Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002251.1

Orthogroup ID

OG0019052

Physical Location & Seq

Genomic Coordinates Reverse (-)

20775 .. 24996

Gene Structure 4222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002251.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

atggaacatcacattgccaaggaaagagctgcttgggaggataggtttaagaagttggaagaaaaggttgcgaggaaagaggttgacaatgattcattgaaaacgttgacaccgttgaatgatattggttctggacaaggcagttgttcccggcaaaatgacaagggtatgaaggttggtcaaactgagcttgctagaaatgtcaagaagaagttaatcttgaacaatgcttcacaagtggatgttgaagaacctctcatcaagactaaattctgggaagaagttctggttatgaccaatatggtcaagttggagtctaagctagcaataaattcattggataatgtagttgcttttggaaccatcgttgaagttgatattgaggccagcaaacaaacaatccatggtgttccaatgggagaggaaaatgtgcgcgtgtcagtcaccaaagctattgttgaagatgctttgctaccatttcctatcaaagatgagattgtcaaaatacgcgatgcgattggcacatgcgttgcttggcctaaaaacttgattataccccccacagttgagcaaaaggaaggagtaaagcgtaaaattgtgaagaagagaaatagagacatatatgatgatcatgatcatgatcatgatgaccttcaaaacctgccagccaagttgcctttacccctaaagatgttgtgccaatgggccaacacattctcaaaggatgggttcaccatccacaccactttgggagaagagcttttaggtcatccaaagaaggtagctatctttaggagggatgtgtatgccatgaccaacataaaggagatattgaacggctcattagtgatgtatatgaggtttgttttgaagaaaacaaagatgctggaaatgatcgccttcatagaccctgatcacacttgtgcacttgcatgtggaaatctaacagaacgttctctagctgttcggagcataaggtcgccggagttgaacaacgcggcggtatcgaagacgccgatcagatcagatctacttcaccttcatccttctcgccttgcgctgcgggatcatgagatagccgaattggtgttagaggcagtggatttaaggacctcgatgatccattttccggcgacgttatcctcatgcgcggagatgatgagaatctactccggctcgtctccgttcgggtccgcttcgactgagaaaggtaatggagatggaatcggcgacagaatcggcgatggcgttgaggaagggtgccgccggagccgagcgagatggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48 Transposase_24

Protein Analysis

428

Amino Acids

47.97

Weight (kDa)

7.65

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019052)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000005583 RLG00000026519 RLG00000030610 RLG00000034821 RLG00000036644
rosa_multiflora	Rmu_sc0002251.1_g000006
rosa_samantha	Rh2AG669900 Rh2DG493100 Rh3DG269500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	669
AccB1I	GGYRCC	1 cut(s)	1260
AccII	CGCG	4 cut(s)	435, 510, 998, 1151
AciI	CCGC	6 cut(s)	998, 1001, 1063, 1151, 1194, 1264
AclI	AACGTT	2 cut(s)	104, 952
AclWI	GGATC	2 cut(s)	1074, 1114
AcsI	RAATTY	2 cut(s)	269, 331
AcyI	GRCGYC	1 cut(s)	1013
AfiI	CCNNNNNNNGG	1 cut(s)	1129
AleI	CACNNNNGTG	1 cut(s)	921
AluBI	AGCT	7 cut(s)	29, 190, 322, 452, 760, 785, 962
AluI	AGCT	7 cut(s)	29, 190, 322, 452, 760, 785, 962
Alw21I	GWGCWC	1 cut(s)	928
Alw26I	GTCTC	2 cut(s)	609, 1185
Alw44I	GTGCAC	1 cut(s)	924
AlwI	GGATC	2 cut(s)	1074, 1114
AoxI	GGCC	3 cut(s)	384, 536, 705
ApaLI	GTGCAC	1 cut(s)	924
ApeKI	GCWGC	2 cut(s)	29, 1060
ApoI	RAATTY	2 cut(s)	269, 331
Asp700I	GAANNNNTTC	1 cut(s)	282
AspLEI	GCGC	3 cut(s)	435, 1060, 1151
AspS9I	GGNCC	3 cut(s)	705, 1110, 1191
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	3 cut(s)	436, 724, 1028
AsuNHI	GCTAGC	1 cut(s)	322
AvaII	GGWCC	2 cut(s)	1110, 1191
BaeGI	GKGCMC	1 cut(s)	928
BanI	GGYRCC	1 cut(s)	1260
BbsI	GAAGAC	1 cut(s)	1016
Bbv12I	GWGCWC	1 cut(s)	928
BbvI	GCAGC	2 cut(s)	16, 1047
BccI	CCATC	6 cut(s)	371, 719, 743, 1214, 1238, 1275
BceAI	ACGGC	1 cut(s)	853
BclI	TGATCA	4 cut(s)	628, 634, 640, 913
BcnI	CCSGG	1 cut(s)	151
BcoDI	GTCTC	2 cut(s)	609, 1185
BfaI	CTAG	3 cut(s)	195, 323, 959
BfuAI	ACCTGC	1 cut(s)	669
BglII	AGATCT	1 cut(s)	1027
BisI	GCNGC	4 cut(s)	30, 999, 1061, 1264
BlsI	GCNGC	4 cut(s)	31, 1000, 1062, 1265
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	2 cut(s)	1110, 1191
BmgT120I	GGNCC	3 cut(s)	705, 1110, 1191
BmiI	GGNNCC	4 cut(s)	361, 1192, 1262, 1271
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	3 cut(s)	454, 502, 873
BmtI	GCTAGC	1 cut(s)	326
BpiI	GAAGAC	1 cut(s)	1016
BpuMI	CCSGG	1 cut(s)	151
BsaBI	GATNNNNATC	3 cut(s)	633, 639, 1163
BsaHI	GRCGYC	1 cut(s)	1013
BsaJI	CCNNGG	2 cut(s)	18, 403
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	1 cut(s)	1129
Bse3DI	GCAATG	1 cut(s)	12
Bse8I	GATNNNNATC	3 cut(s)	633, 639, 1163
BseDI	CCNNGG	2 cut(s)	18, 403
BseGI	GGATG	6 cut(s)	247, 730, 735, 769, 805, 1042
BseJI	GATNNNNATC	3 cut(s)	633, 639, 1163
BseLI	CCNNNNNNNGG	1 cut(s)	1129
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	177, 1194
BseSI	GKGCMC	1 cut(s)	928
BseXI	GCAGC	2 cut(s)	16, 1047
Bsh1236I	CGCG	4 cut(s)	435, 510, 998, 1151
BshFI	GGCC	3 cut(s)	386, 538, 707
BshNI	GGYRCC	1 cut(s)	1260
BsiHKAI	GWGCWC	1 cut(s)	928
BsiSI	CCGG	5 cut(s)	151, 983, 1130, 1173, 1267
BslI	CCNNNNNNNGG	1 cut(s)	1129
BsmAI	GTCTC	2 cut(s)	609, 1185
BsmBI	CGTCTC	1 cut(s)	1185
BsnI	GGCC	3 cut(s)	386, 538, 707
Bsp1286I	GDGCHC	1 cut(s)	928
Bsp19I	CCATGG	1 cut(s)	403
BspACI	CCGC	6 cut(s)	998, 1001, 1063, 1151, 1194, 1264
BspANI	GGCC	3 cut(s)	386, 538, 707
BspCNI	CTCAG	2 cut(s)	178, 1195
BspFNI	CGCG	4 cut(s)	435, 510, 998, 1151
BspHI	TCATGA	4 cut(s)	631, 637, 643, 1069
BspLI	GGNNCC	4 cut(s)	361, 1192, 1262, 1271
BspMI	ACCTGC	1 cut(s)	669
BspOI	GCTAGC	1 cut(s)	326
BspPI	GGATC	2 cut(s)	1074, 1114
BspQI	GCTCTTC	1 cut(s)	750
BspT107I	GGYRCC	1 cut(s)	1260
BsrDI	GCAATG	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	18, 403
BssNI	GRCGYC	1 cut(s)	1013
BssT1I	CCWWGG	2 cut(s)	18, 403
Bst4CI	ACNGT	2 cut(s)	114, 565
Bst6I	CTCTTC	2 cut(s)	599, 750
BstACI	GRCGYC	1 cut(s)	1013
BstC8I	GCNNGC	4 cut(s)	192, 324, 388, 666
BstDEI	CTNAG	3 cut(s)	186, 318, 1203
BstDSI	CCRYGG	1 cut(s)	403
BstF5I	GGATG	6 cut(s)	247, 730, 735, 769, 805, 1042
BstFNI	CGCG	4 cut(s)	435, 510, 998, 1151
BstHHI	GCGC	3 cut(s)	435, 1060, 1151
BstMAI	GTCTC	2 cut(s)	609, 1185
BstMWI	GCNNNNNNNGC	1 cut(s)	1269
BstNSI	RCATGY	2 cut(s)	528, 936
BstSCI	CCNGG	1 cut(s)	149
BstSLI	GKGCMC	1 cut(s)	928
BstUI	CGCG	4 cut(s)	435, 510, 998, 1151
BstV1I	GCAGC	2 cut(s)	16, 1047
BstV2I	GAAGAC	1 cut(s)	1016
BstX2I	RGATCY	1 cut(s)	1027
BstYI	RGATCY	1 cut(s)	1027
BsuRI	GGCC	3 cut(s)	386, 538, 707
BtgI	CCRYGG	1 cut(s)	403
BtgZI	GCGATG	2 cut(s)	525, 1257
BtsCI	GGATG	6 cut(s)	247, 730, 735, 769, 805, 1042
BtsI	GCAGTG	1 cut(s)	1104
BtsIMutI	CAGTG	1 cut(s)	1104
BveI	ACCTGC	1 cut(s)	669
Cac8I	GCNNGC	4 cut(s)	192, 324, 388, 666
CciI	TCATGA	4 cut(s)	631, 637, 643, 1069
CfoI	GCGC	3 cut(s)	435, 1060, 1151
Cfr13I	GGNCC	3 cut(s)	705, 1110, 1191
CseI	GACGC	1 cut(s)	1021
CviAII	CATG	9 cut(s)	404, 525, 632, 638, 644, 811, 933, 1070, 1146
DdeI	CTNAG	3 cut(s)	186, 318, 1203
Eam1104I	CTCTTC	2 cut(s)	599, 750
EarI	CTCTTC	2 cut(s)	599, 750
Eco130I	CCWWGG	2 cut(s)	18, 403
Eco47I	GGWCC	2 cut(s)	1110, 1191
EcoO109I	RGGNCCY	1 cut(s)	1110
EcoT14I	CCWWGG	2 cut(s)	18, 403
ErhI	CCWWGG	2 cut(s)	18, 403
Esp3I	CGTCTC	1 cut(s)	1185
FaeI	CATG	9 cut(s)	407, 528, 635, 641, 647, 814, 936, 1073, 1149
FalI	AAGNNNNNCTT	4 cut(s)	16, 48, 203, 235
FatI	CATG	9 cut(s)	403, 524, 631, 637, 643, 810, 932, 1069, 1145
FauI	CCCGC	1 cut(s)	1056
FbaI	TGATCA	4 cut(s)	628, 634, 640, 913
Fnu4HI	GCNGC	4 cut(s)	30, 999, 1061, 1264
FokI	GGATG	6 cut(s)	254, 722, 737, 756, 812, 1029
Fsp4HI	GCNGC	4 cut(s)	30, 999, 1061, 1264
FspBI	CTAG	3 cut(s)	195, 323, 959
GlaI	GCGC	3 cut(s)	434, 1059, 1150
GluI	GCNGC	4 cut(s)	30, 999, 1061, 1264
HaeIII	GGCC	3 cut(s)	386, 538, 707
HapII	CCGG	5 cut(s)	151, 983, 1130, 1173, 1267
HgaI	GACGC	1 cut(s)	1021
HhaI	GCGC	3 cut(s)	435, 1060, 1151
Hin1I	GRCGYC	1 cut(s)	1013
Hin1II	CATG	9 cut(s)	407, 528, 635, 641, 647, 814, 936, 1073, 1149
Hin6I	GCGC	3 cut(s)	433, 1058, 1149
HinP1I	GCGC	3 cut(s)	433, 1058, 1149
HincII	GTYRAC	2 cut(s)	85, 108
HindII	GTYRAC	2 cut(s)	85, 108
HinfI	GANTC	5 cut(s)	92, 314, 1164, 1224, 1236
HpaII	CCGG	5 cut(s)	151, 983, 1130, 1173, 1267
HphI	GGTGA	3 cut(s)	436, 724, 1028
Hpy166II	GTNNAC	4 cut(s)	85, 108, 732, 926
Hpy188I	TCNGA	3 cut(s)	969, 1022, 1027
Hpy188III	TCNNGA	8 cut(s)	132, 205, 220, 262, 632, 638, 644, 1070
Hpy8I	GTNNAC	4 cut(s)	85, 108, 732, 926
Hpy99I	CGWCG	1 cut(s)	1138
HpyAV	CCTTC	8 cut(s)	166, 572, 662, 772, 910, 1049, 1056, 1250
HpyCH4III	ACNGT	2 cut(s)	114, 565
HpyCH4IV	ACGT	3 cut(s)	104, 952, 1136
HpyCH4V	TGCA	2 cut(s)	926, 932
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1269
HpyF3I	CTNAG	3 cut(s)	186, 318, 1203
HpySE526I	ACGT	3 cut(s)	104, 952, 1136
Hsp92I	GRCGYC	1 cut(s)	1013
Hsp92II	CATG	9 cut(s)	407, 528, 635, 641, 647, 814, 936, 1073, 1149
HspAI	GCGC	3 cut(s)	433, 1058, 1149
Ksp22I	TGATCA	4 cut(s)	628, 634, 640, 913
LguI	GCTCTTC	1 cut(s)	750
LmnI	GCTCC	2 cut(s)	969, 1269
Lsp1109I	GCAGC	2 cut(s)	16, 1047
LweI	GCATC	3 cut(s)	454, 502, 873
MaeI	CTAG	3 cut(s)	195, 323, 959
MaeII	ACGT	3 cut(s)	104, 952, 1136
MaeIII	GTNAC	1 cut(s)	442
MflI	RGATCY	1 cut(s)	1027
MhlI	GDGCHC	1 cut(s)	928
MluCI	AATT	4 cut(s)	269, 331, 594, 1082
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	2 cut(s)	36, 291
MroXI	GAANNNNTTC	1 cut(s)	282
MseI	TTAA	3 cut(s)	48, 215, 1106
MslI	CAYNNNNRTG	4 cut(s)	636, 642, 921, 931
MspI	CCGG	5 cut(s)	151, 983, 1130, 1173, 1267
MspR9I	CCNGG	1 cut(s)	151
MvnI	CGCG	4 cut(s)	435, 510, 998, 1151
MwoI	GCNNNNNNNGC	1 cut(s)	1269
NciI	CCSGG	1 cut(s)	151
NcoI	CCATGG	1 cut(s)	403
NheI	GCTAGC	1 cut(s)	322
NlaIII	CATG	9 cut(s)	407, 528, 635, 641, 647, 814, 936, 1073, 1149
NlaIV	GGNNCC	4 cut(s)	361, 1192, 1262, 1271
NmuCI	GTSAC	1 cut(s)	442
NspI	RCATGY	2 cut(s)	528, 936
OliI	CACNNNNGTG	1 cut(s)	921
PagI	TCATGA	4 cut(s)	631, 637, 643, 1069
PciSI	GCTCTTC	1 cut(s)	750
PcsI	WCGNNNNNNNCGW	3 cut(s)	110, 1013, 1245
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	4 cut(s)	92, 1164, 1224, 1236
PkrI	GCNGC	4 cut(s)	31, 1000, 1062, 1265
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PpuMI	RGGWCCY	1 cut(s)	1110
Psp1406I	AACGTT	2 cut(s)	104, 952
Psp5II	RGGWCCY	1 cut(s)	1110
PspN4I	GGNNCC	4 cut(s)	361, 1192, 1262, 1271
PspPI	GGNCC	3 cut(s)	705, 1110, 1191
PspPPI	RGGWCCY	1 cut(s)	1110
PsuI	RGATCY	1 cut(s)	1027
RseI	CAYNNNNRTG	4 cut(s)	636, 642, 921, 931
SapI	GCTCTTC	1 cut(s)	750
SaqAI	TTAA	3 cut(s)	48, 215, 1106
SatI	GCNGC	4 cut(s)	30, 999, 1061, 1264
Sau96I	GGNCC	3 cut(s)	705, 1110, 1191
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	928
SfaNI	GCATC	3 cut(s)	454, 502, 873
SinI	GGWCC	2 cut(s)	1110, 1191
SmiMI	CAYNNNNRTG	4 cut(s)	636, 642, 921, 931
Sse9I	AATT	4 cut(s)	269, 331, 594, 1082
SsiI	CCGC	6 cut(s)	998, 1001, 1063, 1151, 1194, 1264
SspMI	CTAG	3 cut(s)	195, 323, 959
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	2 cut(s)	18, 403
TaaI	ACNGT	2 cut(s)	114, 565
TaiI	ACGT	3 cut(s)	107, 955, 1139
TaqI	TCGA	3 cut(s)	1007, 1115, 1199
TasI	AATT	4 cut(s)	269, 331, 594, 1082
TauI	GCSGC	2 cut(s)	1001, 1266
TfiI	GAWTC	4 cut(s)	92, 1164, 1224, 1236
Tru1I	TTAA	3 cut(s)	48, 215, 1106
Tru9I	TTAA	3 cut(s)	48, 215, 1106
TscAI	CASTG	1 cut(s)	1104
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	2 cut(s)	29, 1060
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	5 cut(s)	84, 185, 324, 892, 1031
TspGWI	ACGGA	1 cut(s)	1173
TspRI	CASTG	1 cut(s)	1104
VneI	GTGCAC	1 cut(s)	924
VpaK11BI	GGWCC	2 cut(s)	1110, 1191
XapI	RAATTY	2 cut(s)	269, 331
XceI	RCATGY	2 cut(s)	528, 936
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	3 cut(s)	195, 323, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.