RLG00000036644

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0019052
Physical Location & Seq
Forward (+)
82902791 .. 82903222
432 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036644

Sequence Viewer

Length: 333 bp
ATGCTATCTGGAAACAGAAGGACATCGACTACCTCATATCTCGACGAGGAGCATAAGGTCACCGGAGTTGAACGACGCCGATCAGATCAGCTTCACCTTCATCCTTCTCGCCTTGCGCTGCGGGATCGTGAGATAGCCGGATTGGTGTTAGAGGCCGTGGATTTAAGGACCTCGATGAGCCATTTTCCGGCGACGTTGTCCTCGTGCTCGGAGATGGTGAGAATCTACTCCAGCTCGTCTCCGTTCGGGTCCGCTTCGACTGAGAAAGGTAATGGAGATGGAATCAGCAATGGCGTTGAGGAAGGGTGTCGCCGGAGCCGAGCTAGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.2

Weight (kDa)

8.8

Isoelectric Point (pI)

77.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019052)

Species Orthologous Gene IDs
rosa_laevigata RLG00000005583 RLG00000026519 RLG00000030610 RLG00000034821 RLG00000036644
rosa_multiflora Rmu_sc0002251.1_g000006
rosa_samantha Rh2AG669900 Rh2DG493100 Rh3DG269500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 121, 252
AclWI GGATC 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 76
AfiI CCNNNNNNNGG 1 cut(s) 187
AgsI TTSAA 1 cut(s) 71
AluBI AGCT 3 cut(s) 91, 234, 323
AluI AGCT 3 cut(s) 91, 234, 323
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 243
AlwI GGATC 1 cut(s) 132
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 1 cut(s) 118
AspLEI GCGC 1 cut(s) 118
AspS9I GGNCC 2 cut(s) 168, 249
AsuHPI GGTGA 3 cut(s) 52, 86, 229
AvaII GGWCC 2 cut(s) 168, 249
BauI CACGAG 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 105
BccI CCATC 3 cut(s) 208, 272, 321
BceAI ACGGC 1 cut(s) 140
BcoDI GTCTC 1 cut(s) 243
BfaI CTAG 1 cut(s) 324
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
Bme18I GGWCC 2 cut(s) 168, 249
BmgT120I GGNCC 2 cut(s) 168, 249
BmiI GGNNCC 2 cut(s) 250, 317
BpmI CTGGAG 1 cut(s) 214
BsaHI GRCGYC 1 cut(s) 76
BsaJI CCNNGG 1 cut(s) 156
BsaWI WCCGGW 1 cut(s) 62
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse3DI GCAATG 1 cut(s) 295
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMI GCAATG 1 cut(s) 295
BseMII CTCAG 1 cut(s) 252
BseRI GAGGAG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 105
BshFI GGCC 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 209
BsiSI CCGG 4 cut(s) 63, 138, 188, 313
BslI CCNNNNNNNGG 1 cut(s) 187
BsmAI GTCTC 1 cut(s) 243
BsmBI CGTCTC 1 cut(s) 243
BsnI GGCC 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 3 cut(s) 80, 85, 124
BspACI CCGC 2 cut(s) 121, 252
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 1 cut(s) 253
BspLI GGNNCC 2 cut(s) 250, 317
BspPI GGATC 1 cut(s) 132
BsrDI GCAATG 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 3 cut(s) 80, 85, 124
BssNI GRCGYC 1 cut(s) 76
BssSI CACGAG 1 cut(s) 202
Bst2BI CACGAG 1 cut(s) 202
BstACI GRCGYC 1 cut(s) 76
BstDEI CTNAG 1 cut(s) 261
BstDSI CCRYGG 1 cut(s) 156
BstEII GGTNACC 1 cut(s) 58
BstF5I GGATG 1 cut(s) 100
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 3 cut(s) 83, 88, 127
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 3 cut(s) 80, 85, 124
BstPI GGTNACC 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 105
BsuRI GGCC 1 cut(s) 155
BtgI CCRYGG 1 cut(s) 156
BtsCI GGATG 1 cut(s) 100
CfoI GCGC 1 cut(s) 118
Cfr13I GGNCC 2 cut(s) 168, 249
CseI GACGC 1 cut(s) 84
CviJI RGCY 7 cut(s) 91, 137, 155, 180, 234, 318, 323
CviKI_1 RGCY 7 cut(s) 91, 137, 155, 180, 234, 318, 323
DdeI CTNAG 1 cut(s) 261
DpnI GATC 3 cut(s) 82, 87, 126
DpnII GATC 3 cut(s) 80, 85, 124
Eco47I GGWCC 2 cut(s) 168, 249
Eco91I GGTNACC 1 cut(s) 58
EcoO109I RGGNCCY 1 cut(s) 168
EcoO65I GGTNACC 1 cut(s) 58
Esp3I CGTCTC 1 cut(s) 243
FaiI YATR 2 cut(s) 37, 54
FauI CCCGC 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 119
FokI GGATG 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 119
FspBI CTAG 1 cut(s) 324
GlaI GCGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 119
GsuI CTGGAG 1 cut(s) 214
HaeIII GGCC 1 cut(s) 155
HapII CCGG 4 cut(s) 63, 138, 188, 313
HgaI GACGC 1 cut(s) 84
HhaI GCGC 1 cut(s) 118
Hin1I GRCGYC 1 cut(s) 76
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HinfI GANTC 2 cut(s) 222, 282
HpaII CCGG 4 cut(s) 63, 138, 188, 313
HphI GGTGA 3 cut(s) 52, 86, 229
Hpy188I TCNGA 2 cut(s) 85, 211
Hpy188III TCNNGA 3 cut(s) 9, 41, 128
Hpy99I CGWCG 3 cut(s) 47, 78, 196
HpyAV CCTTC 4 cut(s) 12, 107, 114, 296
HpyCH4IV ACGT 1 cut(s) 194
HpyF3I CTNAG 1 cut(s) 261
HpySE526I ACGT 1 cut(s) 194
Hsp92I GRCGYC 1 cut(s) 76
HspAI GCGC 1 cut(s) 116
Kzo9I GATC 3 cut(s) 80, 85, 124
LmnI GCTCC 2 cut(s) 49, 315
LpnPI CCDG 5 cut(s) 76, 151, 201, 244, 326
Lsp1109I GCAGC 1 cut(s) 105
MaeI CTAG 1 cut(s) 324
MaeII ACGT 1 cut(s) 194
MaeIII GTNAC 1 cut(s) 58
MalI GATC 3 cut(s) 82, 87, 126
MboI GATC 3 cut(s) 80, 85, 124
MhlI GDGCHC 1 cut(s) 209
MnlI CCTC 6 cut(s) 40, 43, 145, 181, 211, 292
MseI TTAA 1 cut(s) 164
MspI CCGG 4 cut(s) 63, 138, 188, 313
NdeII GATC 3 cut(s) 80, 85, 124
NlaIV GGNNCC 2 cut(s) 250, 317
NmuCI GTSAC 1 cut(s) 58
PcsI WCGNNNNNNNCGW 2 cut(s) 200, 316
PfeI GAWTC 2 cut(s) 222, 282
PflFI GACNNNGTC 1 cut(s) 196
PkrI GCNGC 1 cut(s) 120
PpuMI RGGWCCY 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 168
PspEI GGTNACC 1 cut(s) 58
PspN4I GGNNCC 2 cut(s) 250, 317
PspPI GGNCC 2 cut(s) 168, 249
PspPPI RGGWCCY 1 cut(s) 168
PsyI GACNNNGTC 1 cut(s) 196
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 1 cut(s) 119
Sau3AI GATC 3 cut(s) 80, 85, 124
Sau96I GGNCC 2 cut(s) 168, 249
SduI GDGCHC 1 cut(s) 209
SetI ASST 9 cut(s) 35, 60, 93, 99, 173, 197, 236, 271, 325
SinI GGWCC 2 cut(s) 168, 249
SsiI CCGC 2 cut(s) 121, 252
SspMI CTAG 1 cut(s) 324
TaiI ACGT 1 cut(s) 197
TaqI TCGA 4 cut(s) 26, 42, 173, 257
TfiI GAWTC 2 cut(s) 222, 282
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 89
TspGWI ACGGA 1 cut(s) 231
Tth111I GACNNNGTC 1 cut(s) 196
VpaK11BI GGWCC 2 cut(s) 168, 249
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.