RLG00000030610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0019052
Physical Location & Seq
Forward (+)
64378878 .. 64379342
465 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030610

Sequence Viewer

Length: 369 bp
ATGCGATCTGGAAATAGAACAGGACATCGACGACCTCATATCTCGACGAGGAGCGTAAGGTCGCCGGAGTTGAACGACACGGCGGTATCGAAGACGCCGATCAGATCAGATCTACTTCACCTTCATCCTTCTCACCTTGCGCTGCGGGATCGTGAGATAGCCGAATTGGTGTTAGAGGCAGTGGATTTAAGGACCTCGGTGATCCATTTTCCGGCGACGTTATCCTCATGTGCGGAGATGATGAGAATCTACTCCGGCTTGTCTCCGTTCGGGTCCGCTTCGACTGAGAAAGGTAATGGAGATGGAATCGGCGACAGAATCGGCGATGGCGTTGAGGAAGGGTGTCGCCGGAGCCGAGCGAGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.44

Weight (kDa)

9.37

Isoelectric Point (pI)

66.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019052)

Species Orthologous Gene IDs
rosa_laevigata RLG00000005583 RLG00000026519 RLG00000030610 RLG00000034821 RLG00000036644
rosa_multiflora Rmu_sc0002251.1_g000006
rosa_samantha Rh2AG669900 Rh2DG493100 Rh3DG269500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 83, 145, 233, 276
AclWI GGATC 2 cut(s) 156, 196
AcyI GRCGYC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 211
AgsI TTSAA 1 cut(s) 73
Alw26I GTCTC 1 cut(s) 267
AlwI GGATC 2 cut(s) 156, 196
ApeKI GCWGC 1 cut(s) 142
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 2 cut(s) 192, 273
AsuHPI GGTGA 3 cut(s) 110, 125, 211
AvaII GGWCC 2 cut(s) 192, 273
BaeI ACNNNNGTAYC 2 cut(s) 69, 102
BbsI GAAGAC 1 cut(s) 98
BbvI GCAGC 1 cut(s) 129
BccI CCATC 3 cut(s) 296, 320, 357
BceAI ACGGC 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 267
BglII AGATCT 1 cut(s) 109
BisI GCNGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 144
Bme18I GGWCC 2 cut(s) 192, 273
BmgT120I GGNCC 2 cut(s) 192, 273
BmiI GGNNCC 2 cut(s) 274, 353
BpiI GAAGAC 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 245
BsaHI GRCGYC 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 195
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse8I GATNNNNATC 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 1 cut(s) 124
BseJI GATNNNNATC 1 cut(s) 245
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMII CTCAG 1 cut(s) 276
BseRI GAGGAG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 129
BsiSI CCGG 4 cut(s) 65, 212, 255, 349
BslI CCNNNNNNNGG 1 cut(s) 211
BsmAI GTCTC 1 cut(s) 267
Bsp143I GATC 6 cut(s) 5, 99, 104, 109, 148, 201
BspACI CCGC 4 cut(s) 83, 145, 233, 276
BspCNI CTCAG 1 cut(s) 277
BspLI GGNNCC 2 cut(s) 274, 353
BspPI GGATC 2 cut(s) 156, 196
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 6 cut(s) 5, 99, 104, 109, 148, 201
BssNI GRCGYC 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 285
BstF5I GGATG 1 cut(s) 124
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 6 cut(s) 8, 102, 107, 112, 151, 204
BstMAI GTCTC 1 cut(s) 267
BstMBI GATC 6 cut(s) 5, 99, 104, 109, 148, 201
BstV1I GCAGC 1 cut(s) 129
BstV2I GAAGAC 1 cut(s) 98
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BtgZI GCGATG 1 cut(s) 339
BtsCI GGATG 1 cut(s) 124
BtsI GCAGTG 1 cut(s) 186
BtsIMutI CAGTG 1 cut(s) 186
CfoI GCGC 1 cut(s) 142
Cfr13I GGNCC 2 cut(s) 192, 273
CseI GACGC 1 cut(s) 103
CviAII CATG 1 cut(s) 228
CviJI RGCY 3 cut(s) 161, 258, 354
CviKI_1 RGCY 3 cut(s) 161, 258, 354
DdeI CTNAG 1 cut(s) 285
DpnI GATC 6 cut(s) 7, 101, 106, 111, 150, 203
DpnII GATC 6 cut(s) 5, 99, 104, 109, 148, 201
Eco47I GGWCC 2 cut(s) 192, 273
EcoO109I RGGNCCY 1 cut(s) 192
FaeI CATG 1 cut(s) 231
FaiI YATR 2 cut(s) 39, 229
FatI CATG 1 cut(s) 227
FauI CCCGC 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 143
FokI GGATG 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 143
GlaI GCGC 1 cut(s) 141
GluI GCNGC 1 cut(s) 143
HapII CCGG 4 cut(s) 65, 212, 255, 349
HgaI GACGC 1 cut(s) 103
HhaI GCGC 1 cut(s) 142
Hin1I GRCGYC 1 cut(s) 95
Hin1II CATG 1 cut(s) 231
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HinfI GANTC 3 cut(s) 246, 306, 318
HpaII CCGG 4 cut(s) 65, 212, 255, 349
HphI GGTGA 3 cut(s) 110, 125, 211
Hpy188I TCNGA 2 cut(s) 104, 109
Hpy188III TCNNGA 3 cut(s) 9, 43, 152
Hpy99I CGWCG 3 cut(s) 33, 49, 220
HpyAV CCTTC 3 cut(s) 131, 138, 332
HpyCH4IV ACGT 1 cut(s) 218
HpyF3I CTNAG 1 cut(s) 285
HpySE526I ACGT 1 cut(s) 218
Hsp92I GRCGYC 1 cut(s) 95
Hsp92II CATG 1 cut(s) 231
HspAI GCGC 1 cut(s) 140
Kzo9I GATC 6 cut(s) 5, 99, 104, 109, 148, 201
LmnI GCTCC 2 cut(s) 51, 351
LpnPI CCDG 5 cut(s) 6, 78, 225, 268, 362
Lsp1109I GCAGC 1 cut(s) 129
MaeII ACGT 1 cut(s) 218
MalI GATC 6 cut(s) 7, 101, 106, 111, 150, 203
MboI GATC 6 cut(s) 5, 99, 104, 109, 148, 201
MboII GAAGA 1 cut(s) 103
MflI RGATCY 1 cut(s) 109
MluCI AATT 1 cut(s) 164
MnlI CCTC 6 cut(s) 42, 45, 169, 205, 235, 328
MseI TTAA 1 cut(s) 188
MspI CCGG 4 cut(s) 65, 212, 255, 349
NdeII GATC 6 cut(s) 5, 99, 104, 109, 148, 201
NlaIII CATG 1 cut(s) 231
NlaIV GGNNCC 2 cut(s) 274, 353
PcsI WCGNNNNNNNCGW 4 cut(s) 86, 95, 327, 352
PfeI GAWTC 3 cut(s) 246, 306, 318
PkrI GCNGC 1 cut(s) 144
PpuMI RGGWCCY 1 cut(s) 192
Psp5II RGGWCCY 1 cut(s) 192
PspN4I GGNNCC 2 cut(s) 274, 353
PspPI GGNCC 2 cut(s) 192, 273
PspPPI RGGWCCY 1 cut(s) 192
PsuI RGATCY 1 cut(s) 109
SaqAI TTAA 1 cut(s) 188
SatI GCNGC 1 cut(s) 143
Sau3AI GATC 6 cut(s) 5, 99, 104, 109, 148, 201
Sau96I GGNCC 2 cut(s) 192, 273
SetI ASST 7 cut(s) 37, 62, 123, 138, 197, 221, 295
SinI GGWCC 2 cut(s) 192, 273
Sse9I AATT 1 cut(s) 164
SsiI CCGC 4 cut(s) 83, 145, 233, 276
TaiI ACGT 1 cut(s) 221
TaqI TCGA 4 cut(s) 28, 44, 89, 281
TasI AATT 1 cut(s) 164
TfiI GAWTC 3 cut(s) 246, 306, 318
Tru1I TTAA 1 cut(s) 188
Tru9I TTAA 1 cut(s) 188
TscAI CASTG 1 cut(s) 186
TseI GCWGC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 113
TspGWI ACGGA 1 cut(s) 255
TspRI CASTG 1 cut(s) 186
VpaK11BI GGWCC 2 cut(s) 192, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.