Rmu_sc0015120.1_g000002

Acyl-activating enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015120.1
OG0018615
Physical Location & Seq
Forward (+)
1987 .. 2493
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015120.1_g000002.1.cds

Sequence Viewer

Length: 408 bp
atgacctccggagcaccgctgcccgtggcggttatgtctcggattgagtcgttgggattcgtggtgagccatgggtatgggttgacgaagacggcgggggtggtggtgttgtgcacgtggaagcccgggtggaataagttgtcggcgacggagagggcgaggcagggagtggtggatctagatacagagcagggaggtggttttctgaggcgggtttatgatgttgggttatctgaaagagtgaaagacccagaagacacagccagttgcatgaaagacagttggttttccaccgacgaattgttgaaactgattggtaccgaaactatacagaaccgatcggtttcgagaccaatcggtatccctgataaaattccgacatcccgaaccgacccgagccaattataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AMP-binding AMP-binding_C

Protein Analysis

135

Amino Acids

14.68

Weight (kDa)

6.57

Isoelectric Point (pI)

52.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 406
Acc65I GGTACC 1 cut(s) 317
AccB1I GGYRCC 1 cut(s) 317
AccIII TCCGGA 1 cut(s) 8
AciI CCGC 4 cut(s) 17, 29, 95, 211
AclWI GGATC 1 cut(s) 183
AcsI RAATTY 1 cut(s) 372
AcvI CACGTG 1 cut(s) 117
AfaI GTAC 1 cut(s) 319
AgsI TTSAA 1 cut(s) 307
Alw21I GWGCWC 2 cut(s) 16, 116
Alw26I GTCTC 2 cut(s) 42, 343
Alw44I GTGCAC 1 cut(s) 112
AlwI GGATC 1 cut(s) 183
Ama87I CYCGRG 2 cut(s) 125, 394
Aor13HI TCCGGA 1 cut(s) 8
ApaLI GTGCAC 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 19
ApoI RAATTY 1 cut(s) 372
Asp718I GGTACC 1 cut(s) 317
AsuC2I CCSGG 2 cut(s) 126, 127
AsuHPI GGTGA 1 cut(s) 76
AvaI CYCGRG 2 cut(s) 125, 394
BaeGI GKGCMC 1 cut(s) 116
BanI GGYRCC 1 cut(s) 317
BbrPI CACGTG 1 cut(s) 117
BbsI GAAGAC 2 cut(s) 95, 261
Bbv12I GWGCWC 2 cut(s) 16, 116
BbvI GCAGC 1 cut(s) 6
BceAI ACGGC 1 cut(s) 108
BciVI GTATCC 1 cut(s) 371
BcnI CCSGG 2 cut(s) 126, 127
BcoDI GTCTC 2 cut(s) 42, 343
BfaI CTAG 1 cut(s) 179
BfuI GTATCC 1 cut(s) 371
BisI GCNGC 1 cut(s) 20
BlsI GCNGC 1 cut(s) 21
Bme1390I CCNGG 2 cut(s) 126, 127
BmeT110I CYCGRG 2 cut(s) 125, 394
BmiI GGNNCC 1 cut(s) 319
BmrFI CCNGG 2 cut(s) 126, 127
BpiI GAAGAC 2 cut(s) 95, 261
BpuMI CCSGG 2 cut(s) 126, 127
BsaAI YACGTR 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 343
BsaJI CCNNGG 3 cut(s) 24, 70, 125
BsaWI WCCGGW 1 cut(s) 8
Bse1I ACTGG 1 cut(s) 264
BseAI TCCGGA 1 cut(s) 8
BseDI CCNNGG 3 cut(s) 24, 70, 125
BseGI GGATG 1 cut(s) 380
BseMII CTCAG 1 cut(s) 197
BseNI ACTGG 1 cut(s) 264
BseSI GKGCMC 1 cut(s) 116
BseXI GCAGC 1 cut(s) 6
Bsh1285I CGRYCG 1 cut(s) 341
BshNI GGYRCC 1 cut(s) 317
BsiEI CGRYCG 1 cut(s) 341
BsiHKAI GWGCWC 2 cut(s) 16, 116
BsiHKCI CYCGRG 2 cut(s) 125, 394
BsiSI CCGG 2 cut(s) 9, 126
BsmAI GTCTC 2 cut(s) 42, 343
Bso31I GGTCTC 1 cut(s) 343
BsoBI CYCGRG 2 cut(s) 125, 394
Bsp1286I GDGCHC 2 cut(s) 16, 116
Bsp13I TCCGGA 1 cut(s) 8
Bsp143I GATC 2 cut(s) 175, 338
Bsp19I CCATGG 1 cut(s) 70
BspACI CCGC 4 cut(s) 17, 29, 95, 211
BspCNI CTCAG 1 cut(s) 198
BspEI TCCGGA 1 cut(s) 8
BspLI GGNNCC 1 cut(s) 319
BspPI GGATC 1 cut(s) 183
BspT107I GGYRCC 1 cut(s) 317
BspTNI GGTCTC 1 cut(s) 343
BsrI ACTGG 1 cut(s) 264
BssECI CCNNGG 3 cut(s) 24, 70, 125
BssMI GATC 2 cut(s) 175, 338
BssT1I CCWWGG 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 281
BstBAI YACGTR 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 206
BstDSI CCRYGG 2 cut(s) 24, 70
BstF5I GGATG 1 cut(s) 380
BstKTI GATC 2 cut(s) 178, 341
BstMAI GTCTC 2 cut(s) 42, 343
BstMBI GATC 2 cut(s) 175, 338
BstMCI CGRYCG 1 cut(s) 341
BstSCI CCNGG 2 cut(s) 124, 125
BstSLI GKGCMC 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 6
BstV2I GAAGAC 2 cut(s) 95, 261
BstX2I RGATCY 1 cut(s) 175
BstXI CCANNNNNNTGG 1 cut(s) 77
BstYI RGATCY 1 cut(s) 175
BsuI GTATCC 1 cut(s) 371
BtgI CCRYGG 2 cut(s) 24, 70
BtsCI GGATG 1 cut(s) 380
Cfr9I CCCGGG 1 cut(s) 125
Csp6I GTAC 1 cut(s) 318
CviAII CATG 2 cut(s) 71, 271
CviJI RGCY 4 cut(s) 69, 124, 263, 399
CviKI_1 RGCY 4 cut(s) 69, 124, 263, 399
CviQI GTAC 1 cut(s) 318
DdeI CTNAG 1 cut(s) 206
DpnI GATC 2 cut(s) 177, 340
DpnII GATC 2 cut(s) 175, 338
Eco130I CCWWGG 1 cut(s) 70
Eco31I GGTCTC 1 cut(s) 343
Eco72I CACGTG 1 cut(s) 117
Eco88I CYCGRG 2 cut(s) 125, 394
EcoT14I CCWWGG 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 2 cut(s) 74, 274
FaiI YATR 7 cut(s) 35, 72, 78, 219, 272, 329, 406
FatI CATG 2 cut(s) 70, 270
FauI CCCGC 2 cut(s) 88, 204
Fnu4HI GCNGC 1 cut(s) 20
FokI GGATG 1 cut(s) 367
Fsp4HI GCNGC 1 cut(s) 20
FspBI CTAG 1 cut(s) 179
GluI GCNGC 1 cut(s) 20
HapII CCGG 2 cut(s) 9, 126
Hin1II CATG 2 cut(s) 74, 274
HincII GTYRAC 1 cut(s) 84
HindII GTYRAC 1 cut(s) 84
HinfI GANTC 2 cut(s) 47, 57
HpaII CCGG 2 cut(s) 9, 126
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 2 cut(s) 84, 114
Hpy188I TCNGA 4 cut(s) 42, 207, 235, 378
Hpy188III TCNNGA 4 cut(s) 9, 179, 348, 384
Hpy8I GTNNAC 2 cut(s) 84, 114
Hpy99I CGWCG 2 cut(s) 151, 299
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 2 cut(s) 114, 270
HpyF3I CTNAG 1 cut(s) 206
HpySE526I ACGT 1 cut(s) 116
Hsp92II CATG 2 cut(s) 74, 274
Kpn2I TCCGGA 1 cut(s) 8
KpnI GGTACC 1 cut(s) 321
Kzo9I GATC 2 cut(s) 175, 338
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 7 cut(s) 22, 139, 149, 176, 264, 277, 378
Lsp1109I GCAGC 1 cut(s) 6
MaeI CTAG 1 cut(s) 179
MaeII ACGT 1 cut(s) 116
MalI GATC 2 cut(s) 177, 340
MboI GATC 2 cut(s) 175, 338
MboII GAAGA 2 cut(s) 100, 266
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 2 cut(s) 16, 116
MluCI AATT 3 cut(s) 299, 372, 401
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 401
MnlI CCTC 5 cut(s) 16, 147, 153, 188, 201
MroI TCCGGA 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 75
MspA1I CMGCKG 1 cut(s) 19
MspI CCGG 2 cut(s) 9, 126
MspR9I CCNGG 2 cut(s) 126, 127
NciI CCSGG 2 cut(s) 126, 127
NcoI CCATGG 1 cut(s) 70
NdeII GATC 2 cut(s) 175, 338
NlaIII CATG 2 cut(s) 74, 274
NlaIV GGNNCC 1 cut(s) 319
PcsI WCGNNNNNNNCGW 1 cut(s) 155
PfeI GAWTC 1 cut(s) 57
PkrI GCNGC 1 cut(s) 21
Ple19I CGATCG 1 cut(s) 341
PleI GAGTC 1 cut(s) 55
PmaCI CACGTG 1 cut(s) 117
PmlI CACGTG 1 cut(s) 117
PpsI GAGTC 1 cut(s) 55
Ppu21I YACGTR 1 cut(s) 117
PsiI TTATAA 1 cut(s) 406
PspCI CACGTG 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 319
PsuI RGATCY 1 cut(s) 175
PvuI CGATCG 1 cut(s) 341
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
RseI CAYNNNNRTG 1 cut(s) 75
SatI GCNGC 1 cut(s) 20
Sau3AI GATC 2 cut(s) 175, 338
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 2 cut(s) 126, 127
SduI GDGCHC 2 cut(s) 16, 116
SetI ASST 3 cut(s) 8, 119, 199
SmaI CCCGGG 1 cut(s) 127
SmiMI CAYNNNNRTG 1 cut(s) 75
Sse9I AATT 3 cut(s) 299, 372, 401
SsiI CCGC 4 cut(s) 17, 29, 95, 211
SspMI CTAG 1 cut(s) 179
StyD4I CCNGG 2 cut(s) 124, 125
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 281
TaiI ACGT 1 cut(s) 119
TaqI TCGA 1 cut(s) 347
TasI AATT 3 cut(s) 299, 372, 401
TfiI GAWTC 1 cut(s) 57
TseI GCWGC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 287
TspGWI ACGGA 1 cut(s) 164
TspMI CCCGGG 1 cut(s) 125
VneI GTGCAC 1 cut(s) 112
XapI RAATTY 1 cut(s) 372
XbaI TCTAGA 1 cut(s) 178
XmaI CCCGGG 1 cut(s) 125
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.