RLG00000034821

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
55365266 .. 55365730
465 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034821

Sequence Viewer

Length: 330 bp
ATGCGATCTGGAAATAGAGGGTCGCCGGAGTTGAACGATGCGGCGGTATCGAAAACGCCGATAAGATCAGATCTACTTCACCTTCATCTTTCTCGCCTTGCGCTGCGGGATCGTGAGATAGCCGGATTGGTGTTAGAGGCAGTGGATTTAAGGACCTCAATGATCCATTTTCCGGCGACGTTATCCTCATGCGCGGAGATGATGAGAATCTACTCCGGCTCGTCTCCGTTCGGGTTCGCTTCGACTGAGAAAGGTAATGGAGATGGAATCGGCGACAGAATCGGTGATGACGTTGAGGAAGGGTGCCGCCGGAGCCGAGCAAGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.92

Weight (kDa)

6.83

Isoelectric Point (pI)

58.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019052)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 303
AccII CGCG 1 cut(s) 194
AciI CCGC 5 cut(s) 41, 44, 106, 194, 307
AclWI GGATC 2 cut(s) 117, 157
AfiI CCNNNNNNNGG 1 cut(s) 172
AgsI TTSAA 1 cut(s) 34
Alw26I GTCTC 1 cut(s) 228
AlwI GGATC 2 cut(s) 117, 157
ApeKI GCWGC 1 cut(s) 103
AspLEI GCGC 2 cut(s) 103, 194
AspS9I GGNCC 1 cut(s) 153
AsuHPI GGTGA 2 cut(s) 71, 296
AvaII GGWCC 1 cut(s) 153
BanI GGYRCC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 90
BccI CCATC 2 cut(s) 257, 318
BcoDI GTCTC 1 cut(s) 228
BglII AGATCT 1 cut(s) 70
BisI GCNGC 3 cut(s) 42, 104, 307
BlsI GCNGC 3 cut(s) 43, 105, 308
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 2 cut(s) 305, 314
BmsI GCATC 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 206
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse8I GATNNNNATC 1 cut(s) 206
BseJI GATNNNNATC 1 cut(s) 206
BseLI CCNNNNNNNGG 1 cut(s) 172
BseMII CTCAG 1 cut(s) 237
BseXI GCAGC 1 cut(s) 90
Bsh1236I CGCG 1 cut(s) 194
BshNI GGYRCC 1 cut(s) 303
BsiSI CCGG 5 cut(s) 26, 123, 173, 216, 310
BslI CCNNNNNNNGG 1 cut(s) 172
BsmAI GTCTC 1 cut(s) 228
BsmBI CGTCTC 1 cut(s) 228
Bsp143I GATC 5 cut(s) 5, 65, 70, 109, 162
BspACI CCGC 5 cut(s) 41, 44, 106, 194, 307
BspCNI CTCAG 1 cut(s) 238
BspFNI CGCG 1 cut(s) 194
BspLI GGNNCC 2 cut(s) 305, 314
BspPI GGATC 2 cut(s) 117, 157
BspT107I GGYRCC 1 cut(s) 303
BssMI GATC 5 cut(s) 5, 65, 70, 109, 162
BstDEI CTNAG 1 cut(s) 246
BstFNI CGCG 1 cut(s) 194
BstHHI GCGC 2 cut(s) 103, 194
BstKTI GATC 5 cut(s) 8, 68, 73, 112, 165
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 5 cut(s) 5, 65, 70, 109, 162
BstMWI GCNNNNNNNGC 1 cut(s) 312
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 147
CfoI GCGC 2 cut(s) 103, 194
Cfr13I GGNCC 1 cut(s) 153
CviAII CATG 1 cut(s) 189
CviJI RGCY 3 cut(s) 122, 219, 315
CviKI_1 RGCY 3 cut(s) 122, 219, 315
DdeI CTNAG 1 cut(s) 246
DpnI GATC 5 cut(s) 7, 67, 72, 111, 164
DpnII GATC 5 cut(s) 5, 65, 70, 109, 162
Eco47I GGWCC 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 153
Esp3I CGTCTC 1 cut(s) 228
FaeI CATG 1 cut(s) 192
FaiI YATR 1 cut(s) 190
FatI CATG 1 cut(s) 188
FauI CCCGC 1 cut(s) 99
Fnu4HI GCNGC 3 cut(s) 42, 104, 307
Fsp4HI GCNGC 3 cut(s) 42, 104, 307
GlaI GCGC 2 cut(s) 102, 193
GluI GCNGC 3 cut(s) 42, 104, 307
HapII CCGG 5 cut(s) 26, 123, 173, 216, 310
HhaI GCGC 2 cut(s) 103, 194
Hin1II CATG 1 cut(s) 192
Hin6I GCGC 2 cut(s) 101, 192
HinP1I GCGC 2 cut(s) 101, 192
HinfI GANTC 3 cut(s) 207, 267, 279
HpaII CCGG 5 cut(s) 26, 123, 173, 216, 310
HphI GGTGA 2 cut(s) 71, 296
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 2 cut(s) 9, 113
Hpy99I CGWCG 1 cut(s) 181
HpyAV CCTTC 2 cut(s) 92, 293
HpyCH4IV ACGT 2 cut(s) 179, 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 312
HpyF3I CTNAG 1 cut(s) 246
HpySE526I ACGT 2 cut(s) 179, 291
Hsp92II CATG 1 cut(s) 192
HspAI GCGC 2 cut(s) 101, 192
Kzo9I GATC 5 cut(s) 5, 65, 70, 109, 162
LmnI GCTCC 1 cut(s) 312
LpnPI CCDG 5 cut(s) 39, 136, 186, 229, 323
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 1 cut(s) 28
MaeII ACGT 2 cut(s) 179, 291
MalI GATC 5 cut(s) 7, 67, 72, 111, 164
MboI GATC 5 cut(s) 5, 65, 70, 109, 162
MflI RGATCY 1 cut(s) 70
MnlI CCTC 5 cut(s) 11, 130, 166, 196, 289
MseI TTAA 1 cut(s) 149
MspI CCGG 5 cut(s) 26, 123, 173, 216, 310
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 312
NdeII GATC 5 cut(s) 5, 65, 70, 109, 162
NlaIII CATG 1 cut(s) 192
NlaIV GGNNCC 2 cut(s) 305, 314
PcsI WCGNNNNNNNCGW 2 cut(s) 56, 288
PfeI GAWTC 3 cut(s) 207, 267, 279
PkrI GCNGC 3 cut(s) 43, 105, 308
PpuMI RGGWCCY 1 cut(s) 153
Psp5II RGGWCCY 1 cut(s) 153
PspN4I GGNNCC 2 cut(s) 305, 314
PspPI GGNCC 1 cut(s) 153
PspPPI RGGWCCY 1 cut(s) 153
PsuI RGATCY 1 cut(s) 70
SaqAI TTAA 1 cut(s) 149
SatI GCNGC 3 cut(s) 42, 104, 307
Sau3AI GATC 5 cut(s) 5, 65, 70, 109, 162
Sau96I GGNCC 1 cut(s) 153
SetI ASST 5 cut(s) 84, 158, 182, 256, 294
SfaNI GCATC 1 cut(s) 28
SinI GGWCC 1 cut(s) 153
SsiI CCGC 5 cut(s) 41, 44, 106, 194, 307
TaiI ACGT 2 cut(s) 182, 294
TaqI TCGA 2 cut(s) 50, 242
TauI GCSGC 2 cut(s) 44, 309
TfiI GAWTC 3 cut(s) 207, 267, 279
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TscAI CASTG 1 cut(s) 147
TseI GCWGC 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 74
TspGWI ACGGA 1 cut(s) 216
TspRI CASTG 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.