Rh2AG669900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0019052
Physical Location & Seq
Forward (+)
88393161 .. 88393484
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG669900.1

Sequence Viewer

Length: 324 bp
ATGAGGAGCGTAAGCTCGCCGGAGTTGAACGACGCGGCGGTATCGAAGACGCCGATCAGATCATATCTACTTCACCTTCATCCTTCTTGCCTTGCGCTGCGGGATCGTGAGATAGCCGGATTGGTGTTAGAGGCAGTGGATTTAAGGACCTCGATGATCCATTTTTTGGTGACGTTATCCTCATGCGCGGAGAAGATGAGAATCTACTCAGGCTCGTCTCCGTTCGGGTCTGCTTCGACTGAGAAAGGTAATGGAGATAGAATCGGCGACAGAATAGGCGATGGCATTAGGGAAGGGTGCCACCGGAGCCGAGCGAGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.74

Weight (kDa)

9.02

Isoelectric Point (pI)

59.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019052)

Species Orthologous Gene IDs
rosa_laevigata RLG00000005583 RLG00000026519 RLG00000030610 RLG00000034821 RLG00000036644
rosa_multiflora Rmu_sc0002251.1_g000006
rosa_samantha Rh2AG669900 Rh2DG493100 Rh3DG269500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 297
AccB7I CCANNNNNTGG 1 cut(s) 166
AccII CGCG 2 cut(s) 35, 188
AciI CCGC 4 cut(s) 35, 38, 100, 188
AclWI GGATC 2 cut(s) 111, 151
AcyI GRCGYC 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 166
AgsI TTSAA 1 cut(s) 28
AluBI AGCT 1 cut(s) 15
AluI AGCT 1 cut(s) 15
Alw26I GTCTC 1 cut(s) 222
AlwI GGATC 2 cut(s) 111, 151
ApeKI GCWGC 1 cut(s) 97
AspLEI GCGC 2 cut(s) 97, 188
AspS9I GGNCC 1 cut(s) 147
AsuHPI GGTGA 2 cut(s) 65, 181
AvaII GGWCC 1 cut(s) 147
BanI GGYRCC 1 cut(s) 297
BbsI GAAGAC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 84
BccI CCATC 2 cut(s) 275, 312
BcoDI GTCTC 1 cut(s) 222
BisI GCNGC 2 cut(s) 36, 98
BlsI GCNGC 2 cut(s) 37, 99
Bme18I GGWCC 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 147
BmiI GGNNCC 2 cut(s) 299, 308
BpiI GAAGAC 1 cut(s) 53
BsaBI GATNNNNATC 1 cut(s) 200
BsaHI GRCGYC 1 cut(s) 50
BsaWI WCCGGW 1 cut(s) 303
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse8I GATNNNNATC 1 cut(s) 200
BseGI GGATG 1 cut(s) 79
BseJI GATNNNNATC 1 cut(s) 200
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMII CTCAG 2 cut(s) 222, 231
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 84
Bsh1236I CGCG 2 cut(s) 35, 188
BshNI GGYRCC 1 cut(s) 297
BsiSI CCGG 3 cut(s) 20, 117, 304
BslI CCNNNNNNNGG 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 222
BsmBI CGTCTC 1 cut(s) 222
Bsp143I GATC 4 cut(s) 54, 59, 103, 156
BspACI CCGC 4 cut(s) 35, 38, 100, 188
BspCNI CTCAG 2 cut(s) 221, 232
BspFNI CGCG 2 cut(s) 35, 188
BspLI GGNNCC 2 cut(s) 299, 308
BspPI GGATC 2 cut(s) 111, 151
BspT107I GGYRCC 1 cut(s) 297
BssMI GATC 4 cut(s) 54, 59, 103, 156
BssNI GRCGYC 1 cut(s) 50
BstACI GRCGYC 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 17
BstDEI CTNAG 2 cut(s) 208, 240
BstF5I GGATG 1 cut(s) 79
BstFNI CGCG 2 cut(s) 35, 188
BstHHI GCGC 2 cut(s) 97, 188
BstKTI GATC 4 cut(s) 57, 62, 106, 159
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 4 cut(s) 54, 59, 103, 156
BstMWI GCNNNNNNNGC 1 cut(s) 306
BstUI CGCG 2 cut(s) 35, 188
BstV1I GCAGC 1 cut(s) 84
BstV2I GAAGAC 1 cut(s) 53
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 1 cut(s) 79
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 17
CfoI GCGC 2 cut(s) 97, 188
Cfr13I GGNCC 1 cut(s) 147
CseI GACGC 2 cut(s) 41, 58
CviAII CATG 1 cut(s) 183
CviJI RGCY 4 cut(s) 15, 116, 213, 309
CviKI_1 RGCY 4 cut(s) 15, 116, 213, 309
DdeI CTNAG 2 cut(s) 208, 240
DpnI GATC 4 cut(s) 56, 61, 105, 158
DpnII GATC 4 cut(s) 54, 59, 103, 156
Eco47I GGWCC 1 cut(s) 147
EcoO109I RGGNCCY 1 cut(s) 147
Esp3I CGTCTC 1 cut(s) 222
FaeI CATG 1 cut(s) 186
FaiI YATR 2 cut(s) 64, 184
FatI CATG 1 cut(s) 182
FauI CCCGC 1 cut(s) 93
Fnu4HI GCNGC 2 cut(s) 36, 98
FokI GGATG 1 cut(s) 66
Fsp4HI GCNGC 2 cut(s) 36, 98
GlaI GCGC 2 cut(s) 96, 187
GluI GCNGC 2 cut(s) 36, 98
HapII CCGG 3 cut(s) 20, 117, 304
HgaI GACGC 2 cut(s) 41, 58
HhaI GCGC 2 cut(s) 97, 188
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 1 cut(s) 186
Hin6I GCGC 2 cut(s) 95, 186
HinP1I GCGC 2 cut(s) 95, 186
HinfI GANTC 2 cut(s) 201, 261
HpaII CCGG 3 cut(s) 20, 117, 304
HphI GGTGA 2 cut(s) 65, 181
Hpy188I TCNGA 1 cut(s) 59
Hpy188III TCNNGA 1 cut(s) 107
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 3 cut(s) 86, 93, 287
HpyCH4IV ACGT 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 306
HpyF3I CTNAG 2 cut(s) 208, 240
HpySE526I ACGT 1 cut(s) 173
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 1 cut(s) 186
HspAI GCGC 2 cut(s) 95, 186
Kzo9I GATC 4 cut(s) 54, 59, 103, 156
LmnI GCTCC 2 cut(s) 6, 306
LpnPI CCDG 4 cut(s) 33, 130, 195, 317
Lsp1109I GCAGC 1 cut(s) 84
MaeII ACGT 1 cut(s) 173
MaeIII GTNAC 1 cut(s) 169
MalI GATC 4 cut(s) 56, 61, 105, 158
MboI GATC 4 cut(s) 54, 59, 103, 156
MboII GAAGA 2 cut(s) 58, 205
MnlI CCTC 3 cut(s) 124, 160, 190
MseI TTAA 1 cut(s) 143
MspI CCGG 3 cut(s) 20, 117, 304
MvnI CGCG 2 cut(s) 35, 188
MwoI GCNNNNNNNGC 1 cut(s) 306
NdeII GATC 4 cut(s) 54, 59, 103, 156
NlaIII CATG 1 cut(s) 186
NlaIV GGNNCC 2 cut(s) 299, 308
NmuCI GTSAC 1 cut(s) 169
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PfeI GAWTC 2 cut(s) 201, 261
PflMI CCANNNNNTGG 1 cut(s) 166
PkrI GCNGC 2 cut(s) 37, 99
PpuMI RGGWCCY 1 cut(s) 147
Psp5II RGGWCCY 1 cut(s) 147
PspN4I GGNNCC 2 cut(s) 299, 308
PspPI GGNCC 1 cut(s) 147
PspPPI RGGWCCY 1 cut(s) 147
SaqAI TTAA 1 cut(s) 143
SatI GCNGC 2 cut(s) 36, 98
Sau3AI GATC 4 cut(s) 54, 59, 103, 156
Sau96I GGNCC 1 cut(s) 147
SetI ASST 5 cut(s) 17, 78, 152, 176, 250
SinI GGWCC 1 cut(s) 147
SsiI CCGC 4 cut(s) 35, 38, 100, 188
TaiI ACGT 1 cut(s) 176
TaqI TCGA 3 cut(s) 44, 152, 236
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 2 cut(s) 201, 261
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TscAI CASTG 1 cut(s) 141
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 1 cut(s) 68
TspGWI ACGGA 1 cut(s) 210
TspRI CASTG 1 cut(s) 141
Van91I CCANNNNNTGG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.