RLG00000026519

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0019052
Physical Location & Seq
Reverse (-)
3547790 .. 3548555
766 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026519

Sequence Viewer

Length: 366 bp
ATGAGAAACCAAATAGGCTTTGAATTGATTAAGCTTATCCAGAGGACATCGACGACCTTGTATCTCGAAGAGGAGCGTAAGGTCGCCGGAGTTGATCGAACGACGGGGCGGTATCGAAATCTACTTCACCTTCATCCTTCTCGCCTTGCACTGCGGGATCGTGAGATAGCCGAATTGGTGTTAGAGGCAGTGGATTTAAGGACCTTGATGATCCATTTTCCGGCGACGTTATCCTCATGCGCGGAGATGATGAGAATCTACTCCGGGTCGTCTCCGTTTGGGTCTGCTTCGACTAAGAAAGGTAATGGAGATGGAATCGGCGACAGAATCTGCGATGGCGTTGAGGAAGGGTGCCGCCGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.56

Weight (kDa)

8.55

Isoelectric Point (pI)

37.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019052)

Species Orthologous Gene IDs
rosa_laevigata RLG00000005583 RLG00000026519 RLG00000030610 RLG00000034821 RLG00000036644
rosa_multiflora Rmu_sc0002251.1_g000006
rosa_samantha Rh2AG669900 Rh2DG493100 Rh3DG269500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 351
AccII CGCG 1 cut(s) 242
AciI CCGC 4 cut(s) 109, 154, 242, 355
AclWI GGATC 2 cut(s) 165, 205
AfiI CCNNNNNNNGG 1 cut(s) 220
AgsI TTSAA 1 cut(s) 23
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
Alw26I GTCTC 1 cut(s) 276
AlwI GGATC 2 cut(s) 165, 205
AlwNI CAGNNNCTG 1 cut(s) 330
AspLEI GCGC 1 cut(s) 242
AspS9I GGNCC 1 cut(s) 201
AsuC2I CCSGG 1 cut(s) 265
AsuHPI GGTGA 1 cut(s) 119
AvaII GGWCC 1 cut(s) 201
BanI GGYRCC 1 cut(s) 351
BccI CCATC 2 cut(s) 305, 329
BcnI CCSGG 1 cut(s) 265
BcoDI GTCTC 1 cut(s) 276
BisI GCNGC 1 cut(s) 355
BlsI GCNGC 1 cut(s) 356
Bme1390I CCNGG 1 cut(s) 265
Bme18I GGWCC 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 353
BmrFI CCNGG 1 cut(s) 265
BpuMI CCSGG 1 cut(s) 265
BsaBI GATNNNNATC 1 cut(s) 254
Bsc4I CCNNNNNNNGG 1 cut(s) 220
Bse8I GATNNNNATC 1 cut(s) 254
BseGI GGATG 1 cut(s) 133
BseJI GATNNNNATC 1 cut(s) 254
BseLI CCNNNNNNNGG 1 cut(s) 220
BseRI GAGGAG 1 cut(s) 86
Bsh1236I CGCG 1 cut(s) 242
BshNI GGYRCC 1 cut(s) 351
BsiSI CCGG 4 cut(s) 87, 221, 264, 358
BslI CCNNNNNNNGG 1 cut(s) 220
BsmAI GTCTC 1 cut(s) 276
BsmBI CGTCTC 1 cut(s) 276
Bsp143I GATC 3 cut(s) 94, 157, 210
BspACI CCGC 4 cut(s) 109, 154, 242, 355
BspFNI CGCG 1 cut(s) 242
BspLI GGNNCC 1 cut(s) 353
BspPI GGATC 2 cut(s) 165, 205
BspT107I GGYRCC 1 cut(s) 351
BssMI GATC 3 cut(s) 94, 157, 210
Bst6I CTCTTC 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 133
BstFNI CGCG 1 cut(s) 242
BstHHI GCGC 1 cut(s) 242
BstKTI GATC 3 cut(s) 97, 160, 213
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 3 cut(s) 94, 157, 210
BstSCI CCNGG 1 cut(s) 263
BstUI CGCG 1 cut(s) 242
BtgZI GCGATG 1 cut(s) 348
BtsCI GGATG 1 cut(s) 133
BtsI GCAGTG 2 cut(s) 149, 195
BtsIMutI CAGTG 2 cut(s) 149, 195
CaiI CAGNNNCTG 1 cut(s) 330
CfoI GCGC 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 201
CviAII CATG 1 cut(s) 237
CviJI RGCY 3 cut(s) 18, 34, 170
CviKI_1 RGCY 3 cut(s) 18, 34, 170
DdeI CTNAG 1 cut(s) 294
DpnI GATC 3 cut(s) 96, 159, 212
DpnII GATC 3 cut(s) 94, 157, 210
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 201
EcoO109I RGGNCCY 1 cut(s) 201
Esp3I CGTCTC 1 cut(s) 276
FaeI CATG 1 cut(s) 240
FaiI YATR 1 cut(s) 238
FatI CATG 1 cut(s) 236
FauI CCCGC 1 cut(s) 147
Fnu4HI GCNGC 1 cut(s) 355
FokI GGATG 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 355
GlaI GCGC 1 cut(s) 241
GluI GCNGC 1 cut(s) 355
HapII CCGG 4 cut(s) 87, 221, 264, 358
HhaI GCGC 1 cut(s) 242
Hin1II CATG 1 cut(s) 240
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 3 cut(s) 255, 315, 327
HpaII CCGG 4 cut(s) 87, 221, 264, 358
HphI GGTGA 1 cut(s) 119
Hpy188III TCNNGA 3 cut(s) 40, 65, 161
Hpy99I CGWCG 3 cut(s) 55, 106, 229
HpyAV CCTTC 3 cut(s) 140, 147, 341
HpyCH4IV ACGT 1 cut(s) 227
HpyCH4V TGCA 1 cut(s) 149
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 1 cut(s) 227
Hsp92II CATG 1 cut(s) 240
HspAI GCGC 1 cut(s) 240
Kzo9I GATC 3 cut(s) 94, 157, 210
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 4 cut(s) 53, 100, 234, 277
MaeII ACGT 1 cut(s) 227
MalI GATC 3 cut(s) 96, 159, 212
MboI GATC 3 cut(s) 94, 157, 210
MboII GAAGA 1 cut(s) 80
MluCI AATT 2 cut(s) 23, 173
MnlI CCTC 5 cut(s) 36, 64, 178, 244, 337
MseI TTAA 2 cut(s) 30, 197
MspI CCGG 4 cut(s) 87, 221, 264, 358
MspR9I CCNGG 1 cut(s) 265
MvnI CGCG 1 cut(s) 242
NciI CCSGG 1 cut(s) 265
NdeII GATC 3 cut(s) 94, 157, 210
NlaIII CATG 1 cut(s) 240
NlaIV GGNNCC 1 cut(s) 353
PfeI GAWTC 3 cut(s) 255, 315, 327
PkrI GCNGC 1 cut(s) 356
PpuMI RGGWCCY 1 cut(s) 201
Psp5II RGGWCCY 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 353
PspPI GGNCC 1 cut(s) 201
PspPPI RGGWCCY 1 cut(s) 201
PstNI CAGNNNCTG 1 cut(s) 330
SaqAI TTAA 2 cut(s) 30, 197
SatI GCNGC 1 cut(s) 355
Sau3AI GATC 3 cut(s) 94, 157, 210
Sau96I GGNCC 1 cut(s) 201
ScrFI CCNGG 1 cut(s) 265
SetI ASST 7 cut(s) 36, 59, 84, 132, 206, 230, 304
SinI GGWCC 1 cut(s) 201
Sse9I AATT 2 cut(s) 23, 173
SsiI CCGC 4 cut(s) 109, 154, 242, 355
StyD4I CCNGG 1 cut(s) 263
TaiI ACGT 1 cut(s) 230
TaqI TCGA 5 cut(s) 50, 66, 97, 115, 290
TasI AATT 2 cut(s) 23, 173
TauI GCSGC 1 cut(s) 357
TfiI GAWTC 3 cut(s) 255, 315, 327
Tru1I TTAA 2 cut(s) 30, 197
Tru9I TTAA 2 cut(s) 30, 197
TscAI CASTG 2 cut(s) 156, 195
TspDTI ATGAA 1 cut(s) 122
TspGWI ACGGA 1 cut(s) 264
TspRI CASTG 2 cut(s) 156, 195
VpaK11BI GGWCC 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.