Rmu_sc0001814.1_g000027

Acyl-activating enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001814.1
OG0018615
Physical Location & Seq
Forward (+)
150015 .. 150464
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001814.1_g000027.1.cds

Sequence Viewer

Length: 450 bp
atgaccgccggagctccgctgcccgtggtggttctgtcttggattgagtcgttgggattcgtggtgagccatgggtacgggttgacggagacggcgggggtggtggtgtcgtgcgcgtggaagcccgggtggaataagttgccagcacttggggatgaaagatggagatggagattaagaaggttggtcttaggcttcagatccaactccaaaaacaaaacaaaaaaaaagctacctgaatcgaatgctcttcagatcatttcctccttgaagcagagaaacaaaagtgatgagcacaccaggctccacttgcgcttcccattccttaggctcatcatcctccatcaacaccacagattaagtcctcccactcaccaacgccggcatcccttcgcctctcgaaagcgccttcaacctgccgtccatctgctttcagaagcgggtctgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AMP-binding AMP-binding_C

Protein Analysis

149

Amino Acids

17.07

Weight (kDa)

11.6

Isoelectric Point (pI)

76.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 424
AccB7I CCANNNNNTGG 1 cut(s) 149
AccII CGCG 1 cut(s) 116
AciI CCGC 4 cut(s) 6, 17, 95, 440
AclWI GGATC 1 cut(s) 195
AcuI CTGAAG 2 cut(s) 181, 236
AfaI GTAC 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 2 cut(s) 271, 413
AjnI CCWGG 1 cut(s) 299
AluBI AGCT 2 cut(s) 14, 232
AluI AGCT 2 cut(s) 14, 232
Alw21I GWGCWC 2 cut(s) 16, 297
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 1 cut(s) 195
Ama87I CYCGRG 1 cut(s) 125
ApeKI GCWGC 1 cut(s) 19
AspLEI GCGC 3 cut(s) 116, 315, 408
AsuC2I CCSGG 2 cut(s) 126, 127
AsuHPI GGTGA 2 cut(s) 76, 365
AvaI CYCGRG 1 cut(s) 125
AxyI CCTNAGG 1 cut(s) 326
BanII GRGCYC 1 cut(s) 16
Bbv12I GWGCWC 2 cut(s) 16, 297
BbvI GCAGC 1 cut(s) 6
BccI CCATC 4 cut(s) 156, 162, 351, 432
BceAI ACGGC 2 cut(s) 108, 404
BciT130I CCWGG 1 cut(s) 301
BcnI CCSGG 2 cut(s) 126, 127
BcoDI GTCTC 1 cut(s) 83
BfoI RGCGCY 1 cut(s) 409
BfuAI ACCTGC 1 cut(s) 424
BisI GCNGC 1 cut(s) 20
BlsI GCNGC 1 cut(s) 21
Bme1390I CCNGG 3 cut(s) 126, 127, 301
BmeT110I CYCGRG 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 305
BmrFI CCNGG 3 cut(s) 126, 127, 301
BmsI GCATC 1 cut(s) 394
BpuMI CCSGG 2 cut(s) 126, 127
BsaJI CCNNGG 3 cut(s) 24, 70, 125
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse118I RCCGGY 1 cut(s) 381
Bse21I CCTNAGG 1 cut(s) 326
BseBI CCWGG 1 cut(s) 301
BseDI CCNNGG 3 cut(s) 24, 70, 125
BseGI GGATG 3 cut(s) 160, 336, 385
BseLI CCNNNNNNNGG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 6
Bsh1236I CGCG 1 cut(s) 116
BsiHKAI GWGCWC 2 cut(s) 16, 297
BsiHKCI CYCGRG 1 cut(s) 125
BsiSI CCGG 3 cut(s) 9, 126, 382
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 83
BsmBI CGTCTC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 250
BsoBI CYCGRG 1 cut(s) 125
Bsp1286I GDGCHC 2 cut(s) 16, 297
Bsp143I GATC 2 cut(s) 200, 255
Bsp19I CCATGG 1 cut(s) 70
BspACI CCGC 4 cut(s) 6, 17, 95, 440
BspFNI CGCG 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 305
BspMI ACCTGC 1 cut(s) 424
BspPI GGATC 1 cut(s) 195
BspQI GCTCTTC 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 381
BssAI RCCGGY 1 cut(s) 381
BssECI CCNNGG 3 cut(s) 24, 70, 125
BssMI GATC 2 cut(s) 200, 255
BssT1I CCWWGG 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 301
Bst6I CTCTTC 1 cut(s) 255
BstC8I GCNNGC 2 cut(s) 144, 383
BstDEI CTNAG 2 cut(s) 190, 326
BstDSI CCRYGG 2 cut(s) 24, 70
BstF5I GGATG 3 cut(s) 160, 336, 385
BstFNI CGCG 1 cut(s) 116
BstH2I RGCGCY 1 cut(s) 409
BstHHI GCGC 3 cut(s) 116, 315, 408
BstKTI GATC 2 cut(s) 203, 258
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 2 cut(s) 200, 255
BstMWI GCNNNNNNNGC 2 cut(s) 301, 310
BstNI CCWGG 1 cut(s) 301
BstSCI CCNGG 3 cut(s) 124, 125, 299
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 6
BstX2I RGATCY 1 cut(s) 200
BstYI RGATCY 1 cut(s) 200
Bsu36I CCTNAGG 1 cut(s) 326
BtgI CCRYGG 2 cut(s) 24, 70
BtsCI GGATG 3 cut(s) 160, 336, 385
BveI ACCTGC 1 cut(s) 424
Cac8I GCNNGC 2 cut(s) 144, 383
CfoI GCGC 3 cut(s) 116, 315, 408
Cfr10I RCCGGY 1 cut(s) 381
Cfr9I CCCGGG 1 cut(s) 125
Csp6I GTAC 1 cut(s) 76
CviAII CATG 1 cut(s) 71
CviJI RGCY 7 cut(s) 14, 69, 124, 195, 232, 304, 331
CviKI_1 RGCY 7 cut(s) 14, 69, 124, 195, 232, 304, 331
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 2 cut(s) 190, 326
DpnI GATC 2 cut(s) 202, 257
DpnII GATC 2 cut(s) 200, 255
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Ecl136II GAGCTC 1 cut(s) 14
Eco130I CCWWGG 1 cut(s) 70
Eco24I GRGCYC 1 cut(s) 16
Eco53kI GAGCTC 1 cut(s) 14
Eco57I CTGAAG 2 cut(s) 181, 236
Eco81I CCTNAGG 1 cut(s) 326
Eco88I CYCGRG 1 cut(s) 125
EcoICRI GAGCTC 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 299
EcoT14I CCWWGG 1 cut(s) 70
EcoT38I GRGCYC 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 70
Esp3I CGTCTC 1 cut(s) 83
FaeI CATG 1 cut(s) 74
FaiI YATR 1 cut(s) 72
FatI CATG 1 cut(s) 70
FauI CCCGC 2 cut(s) 88, 433
Fnu4HI GCNGC 1 cut(s) 20
FokI GGATG 3 cut(s) 167, 323, 372
FriOI GRGCYC 1 cut(s) 16
Fsp4HI GCNGC 1 cut(s) 20
GlaI GCGC 3 cut(s) 115, 314, 407
GluI GCNGC 1 cut(s) 20
HaeII RGCGCY 1 cut(s) 409
HapII CCGG 3 cut(s) 9, 126, 382
HhaI GCGC 3 cut(s) 116, 315, 408
Hin1II CATG 1 cut(s) 74
Hin6I GCGC 3 cut(s) 114, 313, 406
HinP1I GCGC 3 cut(s) 114, 313, 406
HincII GTYRAC 1 cut(s) 84
HindII GTYRAC 1 cut(s) 84
HinfI GANTC 3 cut(s) 47, 57, 239
HpaII CCGG 3 cut(s) 9, 126, 382
HphI GGTGA 2 cut(s) 76, 365
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 3 cut(s) 200, 255, 436
Hpy188III TCNNGA 1 cut(s) 399
Hpy8I GTNNAC 1 cut(s) 84
HpyAV CCTTC 3 cut(s) 174, 400, 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 301, 310
HpyF3I CTNAG 2 cut(s) 190, 326
Hsp92II CATG 1 cut(s) 74
HspAI GCGC 3 cut(s) 114, 313, 406
KroI GCCGGC 1 cut(s) 381
KroNI GCCGGC 1 cut(s) 383
Kzo9I GATC 2 cut(s) 200, 255
LguI GCTCTTC 1 cut(s) 255
LmnI GCTCC 3 cut(s) 11, 19, 309
LpnPI CCDG 8 cut(s) 22, 139, 156, 249, 286, 313, 395, 429
Lsp1109I GCAGC 1 cut(s) 6
LweI GCATC 1 cut(s) 394
MalI GATC 2 cut(s) 202, 257
MboI GATC 2 cut(s) 200, 255
MboII GAAGA 1 cut(s) 242
MflI RGATCY 1 cut(s) 200
MhlI GDGCHC 2 cut(s) 16, 297
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 4 cut(s) 274, 350, 375, 406
MroNI GCCGGC 1 cut(s) 381
MseI TTAA 2 cut(s) 176, 359
MspA1I CMGCKG 1 cut(s) 19
MspI CCGG 3 cut(s) 9, 126, 382
MspR9I CCNGG 3 cut(s) 126, 127, 301
Mva1269I GAATGC 1 cut(s) 250
MvaI CCWGG 1 cut(s) 301
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 2 cut(s) 301, 310
NaeI GCCGGC 1 cut(s) 383
NciI CCSGG 2 cut(s) 126, 127
NcoI CCATGG 1 cut(s) 70
NdeII GATC 2 cut(s) 200, 255
NgoMIV GCCGGC 1 cut(s) 381
NlaIII CATG 1 cut(s) 74
NlaIV GGNNCC 1 cut(s) 305
PciSI GCTCTTC 1 cut(s) 255
PctI GAATGC 1 cut(s) 250
PdiI GCCGGC 1 cut(s) 383
PfeI GAWTC 2 cut(s) 57, 239
PflMI CCANNNNNTGG 1 cut(s) 149
PkrI GCNGC 1 cut(s) 21
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
Psp124BI GAGCTC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 299
PspGI CCWGG 1 cut(s) 299
PspN4I GGNNCC 1 cut(s) 305
PsuI RGATCY 1 cut(s) 200
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
SacI GAGCTC 1 cut(s) 16
SapI GCTCTTC 1 cut(s) 255
SaqAI TTAA 2 cut(s) 176, 359
SatI GCNGC 1 cut(s) 20
Sau3AI GATC 2 cut(s) 200, 255
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 3 cut(s) 126, 127, 301
SduI GDGCHC 2 cut(s) 16, 297
SetI ASST 5 cut(s) 16, 185, 234, 238, 418
SfaNI GCATC 1 cut(s) 394
SmaI CCCGGG 1 cut(s) 127
SsiI CCGC 4 cut(s) 6, 17, 95, 440
SstI GAGCTC 1 cut(s) 16
StyD4I CCNGG 3 cut(s) 124, 125, 299
StyI CCWWGG 1 cut(s) 70
TaqI TCGA 2 cut(s) 242, 400
TfiI GAWTC 2 cut(s) 57, 239
Tru1I TTAA 2 cut(s) 176, 359
Tru9I TTAA 2 cut(s) 176, 359
TseI GCWGC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 171
TspGWI ACGGA 1 cut(s) 101
TspMI CCCGGG 1 cut(s) 125
Van91I CCANNNNNTGG 1 cut(s) 149
XmaI CCCGGG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.