Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0017835

Physical Location & Seq

Genomic Coordinates Forward (+)

64184658 .. 64188320

Gene Structure 3663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00213750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTCTTCGTGGACGCTCGATGGGAGGGCAAATATCTCGTCTTATGAAGATTTGTGCCCATTACTACCTAGTATGGTTTTGCACAGAATAGGATCCTGTGTTAGGATATCTTCAAATGCGGAGTCCCTTATCTGGCGTGCTAAGAGGCTTTTCTTCCTGAATGGTGAACAGGATCTCTCAGCATTTCTACTGGTGGATTTGGGAATAGCTATTGAAGTGGCACAAATAGTTGATGAAGCTCTTGATGGAAGCAATACTGGATTGGTCTTAAAGTGCATAAAGATAGCTGATTCCCATTTATTCAATCTGGTTCAATCCTTGACCTCTGAATCAATGGCTCCATTCCTTTCCCACTTTTCAGCAACATTTGTCTACTCAAAAGTGGTTTTACTAGGAATTTATTTTCTTGAGCGTGAGCATAGACTAACAGAAACTGTCATCTTGTGGCTTTCCGAAGATCAAAGCTTTTGGGACGATATTGAGGATGGGCCAAGGCCTTTGGGTCCTCTTGGCTTACAACAGTTCTATCTAGATATGAAGTTCGTCATATGCTTTGCTTCACAAGGTCATTTCCTATCCCAAAATTTGCAACGCGTTATCAATGAGATCATATCTAAAGCAATGACAGCATTTTCTGCAACAGGCATGGATCCCTATAGGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

221

Amino Acids

24.83

Weight (kDa)

4.94

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017835)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003654 RLG00000008421 RLG00000014808
rosa_multiflora	Rmu_sc0001969.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433330 Rroxscaffold_6G00407280 Rroxscaffold_7G00213750
rosa_rugosa	Rorug04G0114200
rosa_samantha	Rh1DG108800 Rh4CG173200 Rh4DG156500
rosa_wichuraiana	Rw4G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	372
AccII	CGCG	1 cut(s)	594
AciI	CCGC	1 cut(s)	119
AclWI	GGATC	5 cut(s)	87, 100, 180, 644, 657
AcsI	RAATTY	2 cut(s)	396, 583
AfiI	CCNNNNNNNGG	2 cut(s)	102, 132
AflIII	ACRYGT	1 cut(s)	592
AgsI	TTSAA	4 cut(s)	114, 215, 304, 314
AluBI	AGCT	4 cut(s)	209, 239, 287, 465
AluI	AGCT	4 cut(s)	209, 239, 287, 465
AlwI	GGATC	5 cut(s)	87, 100, 180, 644, 657
AlwNI	CAGNNNCTG	1 cut(s)	434
AoxI	GGCC	2 cut(s)	488, 494
ApoI	RAATTY	2 cut(s)	396, 583
ArsI	GACNNNNNNTTYG	4 cut(s)	23, 55, 107, 139
AspS9I	GGNCC	2 cut(s)	488, 503
AsuHPI	GGTGA	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	503
BaeGI	GKGCMC	1 cut(s)	59
BamHI	GGATCC	2 cut(s)	92, 649
BccI	CCATC	3 cut(s)	14, 239, 479
BcgI	CGANNNNNNTGC	2 cut(s)	18, 52
BfaI	CTAG	3 cut(s)	69, 392, 530
BfmI	CTRYAG	1 cut(s)	655
Bme18I	GGWCC	1 cut(s)	503
BmgT120I	GGNCC	2 cut(s)	488, 503
BmiI	GGNNCC	4 cut(s)	94, 339, 504, 651
BpuEI	CTTGAG	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	491
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 132
Bse1I	ACTGG	2 cut(s)	195, 262
Bse3DI	GCAATG	1 cut(s)	627
BseDI	CCNNGG	1 cut(s)	491
BseGI	GGATG	1 cut(s)	490
BseLI	CCNNNNNNNGG	2 cut(s)	102, 132
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	2 cut(s)	195, 262
BseSI	GKGCMC	1 cut(s)	59
Bsh1236I	CGCG	1 cut(s)	594
BshFI	GGCC	2 cut(s)	490, 496
BslFI	GGGAC	2 cut(s)	109, 485
BslI	CCNNNNNNNGG	2 cut(s)	102, 132
BsmFI	GGGAC	2 cut(s)	109, 485
BsnI	GGCC	2 cut(s)	490, 496
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp143I	GATC	5 cut(s)	92, 172, 457, 606, 649
BspACI	CCGC	1 cut(s)	119
BspANI	GGCC	2 cut(s)	490, 496
BspCNI	CTCAG	1 cut(s)	191
BspFNI	CGCG	1 cut(s)	594
BspLI	GGNNCC	4 cut(s)	94, 339, 504, 651
BspPI	GGATC	5 cut(s)	87, 100, 180, 644, 657
BsrDI	GCAATG	1 cut(s)	627
BsrI	ACTGG	2 cut(s)	195, 262
BssECI	CCNNGG	1 cut(s)	491
BssMI	GATC	5 cut(s)	92, 172, 457, 606, 649
BssT1I	CCWWGG	1 cut(s)	491
Bst4CI	ACNGT	2 cut(s)	436, 522
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	2 cut(s)	141, 178
BstENI	CCTNNNNNAGG	1 cut(s)	100
BstF5I	GGATG	1 cut(s)	490
BstFNI	CGCG	1 cut(s)	594
BstKTI	GATC	5 cut(s)	95, 175, 460, 609, 652
BstMBI	GATC	5 cut(s)	92, 172, 457, 606, 649
BstMWI	GCNNNNNNNGC	2 cut(s)	626, 635
BstSFI	CTRYAG	1 cut(s)	655
BstSLI	GKGCMC	1 cut(s)	59
BstUI	CGCG	1 cut(s)	594
BstX2I	RGATCY	3 cut(s)	92, 172, 649
BstYI	RGATCY	3 cut(s)	92, 172, 649
BsuRI	GGCC	2 cut(s)	490, 496
BtsCI	GGATG	1 cut(s)	490
Cac8I	GCNNGC	1 cut(s)	138
CaiI	CAGNNNCTG	1 cut(s)	434
Cfr13I	GGNCC	2 cut(s)	488, 503
CseI	GACGC	1 cut(s)	22
CviAII	CATG	1 cut(s)	646
DdeI	CTNAG	2 cut(s)	141, 178
DpnI	GATC	5 cut(s)	94, 174, 459, 608, 651
DpnII	GATC	5 cut(s)	92, 172, 457, 606, 649
Eco130I	CCWWGG	1 cut(s)	491
Eco147I	AGGCCT	1 cut(s)	496
Eco32I	GATATC	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	503
EcoNI	CCTNNNNNAGG	1 cut(s)	100
EcoO109I	RGGNCCY	1 cut(s)	503
EcoRV	GATATC	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	491
ErhI	CCWWGG	1 cut(s)	491
FaeI	CATG	1 cut(s)	649
FaqI	GGGAC	2 cut(s)	109, 485
FatI	CATG	1 cut(s)	645
FauNDI	CATATG	1 cut(s)	548
FblI	GTMKAC	1 cut(s)	372
FokI	GGATG	1 cut(s)	497
FspBI	CTAG	3 cut(s)	69, 392, 530
HaeIII	GGCC	2 cut(s)	490, 496
HgaI	GACGC	1 cut(s)	22
Hin1II	CATG	1 cut(s)	649
HindIII	AAGCTT	1 cut(s)	463
HinfI	GANTC	3 cut(s)	122, 290, 329
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	3 cut(s)	12, 167, 373
Hpy188I	TCNGA	2 cut(s)	328, 454
Hpy188III	TCNNGA	4 cut(s)	157, 242, 407, 530
Hpy8I	GTNNAC	3 cut(s)	12, 167, 373
HpyCH4III	ACNGT	2 cut(s)	436, 522
HpyCH4V	TGCA	4 cut(s)	82, 276, 589, 638
HpyF10VI	GCNNNNNNNGC	2 cut(s)	626, 635
HpyF3I	CTNAG	2 cut(s)	141, 178
Hsp92II	CATG	1 cut(s)	649
Kzo9I	GATC	5 cut(s)	92, 172, 457, 606, 649
LmnI	GCTCC	1 cut(s)	343
LpnPI	CCDG	8 cut(s)	109, 118, 155, 170, 176, 243, 293, 627
MaeI	CTAG	3 cut(s)	69, 392, 530
MalI	GATC	5 cut(s)	94, 174, 459, 608, 651
MboI	GATC	5 cut(s)	92, 172, 457, 606, 649
MboII	GAAGA	4 cut(s)	59, 102, 145, 467
MflI	RGATCY	3 cut(s)	92, 172, 649
MhlI	GDGCHC	1 cut(s)	59
MluCI	AATT	2 cut(s)	396, 583
MluI	ACGCGT	1 cut(s)	592
MlyI	GAGTC	1 cut(s)	131
MnlI	CCTC	5 cut(s)	18, 138, 334, 475, 516
MseI	TTAA	1 cut(s)	269
MvnI	CGCG	1 cut(s)	594
MwoI	GCNNNNNNNGC	2 cut(s)	626, 635
NdeI	CATATG	1 cut(s)	548
NdeII	GATC	5 cut(s)	92, 172, 457, 606, 649
NlaIII	CATG	1 cut(s)	649
NlaIV	GGNNCC	4 cut(s)	94, 339, 504, 651
PceI	AGGCCT	1 cut(s)	496
PfeI	GAWTC	2 cut(s)	290, 329
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PpuMI	RGGWCCY	1 cut(s)	503
Psp5II	RGGWCCY	1 cut(s)	503
PspN4I	GGNNCC	4 cut(s)	94, 339, 504, 651
PspPI	GGNCC	2 cut(s)	488, 503
PspPPI	RGGWCCY	1 cut(s)	503
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	3 cut(s)	92, 172, 649
SaqAI	TTAA	1 cut(s)	269
Sau3AI	GATC	5 cut(s)	92, 172, 457, 606, 649
Sau96I	GGNCC	2 cut(s)	488, 503
SchI	GAGTC	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	59
SetI	ASST	7 cut(s)	70, 211, 241, 289, 326, 467, 568
SfcI	CTRYAG	1 cut(s)	655
SinI	GGWCC	1 cut(s)	503
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	2 cut(s)	396, 583
SseBI	AGGCCT	1 cut(s)	496
SsiI	CCGC	1 cut(s)	119
SspMI	CTAG	3 cut(s)	69, 392, 530
StuI	AGGCCT	1 cut(s)	496
StyI	CCWWGG	1 cut(s)	491
TaaI	ACNGT	2 cut(s)	436, 522
TaqI	TCGA	1 cut(s)	18
TasI	AATT	2 cut(s)	396, 583
TfiI	GAWTC	2 cut(s)	290, 329
Tru1I	TTAA	1 cut(s)	269
Tru9I	TTAA	1 cut(s)	269
TspDTI	ATGAA	3 cut(s)	60, 249, 551
VpaK11BI	GGWCC	1 cut(s)	503
XagI	CCTNNNNNAGG	1 cut(s)	100
XapI	RAATTY	2 cut(s)	396, 583
XbaI	TCTAGA	1 cut(s)	529
XmiI	GTMKAC	1 cut(s)	372
XspI	CTAG	3 cut(s)	69, 392, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.