Rh2DG493100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0019052
Physical Location & Seq
Forward (+)
71353715 .. 71353990
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG493100.1

Sequence Viewer

Length: 276 bp
ATGCCGATCAGATCAGATCTACTTCACCTTCATCCTTCTCGCCTTGCGCTGCGGGATCGTGAGATAGCCAGATTGGTGTTAGAGGCAGTGGATTTAAGGACCTCGATGATCCATTTTCCGGCGACGTTATCCTCATGCGAGGAGATGATGAGAATCTACTCCGGCTCGTCTCCGTTCGGGTCCGCTTCGACTGAGAAAGGTAATGGAGATGGAATCGGCGACAGAATCGGCGATGGCGTTGAGGAAGGGTGCGGCCGGAGCCGAGCGAGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.0

Weight (kDa)

6.27

Isoelectric Point (pI)

62.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019052)

Species Orthologous Gene IDs
rosa_laevigata RLG00000005583 RLG00000026519 RLG00000030610 RLG00000034821 RLG00000036644
rosa_multiflora Rmu_sc0002251.1_g000006
rosa_samantha Rh2AG669900 Rh2DG493100 Rh3DG269500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 52, 183, 252
AclWI GGATC 2 cut(s) 63, 103
AcoI YGGCCR 1 cut(s) 253
AfiI CCNNNNNNNGG 1 cut(s) 118
Alw26I GTCTC 1 cut(s) 174
AlwI GGATC 2 cut(s) 63, 103
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 49
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 2 cut(s) 99, 180
AsuHPI GGTGA 1 cut(s) 17
AvaII GGWCC 2 cut(s) 99, 180
BbvI GCAGC 1 cut(s) 36
BccI CCATC 3 cut(s) 203, 227, 264
BcoDI GTCTC 1 cut(s) 174
BglII AGATCT 1 cut(s) 16
BisI GCNGC 2 cut(s) 50, 253
BlsI GCNGC 2 cut(s) 51, 254
Bme18I GGWCC 2 cut(s) 99, 180
BmgT120I GGNCC 2 cut(s) 99, 180
BmiI GGNNCC 2 cut(s) 181, 260
BsaBI GATNNNNATC 1 cut(s) 152
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse8I GATNNNNATC 1 cut(s) 152
BseGI GGATG 1 cut(s) 31
BseJI GATNNNNATC 1 cut(s) 152
BseLI CCNNNNNNNGG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 183
BseRI GAGGAG 1 cut(s) 155
BseX3I CGGCCG 1 cut(s) 253
BseXI GCAGC 1 cut(s) 36
Bsh1285I CGRYCG 1 cut(s) 256
BshFI GGCC 1 cut(s) 255
BsiEI CGRYCG 1 cut(s) 256
BsiSI CCGG 3 cut(s) 119, 162, 256
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 174
BsmBI CGTCTC 1 cut(s) 174
BsnI GGCC 1 cut(s) 255
Bsp143I GATC 5 cut(s) 6, 11, 16, 55, 108
BspACI CCGC 3 cut(s) 52, 183, 252
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 1 cut(s) 184
BspLI GGNNCC 2 cut(s) 181, 260
BspPI GGATC 2 cut(s) 63, 103
BssMI GATC 5 cut(s) 6, 11, 16, 55, 108
BstDEI CTNAG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 31
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 5 cut(s) 9, 14, 19, 58, 111
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 5 cut(s) 6, 11, 16, 55, 108
BstMCI CGRYCG 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BstZI CGGCCG 1 cut(s) 253
BsuRI GGCC 1 cut(s) 255
BtgZI GCGATG 1 cut(s) 246
BtsCI GGATG 1 cut(s) 31
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 93
CfoI GCGC 1 cut(s) 49
Cfr13I GGNCC 2 cut(s) 99, 180
CviAII CATG 1 cut(s) 135
CviJI RGCY 4 cut(s) 68, 165, 255, 261
CviKI_1 RGCY 4 cut(s) 68, 165, 255, 261
DdeI CTNAG 1 cut(s) 192
DpnI GATC 5 cut(s) 8, 13, 18, 57, 110
DpnII GATC 5 cut(s) 6, 11, 16, 55, 108
EaeI YGGCCR 1 cut(s) 253
EagI CGGCCG 1 cut(s) 253
EclXI CGGCCG 1 cut(s) 253
Eco47I GGWCC 2 cut(s) 99, 180
Eco52I CGGCCG 1 cut(s) 253
EcoO109I RGGNCCY 1 cut(s) 99
Esp3I CGTCTC 1 cut(s) 174
FaeI CATG 1 cut(s) 138
FaiI YATR 1 cut(s) 136
FatI CATG 1 cut(s) 134
FauI CCCGC 1 cut(s) 45
Fnu4HI GCNGC 2 cut(s) 50, 253
FokI GGATG 1 cut(s) 18
Fsp4HI GCNGC 2 cut(s) 50, 253
GlaI GCGC 1 cut(s) 48
GluI GCNGC 2 cut(s) 50, 253
HaeIII GGCC 1 cut(s) 255
HapII CCGG 3 cut(s) 119, 162, 256
HhaI GCGC 1 cut(s) 49
Hin1II CATG 1 cut(s) 138
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HinfI GANTC 3 cut(s) 153, 213, 225
HpaII CCGG 3 cut(s) 119, 162, 256
HphI GGTGA 1 cut(s) 17
Hpy188I TCNGA 2 cut(s) 11, 16
Hpy188III TCNNGA 1 cut(s) 59
Hpy99I CGWCG 1 cut(s) 127
HpyAV CCTTC 3 cut(s) 38, 45, 239
HpyCH4IV ACGT 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
HpyF3I CTNAG 1 cut(s) 192
HpySE526I ACGT 1 cut(s) 125
Hsp92II CATG 1 cut(s) 138
HspAI GCGC 1 cut(s) 47
Kzo9I GATC 5 cut(s) 6, 11, 16, 55, 108
LmnI GCTCC 1 cut(s) 258
LpnPI CCDG 4 cut(s) 82, 132, 175, 269
Lsp1109I GCAGC 1 cut(s) 36
MaeII ACGT 1 cut(s) 125
MalI GATC 5 cut(s) 8, 13, 18, 57, 110
MboI GATC 5 cut(s) 6, 11, 16, 55, 108
MflI RGATCY 1 cut(s) 16
MnlI CCTC 5 cut(s) 76, 112, 133, 142, 235
MseI TTAA 1 cut(s) 95
MspI CCGG 3 cut(s) 119, 162, 256
MwoI GCNNNNNNNGC 1 cut(s) 258
NdeII GATC 5 cut(s) 6, 11, 16, 55, 108
NlaIII CATG 1 cut(s) 138
NlaIV GGNNCC 2 cut(s) 181, 260
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PfeI GAWTC 3 cut(s) 153, 213, 225
PkrI GCNGC 2 cut(s) 51, 254
PpuMI RGGWCCY 1 cut(s) 99
Psp5II RGGWCCY 1 cut(s) 99
PspN4I GGNNCC 2 cut(s) 181, 260
PspPI GGNCC 2 cut(s) 99, 180
PspPPI RGGWCCY 1 cut(s) 99
PsuI RGATCY 1 cut(s) 16
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 2 cut(s) 50, 253
Sau3AI GATC 5 cut(s) 6, 11, 16, 55, 108
Sau96I GGNCC 2 cut(s) 99, 180
SetI ASST 4 cut(s) 30, 104, 128, 202
SinI GGWCC 2 cut(s) 99, 180
SsiI CCGC 3 cut(s) 52, 183, 252
TaiI ACGT 1 cut(s) 128
TaqI TCGA 2 cut(s) 104, 188
TauI GCSGC 1 cut(s) 255
TfiI GAWTC 3 cut(s) 153, 213, 225
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TscAI CASTG 1 cut(s) 93
TseI GCWGC 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 20
TspGWI ACGGA 1 cut(s) 162
TspRI CASTG 1 cut(s) 93
VpaK11BI GGWCC 2 cut(s) 99, 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.