Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000180

Orthogroup ID

OG0017835

Physical Location & Seq

Genomic Coordinates Forward (+)

162836 .. 166766

Gene Structure 3931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_180G00433330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTGGTCCTCGTATCTGACTGGACGCTCAGATGGGAGGGCAAATATCTCGTCTTATGAAGATTTGTGCCCATTACTACCTTGTATGGTTTTGCACAGAATAGGATCCTGTGTTAGGATATCTTCAAATGCGGAGTCCCTTATCTGGCGTGCTAAGAGGCTTTTCTTCCTGAATGGTGAACAGGATCTCTCAGCATTTCTACTGGTGGATTTGGGAATAGCTATTGAAGTGGCACAAATAGTTGATGAAGCTCTTGATGGAAGCAATACTGGATTGGTCTTAAAGTGCATAAAGATAGCTGATTCCCATTTATTCAATCTGGTTCAATCCTTGACCTCTGAATCAATGGCTCCATTCCTTTCCCACTTTTCAGCAACATTTGTCTACTCAAAAGTGGTTTTACTAGGAATTTATTTTCTTGAGCGTGAGCATAGACTAACAGAAACTGTCATCTTGTGGCTTTCCGAAGATCAAAGCTTTTGGGACGATATTGAGGATGGGCCAAGGCCTTTGGGTCCTCTTGGCTTACAACAGTTCTATCTAGATATGAAGTTCGTCATATGCTTTGCTTCACAAGGTCATTTCCTATCCCAAAATTTGCAACGCGTTATCAATGAGATCATATCTAAAGCAATGACAGCATTTTCTGCAACAGGCATGGATCCCTATAGGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

225

Amino Acids

25.31

Weight (kDa)

5.06

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017835)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003654 RLG00000008421 RLG00000014808
rosa_multiflora	Rmu_sc0001969.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433330 Rroxscaffold_6G00407280 Rroxscaffold_7G00213750
rosa_rugosa	Rorug04G0114200
rosa_samantha	Rh1DG108800 Rh4CG173200 Rh4DG156500
rosa_wichuraiana	Rw4G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	384
AccII	CGCG	1 cut(s)	606
AciI	CCGC	1 cut(s)	131
AclWI	GGATC	5 cut(s)	99, 112, 192, 656, 669
AcsI	RAATTY	2 cut(s)	408, 595
AfiI	CCNNNNNNNGG	2 cut(s)	114, 144
AflIII	ACRYGT	1 cut(s)	604
AgsI	TTSAA	4 cut(s)	126, 227, 316, 326
AluBI	AGCT	4 cut(s)	221, 251, 299, 477
AluI	AGCT	4 cut(s)	221, 251, 299, 477
AlwI	GGATC	5 cut(s)	99, 112, 192, 656, 669
AlwNI	CAGNNNCTG	1 cut(s)	446
AoxI	GGCC	2 cut(s)	500, 506
ApoI	RAATTY	2 cut(s)	408, 595
ArsI	GACNNNNNNTTYG	4 cut(s)	35, 67, 119, 151
AspS9I	GGNCC	3 cut(s)	6, 500, 515
AsuHPI	GGTGA	1 cut(s)	188
AvaII	GGWCC	2 cut(s)	6, 515
BaeGI	GKGCMC	1 cut(s)	71
BamHI	GGATCC	2 cut(s)	104, 661
BccI	CCATC	3 cut(s)	26, 251, 491
BcgI	CGANNNNNNTGC	2 cut(s)	30, 64
BfaI	CTAG	2 cut(s)	404, 542
BfmI	CTRYAG	1 cut(s)	667
Bme18I	GGWCC	2 cut(s)	6, 515
BmgT120I	GGNCC	3 cut(s)	6, 500, 515
BmiI	GGNNCC	4 cut(s)	106, 351, 516, 663
BpuEI	CTTGAG	1 cut(s)	440
BsaJI	CCNNGG	1 cut(s)	503
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 144
Bse1I	ACTGG	3 cut(s)	25, 207, 274
Bse3DI	GCAATG	1 cut(s)	639
BseDI	CCNNGG	1 cut(s)	503
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	2 cut(s)	114, 144
BseMI	GCAATG	1 cut(s)	639
BseMII	CTCAG	2 cut(s)	42, 204
BseNI	ACTGG	3 cut(s)	25, 207, 274
BseSI	GKGCMC	1 cut(s)	71
Bsh1236I	CGCG	1 cut(s)	606
BshFI	GGCC	2 cut(s)	502, 508
BslFI	GGGAC	2 cut(s)	121, 497
BslI	CCNNNNNNNGG	2 cut(s)	114, 144
BsmFI	GGGAC	2 cut(s)	121, 497
BsnI	GGCC	2 cut(s)	502, 508
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp143I	GATC	5 cut(s)	104, 184, 469, 618, 661
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	2 cut(s)	502, 508
BspCNI	CTCAG	2 cut(s)	41, 203
BspFNI	CGCG	1 cut(s)	606
BspLI	GGNNCC	4 cut(s)	106, 351, 516, 663
BspPI	GGATC	5 cut(s)	99, 112, 192, 656, 669
BsrDI	GCAATG	1 cut(s)	639
BsrI	ACTGG	3 cut(s)	25, 207, 274
BssECI	CCNNGG	1 cut(s)	503
BssMI	GATC	5 cut(s)	104, 184, 469, 618, 661
BssT1I	CCWWGG	1 cut(s)	503
Bst4CI	ACNGT	2 cut(s)	448, 534
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	3 cut(s)	28, 153, 190
BstENI	CCTNNNNNAGG	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	502
BstFNI	CGCG	1 cut(s)	606
BstKTI	GATC	5 cut(s)	107, 187, 472, 621, 664
BstMBI	GATC	5 cut(s)	104, 184, 469, 618, 661
BstMWI	GCNNNNNNNGC	2 cut(s)	638, 647
BstSFI	CTRYAG	1 cut(s)	667
BstSLI	GKGCMC	1 cut(s)	71
BstUI	CGCG	1 cut(s)	606
BstX2I	RGATCY	3 cut(s)	104, 184, 661
BstYI	RGATCY	3 cut(s)	104, 184, 661
BsuRI	GGCC	2 cut(s)	502, 508
BtsCI	GGATG	1 cut(s)	502
Cac8I	GCNNGC	1 cut(s)	150
CaiI	CAGNNNCTG	1 cut(s)	446
Cfr13I	GGNCC	3 cut(s)	6, 500, 515
CseI	GACGC	1 cut(s)	33
CviAII	CATG	1 cut(s)	658
DdeI	CTNAG	3 cut(s)	28, 153, 190
DpnI	GATC	5 cut(s)	106, 186, 471, 620, 663
DpnII	GATC	5 cut(s)	104, 184, 469, 618, 661
Eco130I	CCWWGG	1 cut(s)	503
Eco147I	AGGCCT	1 cut(s)	508
Eco32I	GATATC	1 cut(s)	120
Eco47I	GGWCC	2 cut(s)	6, 515
EcoNI	CCTNNNNNAGG	1 cut(s)	112
EcoO109I	RGGNCCY	1 cut(s)	515
EcoRV	GATATC	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	503
ErhI	CCWWGG	1 cut(s)	503
FaeI	CATG	1 cut(s)	661
FaqI	GGGAC	2 cut(s)	121, 497
FatI	CATG	1 cut(s)	657
FauNDI	CATATG	1 cut(s)	560
FblI	GTMKAC	1 cut(s)	384
FokI	GGATG	1 cut(s)	509
FspBI	CTAG	2 cut(s)	404, 542
HaeIII	GGCC	2 cut(s)	502, 508
HgaI	GACGC	1 cut(s)	33
Hin1II	CATG	1 cut(s)	661
HindIII	AAGCTT	1 cut(s)	475
HinfI	GANTC	3 cut(s)	134, 302, 341
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	2 cut(s)	179, 385
Hpy188I	TCNGA	4 cut(s)	18, 31, 340, 466
Hpy188III	TCNNGA	4 cut(s)	169, 254, 419, 542
Hpy8I	GTNNAC	2 cut(s)	179, 385
HpyCH4III	ACNGT	2 cut(s)	448, 534
HpyCH4V	TGCA	4 cut(s)	94, 288, 601, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	638, 647
HpyF3I	CTNAG	3 cut(s)	28, 153, 190
Hsp92II	CATG	1 cut(s)	661
Kzo9I	GATC	5 cut(s)	104, 184, 469, 618, 661
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	9 cut(s)	6, 121, 130, 167, 182, 188, 255, 305, 639
MaeI	CTAG	2 cut(s)	404, 542
MalI	GATC	5 cut(s)	106, 186, 471, 620, 663
MboI	GATC	5 cut(s)	104, 184, 469, 618, 661
MboII	GAAGA	4 cut(s)	71, 114, 157, 479
MflI	RGATCY	3 cut(s)	104, 184, 661
MhlI	GDGCHC	1 cut(s)	71
MluCI	AATT	2 cut(s)	408, 595
MluI	ACGCGT	1 cut(s)	604
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	6 cut(s)	19, 30, 150, 346, 487, 528
MseI	TTAA	1 cut(s)	281
MvnI	CGCG	1 cut(s)	606
MwoI	GCNNNNNNNGC	2 cut(s)	638, 647
NdeI	CATATG	1 cut(s)	560
NdeII	GATC	5 cut(s)	104, 184, 469, 618, 661
NlaIII	CATG	1 cut(s)	661
NlaIV	GGNNCC	4 cut(s)	106, 351, 516, 663
PceI	AGGCCT	1 cut(s)	508
PfeI	GAWTC	2 cut(s)	302, 341
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PpuMI	RGGWCCY	1 cut(s)	515
Psp5II	RGGWCCY	1 cut(s)	515
PspN4I	GGNNCC	4 cut(s)	106, 351, 516, 663
PspPI	GGNCC	3 cut(s)	6, 500, 515
PspPPI	RGGWCCY	1 cut(s)	515
PstNI	CAGNNNCTG	1 cut(s)	446
PsuI	RGATCY	3 cut(s)	104, 184, 661
SaqAI	TTAA	1 cut(s)	281
Sau3AI	GATC	5 cut(s)	104, 184, 469, 618, 661
Sau96I	GGNCC	3 cut(s)	6, 500, 515
SchI	GAGTC	1 cut(s)	143
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	7 cut(s)	82, 223, 253, 301, 338, 479, 580
SfcI	CTRYAG	1 cut(s)	667
SinI	GGWCC	2 cut(s)	6, 515
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	2 cut(s)	408, 595
SseBI	AGGCCT	1 cut(s)	508
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	2 cut(s)	404, 542
StuI	AGGCCT	1 cut(s)	508
StyI	CCWWGG	1 cut(s)	503
TaaI	ACNGT	2 cut(s)	448, 534
TasI	AATT	2 cut(s)	408, 595
TfiI	GAWTC	2 cut(s)	302, 341
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TspDTI	ATGAA	3 cut(s)	72, 261, 563
VpaK11BI	GGWCC	2 cut(s)	6, 515
XagI	CCTNNNNNAGG	1 cut(s)	112
XapI	RAATTY	2 cut(s)	408, 595
XbaI	TCTAGA	1 cut(s)	541
XmiI	GTMKAC	1 cut(s)	384
XspI	CTAG	2 cut(s)	404, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.