Rh3DG269500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0019052
Physical Location & Seq
Reverse (-)
26968026 .. 26968349
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG269500.1

Sequence Viewer

Length: 324 bp
ATGAGGAGCGTAAGGTCGCCGGAGTTGAACAACCCGGCGATATCGAAGATGCCGATCAGATCAGATCTACTTCCCCTTCATATTTCTCTCCTTGCGCTGCGGGATCGTGAGATAGCTGGATTGGTGTTAGAGGCAGTGGATTTAAGGACCTGGATGATCCATTTTCCGGCGACGTTATCCTCATCCGCGGAGATGATGAGAATCTACTCTGGCTCATCTCCGTTAGGGTCCGCTTCGACTGAGAAAGGTAATGGAGATGGAATCGGCGACAGAATCGGCGATGGCGTTGAGGAAGGGTGCCACCGGAGCCGAGCGAGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.69

Weight (kDa)

6.83

Isoelectric Point (pI)

72.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019052)

Species Orthologous Gene IDs
rosa_laevigata RLG00000005583 RLG00000026519 RLG00000030610 RLG00000034821 RLG00000036644
rosa_multiflora Rmu_sc0002251.1_g000006
rosa_samantha Rh2AG669900 Rh2DG493100 Rh3DG269500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 297
AccII CGCG 1 cut(s) 188
AciI CCGC 4 cut(s) 100, 186, 188, 231
AclWI GGATC 2 cut(s) 111, 151
AfiI CCNNNNNNNGG 1 cut(s) 166
AgsI TTSAA 1 cut(s) 28
AjnI CCWGG 1 cut(s) 149
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
AlwI GGATC 2 cut(s) 111, 151
ApeKI GCWGC 1 cut(s) 97
AspLEI GCGC 1 cut(s) 97
AspS9I GGNCC 2 cut(s) 147, 228
AsuC2I CCSGG 1 cut(s) 35
AvaII GGWCC 2 cut(s) 147, 228
BanI GGYRCC 1 cut(s) 297
BbvI GCAGC 1 cut(s) 84
BccI CCATC 3 cut(s) 251, 275, 312
BciT130I CCWGG 1 cut(s) 151
BcnI CCSGG 1 cut(s) 35
BglII AGATCT 1 cut(s) 64
BisI GCNGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 99
Bme1390I CCNGG 2 cut(s) 35, 151
Bme18I GGWCC 2 cut(s) 147, 228
BmgT120I GGNCC 2 cut(s) 147, 228
BmiI GGNNCC 3 cut(s) 229, 299, 308
BmrFI CCNGG 2 cut(s) 35, 151
BmsI GCATC 1 cut(s) 39
BpuMI CCSGG 1 cut(s) 35
BsaBI GATNNNNATC 2 cut(s) 53, 200
BsaJI CCNNGG 1 cut(s) 186
BsaWI WCCGGW 1 cut(s) 303
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse8I GATNNNNATC 2 cut(s) 53, 200
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 2 cut(s) 159, 182
BseJI GATNNNNATC 2 cut(s) 53, 200
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 231
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 84
Bsh1236I CGCG 1 cut(s) 188
BshNI GGYRCC 1 cut(s) 297
BsiSI CCGG 4 cut(s) 20, 35, 167, 304
BslI CCNNNNNNNGG 1 cut(s) 166
Bsp143I GATC 5 cut(s) 54, 59, 64, 103, 156
BspACI CCGC 4 cut(s) 100, 186, 188, 231
BspCNI CTCAG 1 cut(s) 232
BspFNI CGCG 1 cut(s) 188
BspLI GGNNCC 3 cut(s) 229, 299, 308
BspPI GGATC 2 cut(s) 111, 151
BspT107I GGYRCC 1 cut(s) 297
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 5 cut(s) 54, 59, 64, 103, 156
Bst2UI CCWGG 1 cut(s) 151
BstDEI CTNAG 1 cut(s) 240
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 2 cut(s) 159, 182
BstFNI CGCG 1 cut(s) 188
BstHHI GCGC 1 cut(s) 97
BstKTI GATC 5 cut(s) 57, 62, 67, 106, 159
BstMBI GATC 5 cut(s) 54, 59, 64, 103, 156
BstMWI GCNNNNNNNGC 1 cut(s) 306
BstNI CCWGG 1 cut(s) 151
BstSCI CCNGG 2 cut(s) 33, 149
BstUI CGCG 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 186
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 2 cut(s) 159, 182
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
CfoI GCGC 1 cut(s) 97
Cfr13I GGNCC 2 cut(s) 147, 228
Cfr42I CCGCGG 1 cut(s) 189
CviJI RGCY 3 cut(s) 116, 213, 309
CviKI_1 RGCY 3 cut(s) 116, 213, 309
DdeI CTNAG 1 cut(s) 240
DpnI GATC 5 cut(s) 56, 61, 66, 105, 158
DpnII GATC 5 cut(s) 54, 59, 64, 103, 156
Eco32I GATATC 1 cut(s) 42
Eco47I GGWCC 2 cut(s) 147, 228
EcoO109I RGGNCCY 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 149
EcoRV GATATC 1 cut(s) 42
FaiI YATR 1 cut(s) 81
FauI CCCGC 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 98
FokI GGATG 2 cut(s) 166, 169
Fsp4HI GCNGC 1 cut(s) 98
GlaI GCGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 98
HapII CCGG 4 cut(s) 20, 35, 167, 304
HhaI GCGC 1 cut(s) 97
Hin6I GCGC 1 cut(s) 95
HinP1I GCGC 1 cut(s) 95
HinfI GANTC 3 cut(s) 201, 261, 273
HpaII CCGG 4 cut(s) 20, 35, 167, 304
Hpy188I TCNGA 2 cut(s) 59, 64
Hpy188III TCNNGA 1 cut(s) 107
Hpy99I CGWCG 1 cut(s) 175
HpyAV CCTTC 2 cut(s) 86, 287
HpyCH4IV ACGT 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 306
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 1 cut(s) 173
HspAI GCGC 1 cut(s) 95
KspI CCGCGG 1 cut(s) 189
Kzo9I GATC 5 cut(s) 54, 59, 64, 103, 156
LmnI GCTCC 2 cut(s) 6, 306
LpnPI CCDG 8 cut(s) 33, 48, 102, 136, 163, 180, 195, 317
Lsp1109I GCAGC 1 cut(s) 84
LweI GCATC 1 cut(s) 39
MaeII ACGT 1 cut(s) 173
MalI GATC 5 cut(s) 56, 61, 66, 105, 158
MboI GATC 5 cut(s) 54, 59, 64, 103, 156
MboII GAAGA 1 cut(s) 58
MflI RGATCY 1 cut(s) 64
MnlI CCTC 3 cut(s) 124, 190, 283
MseI TTAA 1 cut(s) 143
MspA1I CMGCKG 1 cut(s) 188
MspI CCGG 4 cut(s) 20, 35, 167, 304
MspR9I CCNGG 2 cut(s) 35, 151
MvaI CCWGG 1 cut(s) 151
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 1 cut(s) 306
NciI CCSGG 1 cut(s) 35
NdeII GATC 5 cut(s) 54, 59, 64, 103, 156
NlaIV GGNNCC 3 cut(s) 229, 299, 308
PcsI WCGNNNNNNNCGW 2 cut(s) 50, 282
PfeI GAWTC 3 cut(s) 201, 261, 273
PkrI GCNGC 1 cut(s) 99
PpuMI RGGWCCY 1 cut(s) 147
Psp5II RGGWCCY 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 149
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 3 cut(s) 229, 299, 308
PspPI GGNCC 2 cut(s) 147, 228
PspPPI RGGWCCY 1 cut(s) 147
PsuI RGATCY 1 cut(s) 64
SacII CCGCGG 1 cut(s) 189
SaqAI TTAA 1 cut(s) 143
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 5 cut(s) 54, 59, 64, 103, 156
Sau96I GGNCC 2 cut(s) 147, 228
ScrFI CCNGG 2 cut(s) 35, 151
SetI ASST 5 cut(s) 17, 118, 152, 176, 250
SfaNI GCATC 1 cut(s) 39
Sfr303I CCGCGG 1 cut(s) 189
SgrBI CCGCGG 1 cut(s) 189
SinI GGWCC 2 cut(s) 147, 228
SsiI CCGC 4 cut(s) 100, 186, 188, 231
StyD4I CCNGG 2 cut(s) 33, 149
TaiI ACGT 1 cut(s) 176
TaqI TCGA 2 cut(s) 44, 236
TfiI GAWTC 3 cut(s) 201, 261, 273
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TscAI CASTG 1 cut(s) 141
TseI GCWGC 1 cut(s) 97
TspDTI ATGAA 1 cut(s) 68
TspGWI ACGGA 1 cut(s) 210
TspRI CASTG 1 cut(s) 141
VpaK11BI GGWCC 2 cut(s) 147, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.