203
Sse9I	AATT	4 cut(s)	146, 354, 633, 711
SspMI	CTAG	1 cut(s)	629
StyD4I	CCNGG	1 cut(s)	554
StyI	CCWWGG	2 cut(s)	113, 378
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	3 cut(s)	45, 59, 366
TasI	AATT	4 cut(s)	146, 354, 633, 711
TfiI	GAWTC	2 cut(s)	527, 566
Tru1I	TTAA	1 cut(s)	506
Tru9I	TTAA	1 cut(s)	506
TscAI	CASTG	2 cut(s)	174, 499
TseI	GCWGC	1 cut(s)	706
TspDTI	ATGAA	5 cut(s)	31, 45, 401, 486, 632
TspGWI	ACGGA	1 cut(s)	118
TspRI	CASTG	2 cut(s)	174, 499
VneI	GTGCAC	1 cut(s)	511
VpaK11BI	GGWCC	2 cut(s)	191, 558
XagI	CCTNNNNNAGG	1 cut(s)	235
XapI	RAATTY	2 cut(s)	354, 633
XhoI	CTCGAG	1 cut(s)	365
XmiI	GTMKAC	1 cut(s)	609
XspI	CTAG	1 cut(s)	629
Zsp2I	ATGCAT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.