Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8280179.1

Orthogroup ID

OG0018615

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 408

Gene Structure 407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8280179.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 308 bp

atgacctccggagcaccgctgcccgtggcggttatgtctcggattgagtcgttgggattcgtggtgagccatgggtatgggttgacgaagacggcgggggtggtggtgttgtgcacgtggaagcccgggtggaataagttgtcagcgacggagagggcgaggctgaagtcgaggcagggagtggtggatctagatacagagcagggaggtggttttctgaggcgggtttatgatgttgggttatctgaaagagtgaaagacccagaagacacagccagttgcatgaaagacagttggttttccaccga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

102

Amino Acids

11.09

Weight (kDa)

8.68

Isoelectric Point (pI)

57.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018615)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0019731 RchiOBHm_Chr6g0282121
rosa_laevigata	RLG00000007544 RLG00000036224
rosa_multiflora	Rmu_co8280179.1_g000001 Rmu_sc0000400.1_g000017 Rmu_sc0001814.1_g000027 Rmu_sc0015120.1_g000002 Rmu_sc0022726.1_g000009
rosa_samantha	Rh7CG372600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	8
AciI	CCGC	4 cut(s)	17, 29, 95, 223
AclWI	GGATC	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	185
AcvI	CACGTG	1 cut(s)	117
Alw21I	GWGCWC	2 cut(s)	16, 116
Alw26I	GTCTC	1 cut(s)	42
Alw44I	GTGCAC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	195
Ama87I	CYCGRG	1 cut(s)	125
Aor13HI	TCCGGA	1 cut(s)	8
ApaLI	GTGCAC	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	19
AsuC2I	CCSGG	2 cut(s)	126, 127
AsuHPI	GGTGA	1 cut(s)	76
AvaI	CYCGRG	1 cut(s)	125
BaeGI	GKGCMC	1 cut(s)	116
BbrPI	CACGTG	1 cut(s)	117
BbsI	GAAGAC	2 cut(s)	95, 273
Bbv12I	GWGCWC	2 cut(s)	16, 116
BbvI	GCAGC	1 cut(s)	6
BceAI	ACGGC	1 cut(s)	108
BcnI	CCSGG	2 cut(s)	126, 127
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	1 cut(s)	191
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
Bme1390I	CCNGG	2 cut(s)	126, 127
BmeT110I	CYCGRG	1 cut(s)	125
BmrFI	CCNGG	2 cut(s)	126, 127
BpiI	GAAGAC	2 cut(s)	95, 273
BpuMI	CCSGG	2 cut(s)	126, 127
BsaAI	YACGTR	1 cut(s)	117
BsaJI	CCNNGG	3 cut(s)	24, 70, 125
BsaWI	WCCGGW	1 cut(s)	8
Bse1I	ACTGG	1 cut(s)	276
BseAI	TCCGGA	1 cut(s)	8
BseDI	CCNNGG	3 cut(s)	24, 70, 125
BseMII	CTCAG	1 cut(s)	209
BseNI	ACTGG	1 cut(s)	276
BseSI	GKGCMC	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	6
BsiHKAI	GWGCWC	2 cut(s)	16, 116
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	2 cut(s)	9, 126
BsmAI	GTCTC	1 cut(s)	42
BsoBI	CYCGRG	1 cut(s)	125
Bsp1286I	GDGCHC	2 cut(s)	16, 116
Bsp13I	TCCGGA	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	187
Bsp19I	CCATGG	1 cut(s)	70
BspACI	CCGC	4 cut(s)	17, 29, 95, 223
BspCNI	CTCAG	1 cut(s)	210
BspEI	TCCGGA	1 cut(s)	8
BspPI	GGATC	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	276
BssECI	CCNNGG	3 cut(s)	24, 70, 125
BssMI	GATC	1 cut(s)	187
BssT1I	CCWWGG	1 cut(s)	70
Bst4CI	ACNGT	1 cut(s)	293
BstBAI	YACGTR	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	218
BstDSI	CCRYGG	2 cut(s)	24, 70
BstKTI	GATC	1 cut(s)	190
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	1 cut(s)	187
BstSCI	CCNGG	2 cut(s)	124, 125
BstSLI	GKGCMC	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	6
BstV2I	GAAGAC	2 cut(s)	95, 273
BstX2I	RGATCY	1 cut(s)	187
BstXI	CCANNNNNNTGG	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	187
BtgI	CCRYGG	2 cut(s)	24, 70
Cfr9I	CCCGGG	1 cut(s)	125
CviAII	CATG	2 cut(s)	71, 283
CviJI	RGCY	4 cut(s)	69, 124, 163, 275
CviKI_1	RGCY	4 cut(s)	69, 124, 163, 275
DdeI	CTNAG	1 cut(s)	218
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	185
Eco72I	CACGTG	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	70
FaeI	CATG	2 cut(s)	74, 286
FaiI	YATR	5 cut(s)	35, 72, 78, 231, 284
FatI	CATG	2 cut(s)	70, 282
FauI	CCCGC	2 cut(s)	88, 216
Fnu4HI	GCNGC	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	20
FspBI	CTAG	1 cut(s)	191
GluI	GCNGC	1 cut(s)	20
HapII	CCGG	2 cut(s)	9, 126
Hin1II	CATG	2 cut(s)	74, 286
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HinfI	GANTC	2 cut(s)	47, 57
HpaII	CCGG	2 cut(s)	9, 126
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	2 cut(s)	84, 114
Hpy188I	TCNGA	3 cut(s)	42, 219, 247
Hpy188III	TCNNGA	2 cut(s)	9, 191
Hpy8I	GTNNAC	2 cut(s)	84, 114
Hpy99I	CGWCG	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	2 cut(s)	114, 282
HpyF3I	CTNAG	1 cut(s)	218
HpySE526I	ACGT	1 cut(s)	116
Hsp92II	CATG	2 cut(s)	74, 286
Kpn2I	TCCGGA	1 cut(s)	8
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	6 cut(s)	22, 139, 161, 188, 276, 289
Lsp1109I	GCAGC	1 cut(s)	6
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	116
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	2 cut(s)	100, 278
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	2 cut(s)	16, 116
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	6 cut(s)	16, 147, 153, 165, 200, 213
MroI	TCCGGA	1 cut(s)	8
MslI	CAYNNNNRTG	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	2 cut(s)	9, 126
MspR9I	CCNGG	2 cut(s)	126, 127
NciI	CCSGG	2 cut(s)	126, 127
NcoI	CCATGG	1 cut(s)	70
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	2 cut(s)	74, 286
PcsI	WCGNNNNNNNCGW	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	21
PleI	GAGTC	1 cut(s)	55
PmaCI	CACGTG	1 cut(s)	117
PmlI	CACGTG	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	55
Ppu21I	YACGTR	1 cut(s)	117
PspCI	CACGTG	1 cut(s)	117
PsuI	RGATCY	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	75
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	1 cut(s)	187
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	2 cut(s)	126, 127
SduI	GDGCHC	2 cut(s)	16, 116
SetI	ASST	3 cut(s)	8, 119, 211
SmaI	CCCGGG	1 cut(s)	127
SmiMI	CAYNNNNRTG	1 cut(s)	75
SsiI	CCGC	4 cut(s)	17, 29, 95, 223
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	2 cut(s)	124, 125
StyI	CCWWGG	1 cut(s)	70
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	57
TseI	GCWGC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	299
TspGWI	ACGGA	1 cut(s)	164
TspMI	CCCGGG	1 cut(s)	125
VneI	GTGCAC	1 cut(s)	112
XbaI	TCTAGA	1 cut(s)	190
XmaI	CCCGGG	1 cut(s)	125
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.