RLG00000007544

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018615
Physical Location & Seq
Reverse (-)
17985637 .. 17987059
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007544

Sequence Viewer

Length: 522 bp
ATGGAGTCCTTATCGGGTTTTGGCCTGTACTTAGTTGTTCTTGTCGCTTCCACAGTAGCAGTGGCGGTGCGGTGGATGGCTGCGATCTTCTACAATTTCAAGGACGCTCGACAATGGCAACCTCGTCTAGAGGCTGGGCATCATCGACGTCTTTTAGTGGGTTTTCTTTCTGCCACTCATGGTCTTCGGAGGTCATCTGTGGTGGTGTTCTGGCTGATAGTGGCACTGGCTGGGTATCCGCTTCGGTTTCGGCTGTTTGGGGATTATGGGATGTTGGGGATTCTAGCTTCGGGTTTTGTTTTTGTAGGTTGGCCCGACCGCTTACTTCGACTTCTCCATGCTGCTGGTGGACTGGCTATCAGGGATCAAGCCGACGGTGGTGCTGGGTCGGTGGTATGGGATCTCGCCTGCTGCGATGCAGTAGGATCCGGATCTGGGATCTGGGTGACCTTTGCAAATGGGTCCAGGTCTGGGATCCGAGTGGAGACTAGAATCCCCAACGCCGAAAGAAAGGAAACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

18.85

Weight (kDa)

10.01

Isoelectric Point (pI)

35.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 151
AccIII TCCGGA 1 cut(s) 428
AciI CCGC 4 cut(s) 65, 70, 239, 319
AclWI GGATC 8 cut(s) 372, 408, 420, 433, 439, 446, 469, 482
AcyI GRCGYC 1 cut(s) 148
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 2 cut(s) 435, 471
AgsI TTSAA 1 cut(s) 100
AjnI CCWGG 1 cut(s) 464
AluBI AGCT 1 cut(s) 287
AluI AGCT 1 cut(s) 287
Alw26I GTCTC 1 cut(s) 479
AlwI GGATC 8 cut(s) 372, 408, 420, 433, 439, 446, 469, 482
Aor13HI TCCGGA 1 cut(s) 428
AoxI GGCC 2 cut(s) 22, 311
ApeKI GCWGC 3 cut(s) 80, 341, 411
AspS9I GGNCC 2 cut(s) 312, 462
AsuHPI GGTGA 1 cut(s) 457
AvaII GGWCC 1 cut(s) 462
BamHI GGATCC 2 cut(s) 425, 474
BbsI GAAGAC 1 cut(s) 176
BbvI GCAGC 3 cut(s) 67, 328, 398
BccI CCATC 1 cut(s) 70
BcgI CGANNNNNNTGC 2 cut(s) 362, 396
BciT130I CCWGG 1 cut(s) 466
BciVI GTATCC 1 cut(s) 246
BcoDI GTCTC 1 cut(s) 479
BfaI CTAG 3 cut(s) 128, 284, 489
BfuI GTATCC 1 cut(s) 246
BisI GCNGC 3 cut(s) 81, 342, 412
BlsI GCNGC 3 cut(s) 82, 343, 413
Bme1390I CCNGG 1 cut(s) 466
Bme18I GGWCC 1 cut(s) 462
BmgT120I GGNCC 2 cut(s) 312, 462
BmiI GGNNCC 3 cut(s) 427, 463, 476
BmrFI CCNGG 1 cut(s) 466
BmsI GCATC 2 cut(s) 148, 406
BpiI GAAGAC 1 cut(s) 176
BsaBI GATNNNNATC 1 cut(s) 430
BsaHI GRCGYC 1 cut(s) 148
BsaWI WCCGGW 1 cut(s) 428
Bsc4I CCNNNNNNNGG 2 cut(s) 435, 471
Bse1I ACTGG 2 cut(s) 231, 357
Bse8I GATNNNNATC 1 cut(s) 430
BseAI TCCGGA 1 cut(s) 428
BseBI CCWGG 1 cut(s) 466
BseGI GGATG 2 cut(s) 81, 276
BseJI GATNNNNATC 1 cut(s) 430
BseLI CCNNNNNNNGG 2 cut(s) 435, 471
BseNI ACTGG 2 cut(s) 231, 357
BseXI GCAGC 3 cut(s) 67, 328, 398
BseYI CCCAGC 3 cut(s) 134, 230, 383
Bsh1285I CGRYCG 1 cut(s) 319
BshFI GGCC 2 cut(s) 24, 313
BsiEI CGRYCG 1 cut(s) 319
BsiSI CCGG 1 cut(s) 429
BslI CCNNNNNNNGG 2 cut(s) 435, 471
BsmAI GTCTC 1 cut(s) 479
BsnI GGCC 2 cut(s) 24, 313
Bsp13I TCCGGA 1 cut(s) 428
Bsp143I GATC 7 cut(s) 84, 364, 400, 425, 431, 438, 474
BspACI CCGC 4 cut(s) 65, 70, 239, 319
BspANI GGCC 2 cut(s) 24, 313
BspEI TCCGGA 1 cut(s) 428
BspLI GGNNCC 3 cut(s) 427, 463, 476
BspPI GGATC 8 cut(s) 372, 408, 420, 433, 439, 446, 469, 482
BsrI ACTGG 2 cut(s) 231, 357
BssMI GATC 7 cut(s) 84, 364, 400, 425, 431, 438, 474
BssNI GRCGYC 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 466
Bst4CI ACNGT 2 cut(s) 55, 377
BstACI GRCGYC 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 409
BstDEI CTNAG 1 cut(s) 31
BstEII GGTNACC 1 cut(s) 445
BstF5I GGATG 2 cut(s) 81, 276
BstKTI GATC 7 cut(s) 87, 367, 403, 428, 434, 441, 477
BstMAI GTCTC 1 cut(s) 479
BstMBI GATC 7 cut(s) 84, 364, 400, 425, 431, 438, 474
BstMCI CGRYCG 1 cut(s) 319
BstNI CCWGG 1 cut(s) 466
BstPI GGTNACC 1 cut(s) 445
BstSCI CCNGG 1 cut(s) 464
BstV1I GCAGC 3 cut(s) 67, 328, 398
BstV2I GAAGAC 1 cut(s) 176
BstX2I RGATCY 5 cut(s) 400, 425, 431, 438, 474
BstXI CCANNNNNNTGG 1 cut(s) 344
BstYI RGATCY 5 cut(s) 400, 425, 431, 438, 474
BsuI GTATCC 1 cut(s) 246
BsuRI GGCC 2 cut(s) 24, 313
BtgZI GCGATG 1 cut(s) 429
BtsCI GGATG 2 cut(s) 81, 276
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 2 cut(s) 66, 224
Cac8I GCNNGC 1 cut(s) 409
Cfr13I GGNCC 2 cut(s) 312, 462
CseI GACGC 1 cut(s) 113
Csp6I GTAC 1 cut(s) 28
CviAII CATG 2 cut(s) 179, 338
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 1 cut(s) 31
DpnI GATC 7 cut(s) 86, 366, 402, 427, 433, 440, 476
DpnII GATC 7 cut(s) 84, 364, 400, 425, 431, 438, 474
Eco47I GGWCC 1 cut(s) 462
Eco91I GGTNACC 1 cut(s) 445
EcoO65I GGTNACC 1 cut(s) 445
EcoRII CCWGG 1 cut(s) 464
FaeI CATG 2 cut(s) 182, 341
FaiI YATR 4 cut(s) 180, 267, 339, 397
FatI CATG 2 cut(s) 178, 337
Fnu4HI GCNGC 3 cut(s) 81, 342, 412
FokI GGATG 2 cut(s) 88, 283
Fsp4HI GCNGC 3 cut(s) 81, 342, 412
FspBI CTAG 3 cut(s) 128, 284, 489
GluI GCNGC 3 cut(s) 81, 342, 412
GsaI CCCAGC 3 cut(s) 138, 234, 387
HaeIII GGCC 2 cut(s) 24, 313
HapII CCGG 1 cut(s) 429
HgaI GACGC 1 cut(s) 113
Hin1I GRCGYC 1 cut(s) 148
Hin1II CATG 2 cut(s) 182, 341
HinfI GANTC 3 cut(s) 5, 280, 492
HpaII CCGG 1 cut(s) 429
HphI GGTGA 1 cut(s) 457
Hpy166II GTNNAC 1 cut(s) 350
Hpy188I TCNGA 2 cut(s) 189, 479
Hpy188III TCNNGA 2 cut(s) 128, 429
Hpy8I GTNNAC 1 cut(s) 350
Hpy99I CGWCG 2 cut(s) 150, 377
HpyCH4III ACNGT 2 cut(s) 55, 377
HpyCH4IV ACGT 2 cut(s) 148, 518
HpyCH4V TGCA 2 cut(s) 419, 455
HpyF3I CTNAG 1 cut(s) 31
HpySE526I ACGT 2 cut(s) 148, 518
Hsp92I GRCGYC 1 cut(s) 148
Hsp92II CATG 2 cut(s) 182, 341
Kpn2I TCCGGA 1 cut(s) 428
Kzo9I GATC 7 cut(s) 84, 364, 400, 425, 431, 438, 474
Lsp1109I GCAGC 3 cut(s) 67, 328, 398
LweI GCATC 2 cut(s) 148, 406
MaeI CTAG 3 cut(s) 128, 284, 489
MaeII ACGT 2 cut(s) 148, 518
MaeIII GTNAC 1 cut(s) 445
MalI GATC 7 cut(s) 86, 366, 402, 427, 433, 440, 476
MboI GATC 7 cut(s) 84, 364, 400, 425, 431, 438, 474
MboII GAAGA 2 cut(s) 79, 176
MflI RGATCY 5 cut(s) 400, 425, 431, 438, 474
MluCI AATT 1 cut(s) 94
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 3 cut(s) 124, 132, 183
MroI TCCGGA 1 cut(s) 428
MspI CCGG 1 cut(s) 429
MspR9I CCNGG 1 cut(s) 466
MvaI CCWGG 1 cut(s) 466
NdeII GATC 7 cut(s) 84, 364, 400, 425, 431, 438, 474
NlaIII CATG 2 cut(s) 182, 341
NlaIV GGNNCC 3 cut(s) 427, 463, 476
NmuCI GTSAC 1 cut(s) 445
PcsI WCGNNNNNNNCGW 1 cut(s) 411
PfeI GAWTC 2 cut(s) 280, 492
PkrI GCNGC 3 cut(s) 82, 343, 413
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 464
PspEI GGTNACC 1 cut(s) 445
PspFI CCCAGC 3 cut(s) 134, 230, 383
PspGI CCWGG 1 cut(s) 464
PspN4I GGNNCC 3 cut(s) 427, 463, 476
PspPI GGNCC 2 cut(s) 312, 462
PsuI RGATCY 5 cut(s) 400, 425, 431, 438, 474
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
SatI GCNGC 3 cut(s) 81, 342, 412
Sau3AI GATC 7 cut(s) 84, 364, 400, 425, 431, 438, 474
Sau96I GGNCC 2 cut(s) 312, 462
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 466
SetI ASST 8 cut(s) 124, 151, 194, 289, 310, 452, 470, 521
SfaNI GCATC 2 cut(s) 148, 406
SinI GGWCC 1 cut(s) 462
Sse9I AATT 1 cut(s) 94
SsiI CCGC 4 cut(s) 65, 70, 239, 319
SspMI CTAG 3 cut(s) 128, 284, 489
StyD4I CCNGG 1 cut(s) 464
TaaI ACNGT 2 cut(s) 55, 377
TaiI ACGT 2 cut(s) 151, 521
TaqI TCGA 3 cut(s) 109, 145, 328
TasI AATT 1 cut(s) 94
TatI WGTACW 1 cut(s) 27
TfiI GAWTC 2 cut(s) 280, 492
TscAI CASTG 2 cut(s) 66, 231
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 3 cut(s) 80, 341, 411
Tsp45I GTSAC 1 cut(s) 445
TspRI CASTG 2 cut(s) 66, 231
VpaK11BI GGWCC 1 cut(s) 462
XbaI TCTAGA 1 cut(s) 127
XcmI CCANNNNNNNNNTGG 2 cut(s) 58, 344
XspI CTAG 3 cut(s) 128, 284, 489
ZraI GACGTC 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.