RLG00000005583

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0019052
Physical Location & Seq
Reverse (-)
68771789 .. 68772253
465 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005583

Sequence Viewer

Length: 369 bp
ATGCGATCTAGAAATAGAAGAGGACATCGACGACCTCGTATCTCGACGAGGAGCGTAAGGTCGCCAGAGTTGAACGACGCGGCGATATCAAAGACGCCGATCAAATCAGATCTACTTCACCTTCATCCTTCTTGCCTTACGCTGCGGGATCGTGAGATAGCCGGATTGGTGTTAGAGGTAGTGGACTTAAAGACCTCGATGATCCATTTTCCGGCGACGTTATCCTCATGCGCAGAGATGATGAGAATCTACTCCGGCTCGTCTCCGTTTGGGTCCGCTTCGACTGAGAAAGGTAATGGAGATGGAATCGGCGACAGAATCGGCGATGGCGTTGAGGAAGGGTGCCGCCGGAGCAGAGCGAGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.5

Weight (kDa)

10.16

Isoelectric Point (pI)

71.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019052)

Species Orthologous Gene IDs
rosa_laevigata RLG00000005583 RLG00000026519 RLG00000030610 RLG00000034821 RLG00000036644
rosa_multiflora Rmu_sc0002251.1_g000006
rosa_samantha Rh2AG669900 Rh2DG493100 Rh3DG269500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 232
AccB1I GGYRCC 1 cut(s) 342
AccII CGCG 1 cut(s) 80
AciI CCGC 4 cut(s) 80, 145, 276, 346
AclWI GGATC 2 cut(s) 156, 196
AcyI GRCGYC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 211
AgsI TTSAA 1 cut(s) 73
Alw26I GTCTC 1 cut(s) 267
AlwI GGATC 2 cut(s) 156, 196
ApeKI GCWGC 1 cut(s) 142
AspLEI GCGC 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 273
AsuHPI GGTGA 1 cut(s) 110
AvaII GGWCC 1 cut(s) 273
BanI GGYRCC 1 cut(s) 342
BbvI GCAGC 1 cut(s) 129
BccI CCATC 3 cut(s) 296, 320, 357
BcoDI GTCTC 1 cut(s) 267
BfaI CTAG 1 cut(s) 9
BglII AGATCT 1 cut(s) 109
BisI GCNGC 3 cut(s) 81, 143, 346
BlsI GCNGC 3 cut(s) 82, 144, 347
Bme18I GGWCC 1 cut(s) 273
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 2 cut(s) 274, 344
BsaBI GATNNNNATC 1 cut(s) 245
BsaHI GRCGYC 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse8I GATNNNNATC 1 cut(s) 245
BseGI GGATG 1 cut(s) 124
BseJI GATNNNNATC 1 cut(s) 245
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMII CTCAG 1 cut(s) 276
BseRI GAGGAG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 80
BshNI GGYRCC 1 cut(s) 342
BsiSI CCGG 4 cut(s) 162, 212, 255, 349
BslI CCNNNNNNNGG 1 cut(s) 211
BsmAI GTCTC 1 cut(s) 267
BsmBI CGTCTC 1 cut(s) 267
Bsp143I GATC 5 cut(s) 5, 99, 109, 148, 201
BspACI CCGC 4 cut(s) 80, 145, 276, 346
BspCNI CTCAG 1 cut(s) 277
BspFNI CGCG 1 cut(s) 80
BspLI GGNNCC 2 cut(s) 274, 344
BspPI GGATC 2 cut(s) 156, 196
BspT107I GGYRCC 1 cut(s) 342
BssMI GATC 5 cut(s) 5, 99, 109, 148, 201
BssNI GRCGYC 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 13
BstACI GRCGYC 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 285
BstF5I GGATG 1 cut(s) 124
BstFNI CGCG 1 cut(s) 80
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 5 cut(s) 8, 102, 112, 151, 204
BstMAI GTCTC 1 cut(s) 267
BstMBI GATC 5 cut(s) 5, 99, 109, 148, 201
BstMWI GCNNNNNNNGC 1 cut(s) 351
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 129
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BtgZI GCGATG 1 cut(s) 339
BtsCI GGATG 1 cut(s) 124
CfoI GCGC 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 273
CseI GACGC 2 cut(s) 86, 103
CviAII CATG 1 cut(s) 228
CviJI RGCY 2 cut(s) 161, 258
CviKI_1 RGCY 2 cut(s) 161, 258
DdeI CTNAG 1 cut(s) 285
DpnI GATC 5 cut(s) 7, 101, 111, 150, 203
DpnII GATC 5 cut(s) 5, 99, 109, 148, 201
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Eco32I GATATC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 273
EcoRV GATATC 1 cut(s) 87
Esp3I CGTCTC 1 cut(s) 267
FaeI CATG 1 cut(s) 231
FaiI YATR 1 cut(s) 229
FatI CATG 1 cut(s) 227
FauI CCCGC 1 cut(s) 138
Fnu4HI GCNGC 3 cut(s) 81, 143, 346
FokI GGATG 1 cut(s) 111
Fsp4HI GCNGC 3 cut(s) 81, 143, 346
FspBI CTAG 1 cut(s) 9
FspI TGCGCA 1 cut(s) 232
GlaI GCGC 1 cut(s) 232
GluI GCNGC 3 cut(s) 81, 143, 346
HapII CCGG 4 cut(s) 162, 212, 255, 349
HgaI GACGC 2 cut(s) 86, 103
HhaI GCGC 1 cut(s) 233
Hin1I GRCGYC 1 cut(s) 95
Hin1II CATG 1 cut(s) 231
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HinfI GANTC 3 cut(s) 246, 306, 318
HpaII CCGG 4 cut(s) 162, 212, 255, 349
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 3 cut(s) 9, 43, 152
Hpy8I GTNNAC 1 cut(s) 184
Hpy99I CGWCG 4 cut(s) 33, 49, 80, 220
HpyAV CCTTC 3 cut(s) 131, 138, 332
HpyCH4IV ACGT 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 351
HpyF3I CTNAG 1 cut(s) 285
HpySE526I ACGT 1 cut(s) 218
Hsp92I GRCGYC 1 cut(s) 95
Hsp92II CATG 1 cut(s) 231
HspAI GCGC 1 cut(s) 231
Kzo9I GATC 5 cut(s) 5, 99, 109, 148, 201
LmnI GCTCC 2 cut(s) 51, 351
LpnPI CCDG 5 cut(s) 78, 175, 225, 268, 362
Lsp1109I GCAGC 1 cut(s) 129
MaeI CTAG 1 cut(s) 9
MaeII ACGT 1 cut(s) 218
MalI GATC 5 cut(s) 7, 101, 111, 150, 203
MboI GATC 5 cut(s) 5, 99, 109, 148, 201
MboII GAAGA 1 cut(s) 30
MflI RGATCY 1 cut(s) 109
MnlI CCTC 7 cut(s) 14, 42, 45, 169, 205, 235, 328
MseI TTAA 1 cut(s) 188
MspI CCGG 4 cut(s) 162, 212, 255, 349
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 351
NdeII GATC 5 cut(s) 5, 99, 109, 148, 201
NlaIII CATG 1 cut(s) 231
NlaIV GGNNCC 2 cut(s) 274, 344
NsbI TGCGCA 1 cut(s) 232
PcsI WCGNNNNNNNCGW 2 cut(s) 34, 327
PfeI GAWTC 3 cut(s) 246, 306, 318
PkrI GCNGC 3 cut(s) 82, 144, 347
PspN4I GGNNCC 2 cut(s) 274, 344
PspPI GGNCC 1 cut(s) 273
PsuI RGATCY 1 cut(s) 109
SaqAI TTAA 1 cut(s) 188
SatI GCNGC 3 cut(s) 81, 143, 346
Sau3AI GATC 5 cut(s) 5, 99, 109, 148, 201
Sau96I GGNCC 1 cut(s) 273
SetI ASST 7 cut(s) 37, 62, 123, 180, 197, 221, 295
SinI GGWCC 1 cut(s) 273
SsiI CCGC 4 cut(s) 80, 145, 276, 346
SspMI CTAG 1 cut(s) 9
TaiI ACGT 1 cut(s) 221
TaqI TCGA 4 cut(s) 28, 44, 197, 281
TauI GCSGC 2 cut(s) 83, 348
TfiI GAWTC 3 cut(s) 246, 306, 318
Tru1I TTAA 1 cut(s) 188
Tru9I TTAA 1 cut(s) 188
TseI GCWGC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 113
TspGWI ACGGA 1 cut(s) 255
VpaK11BI GGWCC 1 cut(s) 273
XbaI TCTAGA 1 cut(s) 8
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.