Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0017835

Physical Location & Seq

Genomic Coordinates Forward (+)

57814699 .. 57815916

Gene Structure 1218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014808

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTGCAGCCCATTACTATCTAGTATGGTTTTGCACATAACAGGATCCTGTGTTAGGATATCTTCAAATGCGGAGTCCCTCATCTGGCGTGCTGAGAGGCTTTTCTTCCTGAATGGTGAACAGGATCTCTCAGCATTTCTACTGGTGGATTTGGGAATAGTCAAGTATCCAACTTACAAGTGCATAGTCTCACAACAAATTTTCTTAACTCGAGATGATTTTCTTGGCTATGAAGAGGTGTCCTTTTATCTTTGTGCAAAAGTAATGATGCCCACGCTTGCCTTTACTATATATAATGGTTTTGCTTTGCAGGCTATTGAAGTGGCACAAATAGTTGATGAAGCTCTTGATGGAAGCAACACTGGATTGGTCTTAAAGTGCATAAAGATAGCTGATTCCCATTTATCCAATCCGGTTCAATCCTTGACCTCTGAATCAATGGCTCCATTCCTTTCCCACTTTTCAGCAACATTTGTCTACTCAAAAGTGGTTTCACTAGGAATTTCTTTTCTTGAGCGTGAGCATAGGTACAATGATGCTATCTATTTACTAAAAAGGCTACTGAATTGTTTCGCTCGTGATGGTAGAACAGGATACTGGACACTACGATTATCAATTGATTTGGAGCACATGGGTTATCTGAATGAGAGCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

219

Amino Acids

24.58

Weight (kDa)

5.51

Isoelectric Point (pI)

27.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAN1_TPR	PF21170	124 - 209	3.2e-07	Fanconi-associated nuclease 1, TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017835)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003654 RLG00000008421 RLG00000014808
rosa_multiflora	Rmu_sc0001969.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433330 Rroxscaffold_6G00407280 Rroxscaffold_7G00213750
rosa_rugosa	Rorug04G0114200
rosa_samantha	Rh1DG108800 Rh4CG173200 Rh4DG156500
rosa_wichuraiana	Rw4G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	477
AciI	CCGC	1 cut(s)	71
AclWI	GGATC	3 cut(s)	39, 52, 132
AcsI	RAATTY	2 cut(s)	198, 501
AfaI	GTAC	1 cut(s)	530
AfiI	CCNNNNNNNGG	2 cut(s)	54, 84
AgsI	TTSAA	3 cut(s)	66, 320, 419
AluBI	AGCT	2 cut(s)	344, 392
AluI	AGCT	2 cut(s)	344, 392
Alw21I	GWGCWC	1 cut(s)	630
Alw26I	GTCTC	1 cut(s)	193
AlwI	GGATC	3 cut(s)	39, 52, 132
Ama87I	CYCGRG	1 cut(s)	210
ApeKI	GCWGC	1 cut(s)	6
ApoI	RAATTY	2 cut(s)	198, 501
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
Asp700I	GAANNNNTTC	1 cut(s)	569
AsuHPI	GGTGA	1 cut(s)	128
AvaI	CYCGRG	1 cut(s)	210
BamHI	GGATCC	1 cut(s)	44
BauI	CACGAG	1 cut(s)	576
Bbv12I	GWGCWC	1 cut(s)	630
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	2 cut(s)	344, 575
BciVI	GTATCC	2 cut(s)	177, 587
BcoDI	GTCTC	1 cut(s)	193
BfaI	CTAG	2 cut(s)	21, 497
BfuI	GTATCC	2 cut(s)	177, 587
BisI	GCNGC	1 cut(s)	7
BlsI	GCNGC	1 cut(s)	8
BmeT110I	CYCGRG	1 cut(s)	210
BmiI	GGNNCC	2 cut(s)	46, 444
BmsI	GCATC	2 cut(s)	258, 526
BpuEI	CTTGAG	1 cut(s)	533
BsaWI	WCCGGW	1 cut(s)	412
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 84
Bse1I	ACTGG	3 cut(s)	147, 367, 602
BseLI	CCNNNNNNNGG	2 cut(s)	54, 84
BseMII	CTCAG	2 cut(s)	84, 144
BseNI	ACTGG	3 cut(s)	147, 367, 602
BseXI	GCAGC	1 cut(s)	18
BsgI	GTGCAG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	630
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	413
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	2 cut(s)	54, 84
BsmAI	GTCTC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	61
BsoBI	CYCGRG	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	630
Bsp143I	GATC	2 cut(s)	44, 124
BspACI	CCGC	1 cut(s)	71
BspCNI	CTCAG	2 cut(s)	85, 143
BspLI	GGNNCC	2 cut(s)	46, 444
BspPI	GGATC	3 cut(s)	39, 52, 132
BsrI	ACTGG	3 cut(s)	147, 367, 602
BssMI	GATC	2 cut(s)	44, 124
BssSI	CACGAG	1 cut(s)	576
Bst2BI	CACGAG	1 cut(s)	576
Bst6I	CTCTTC	1 cut(s)	228
BstC8I	GCNNGC	3 cut(s)	90, 279, 312
BstDEI	CTNAG	2 cut(s)	93, 130
BstENI	CCTNNNNNAGG	1 cut(s)	52
BstKTI	GATC	2 cut(s)	47, 127
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	2 cut(s)	44, 124
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstV1I	GCAGC	1 cut(s)	18
BstX2I	RGATCY	2 cut(s)	44, 124
BstYI	RGATCY	2 cut(s)	44, 124
BsuI	GTATCC	2 cut(s)	177, 587
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	3 cut(s)	90, 279, 312
Csp6I	GTAC	1 cut(s)	529
CviAII	CATG	1 cut(s)	631
CviJI	RGCY	9 cut(s)	9, 100, 228, 314, 344, 392, 443, 559, 651
CviKI_1	RGCY	9 cut(s)	9, 100, 228, 314, 344, 392, 443, 559, 651
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	2 cut(s)	93, 130
DpnI	GATC	2 cut(s)	46, 126
DpnII	GATC	2 cut(s)	44, 124
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco32I	GATATC	1 cut(s)	60
Eco88I	CYCGRG	1 cut(s)	210
EcoNI	CCTNNNNNAGG	1 cut(s)	52
EcoRV	GATATC	1 cut(s)	60
FaeI	CATG	1 cut(s)	634
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	1 cut(s)	630
FblI	GTMKAC	1 cut(s)	477
Fnu4HI	GCNGC	1 cut(s)	7
Fsp4HI	GCNGC	1 cut(s)	7
FspBI	CTAG	2 cut(s)	21, 497
GluI	GCNGC	1 cut(s)	7
HapII	CCGG	1 cut(s)	413
Hin1II	CATG	1 cut(s)	634
HinfI	GANTC	3 cut(s)	74, 395, 434
HpaII	CCGG	1 cut(s)	413
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	2 cut(s)	119, 478
Hpy188I	TCNGA	2 cut(s)	433, 642
Hpy188III	TCNNGA	5 cut(s)	109, 212, 347, 512, 578
Hpy8I	GTNNAC	2 cut(s)	119, 478
HpyCH4V	TGCA	6 cut(s)	6, 34, 183, 257, 310, 381
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	2 cut(s)	93, 130
Hsp92II	CATG	1 cut(s)	634
Kzo9I	GATC	2 cut(s)	44, 124
LmnI	GCTCC	2 cut(s)	448, 625
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	2 cut(s)	258, 526
MaeI	CTAG	2 cut(s)	21, 497
MalI	GATC	2 cut(s)	46, 126
MboI	GATC	2 cut(s)	44, 124
MboII	GAAGA	3 cut(s)	54, 97, 245
MfeI	CAATTG	1 cut(s)	615
MflI	RGATCY	2 cut(s)	44, 124
MhlI	GDGCHC	1 cut(s)	630
MluCI	AATT	4 cut(s)	198, 501, 565, 615
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	194
MnlI	CCTC	4 cut(s)	89, 90, 229, 439
MroXI	GAANNNNTTC	1 cut(s)	569
MseI	TTAA	2 cut(s)	206, 374
MspI	CCGG	1 cut(s)	413
MunI	CAATTG	1 cut(s)	615
MwoI	GCNNNNNNNGC	1 cut(s)	311
NdeII	GATC	2 cut(s)	44, 124
NlaIII	CATG	1 cut(s)	634
NlaIV	GGNNCC	2 cut(s)	46, 444
PaeR7I	CTCGAG	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	569
PfeI	GAWTC	2 cut(s)	395, 434
PkrI	GCNGC	1 cut(s)	8
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
PspN4I	GGNNCC	2 cut(s)	46, 444
PsuI	RGATCY	2 cut(s)	44, 124
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
SaqAI	TTAA	2 cut(s)	206, 374
SatI	GCNGC	1 cut(s)	7
Sau3AI	GATC	2 cut(s)	44, 124
SchI	GAGTC	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	630
SetI	ASST	5 cut(s)	240, 346, 394, 431, 530
SfaNI	GCATC	2 cut(s)	258, 526
Sfr274I	CTCGAG	1 cut(s)	210
SlaI	CTCGAG	1 cut(s)	210
SmlI	CTYRAG	2 cut(s)	210, 512
SmoI	CTYRAG	2 cut(s)	210, 512
Sse9I	AATT	4 cut(s)	198, 501, 565, 615
SsiI	CCGC	1 cut(s)	71
SspMI	CTAG	2 cut(s)	21, 497
TaqI	TCGA	1 cut(s)	211
TasI	AATT	4 cut(s)	198, 501, 565, 615
TfiI	GAWTC	2 cut(s)	395, 434
Tru1I	TTAA	2 cut(s)	206, 374
Tru9I	TTAA	2 cut(s)	206, 374
TscAI	CASTG	1 cut(s)	367
TseI	GCWGC	1 cut(s)	6
TspDTI	ATGAA	2 cut(s)	246, 354
TspRI	CASTG	1 cut(s)	367
XagI	CCTNNNNNAGG	1 cut(s)	52
XapI	RAATTY	2 cut(s)	198, 501
XhoI	CTCGAG	1 cut(s)	210
XmiI	GTMKAC	1 cut(s)	477
XmnI	GAANNNNTTC	1 cut(s)	569
XspI	CTAG	2 cut(s)	21, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.