Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0018615

Physical Location & Seq

Genomic Coordinates Reverse (-)

46886851 .. 46887265

Gene Structure 415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG372600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGGTCAAATACATACCGAATTGTCCGAGCCGAGCCGAAACCAGAACATGACCTCCGGAGCTCCGTTGCCCGTGGCGGTTCTGTCTCGGATTGAGTCGCTGGGATTCGTGTTGAGCCATGGGTACAGTTTGACGGAAGTGGTGAGCCATGGGTACGGTTTGACGGAGACGGCGGGGGTGGTGGTGTCGTGCGCGTGGATGTGGTGGAGCTGCCATGACTGGTCTGAGACCAATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

79

Amino Acids

8.7

Weight (kDa)

5.02

Isoelectric Point (pI)

54.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018615)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0019731 RchiOBHm_Chr6g0282121
rosa_laevigata	RLG00000007544 RLG00000036224
rosa_multiflora	Rmu_co8280179.1_g000001 Rmu_sc0000400.1_g000017 Rmu_sc0001814.1_g000027 Rmu_sc0015120.1_g000002 Rmu_sc0022726.1_g000009
rosa_samantha	Rh7CG372600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	194
AccIII	TCCGGA	1 cut(s)	56
AciI	CCGC	2 cut(s)	77, 173
AfaI	GTAC	2 cut(s)	125, 155
AloI	GAACNNNNNNTCC	2 cut(s)	38, 70
AluBI	AGCT	2 cut(s)	62, 210
AluI	AGCT	2 cut(s)	62, 210
Alw21I	GWGCWC	1 cut(s)	64
Alw26I	GTCTC	3 cut(s)	90, 161, 221
Aor13HI	TCCGGA	1 cut(s)	56
ApeKI	GCWGC	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	154
BanII	GRGCYC	1 cut(s)	64
Bbv12I	GWGCWC	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	197
BceAI	ACGGC	1 cut(s)	186
BcoDI	GTCTC	3 cut(s)	90, 161, 221
BisI	GCNGC	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	212
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	3 cut(s)	72, 118, 148
BsaWI	WCCGGW	1 cut(s)	56
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bse1I	ACTGG	1 cut(s)	224
BseAI	TCCGGA	1 cut(s)	56
BseDI	CCNNGG	3 cut(s)	72, 118, 148
BseGI	GGATG	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	197
BseYI	CCCAGC	1 cut(s)	100
Bsh1236I	CGCG	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	64
BsiSI	CCGG	1 cut(s)	57
BsmAI	GTCTC	3 cut(s)	90, 161, 221
BsmBI	CGTCTC	1 cut(s)	161
Bso31I	GGTCTC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp13I	TCCGGA	1 cut(s)	56
Bsp19I	CCATGG	2 cut(s)	118, 148
BspACI	CCGC	2 cut(s)	77, 173
BspCNI	CTCAG	1 cut(s)	217
BspEI	TCCGGA	1 cut(s)	56
BspFNI	CGCG	1 cut(s)	194
BspTNI	GGTCTC	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	224
BssECI	CCNNGG	3 cut(s)	72, 118, 148
BssT1I	CCWWGG	2 cut(s)	118, 148
Bst4CI	ACNGT	2 cut(s)	128, 158
BstDEI	CTNAG	1 cut(s)	225
BstDSI	CCRYGG	3 cut(s)	72, 118, 148
BstF5I	GGATG	1 cut(s)	204
BstFNI	CGCG	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	194
BstMAI	GTCTC	3 cut(s)	90, 161, 221
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	1 cut(s)	197
BtgI	CCRYGG	3 cut(s)	72, 118, 148
BtsCI	GGATG	1 cut(s)	204
CfoI	GCGC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	124, 154
CviAII	CATG	4 cut(s)	49, 119, 149, 215
CviJI	RGCY	6 cut(s)	31, 36, 62, 117, 147, 210
CviKI_1	RGCY	6 cut(s)	31, 36, 62, 117, 147, 210
CviQI	GTAC	2 cut(s)	124, 154
DdeI	CTNAG	1 cut(s)	225
Ecl136II	GAGCTC	1 cut(s)	62
Eco130I	CCWWGG	2 cut(s)	118, 148
Eco24I	GRGCYC	1 cut(s)	64
Eco31I	GGTCTC	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	62
EcoT14I	CCWWGG	2 cut(s)	118, 148
EcoT38I	GRGCYC	1 cut(s)	64
ErhI	CCWWGG	2 cut(s)	118, 148
Esp3I	CGTCTC	1 cut(s)	161
FaeI	CATG	4 cut(s)	52, 122, 152, 218
FaiI	YATR	5 cut(s)	15, 50, 120, 150, 216
FatI	CATG	4 cut(s)	48, 118, 148, 214
FauI	CCCGC	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	211
FokI	GGATG	1 cut(s)	211
FriOI	GRGCYC	1 cut(s)	64
Fsp4HI	GCNGC	1 cut(s)	211
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	1 cut(s)	211
GsaI	CCCAGC	1 cut(s)	104
HapII	CCGG	1 cut(s)	57
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	4 cut(s)	52, 122, 152, 218
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HinfI	GANTC	2 cut(s)	95, 105
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	1 cut(s)	154
Hpy188I	TCNGA	3 cut(s)	28, 90, 226
Hpy188III	TCNNGA	1 cut(s)	57
HpyCH4III	ACNGT	2 cut(s)	128, 158
HpyF3I	CTNAG	1 cut(s)	225
Hsp92II	CATG	4 cut(s)	52, 122, 152, 218
HspAI	GCGC	1 cut(s)	192
Kpn2I	TCCGGA	1 cut(s)	56
LmnI	GCTCC	3 cut(s)	59, 67, 207
LpnPI	CCDG	4 cut(s)	56, 70, 86, 205
Lsp1109I	GCAGC	1 cut(s)	197
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	2 cut(s)	20, 232
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	1 cut(s)	64
MroI	TCCGGA	1 cut(s)	56
MspI	CCGG	1 cut(s)	57
MvnI	CGCG	1 cut(s)	194
NcoI	CCATGG	2 cut(s)	118, 148
NlaIII	CATG	4 cut(s)	52, 122, 152, 218
NmeAIII	GCCGAG	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	105
PkrI	GCNGC	1 cut(s)	212
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
Psp124BI	GAGCTC	1 cut(s)	64
PspFI	CCCAGC	1 cut(s)	100
RsaI	GTAC	2 cut(s)	125, 155
RsaNI	GTAC	2 cut(s)	124, 154
SacI	GAGCTC	1 cut(s)	64
SatI	GCNGC	1 cut(s)	211
SchI	GAGTC	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	3 cut(s)	56, 64, 212
Sse9I	AATT	2 cut(s)	20, 232
SsiI	CCGC	2 cut(s)	77, 173
SstI	GAGCTC	1 cut(s)	64
StyI	CCWWGG	2 cut(s)	118, 148
TaaI	ACNGT	2 cut(s)	128, 158
TasI	AATT	2 cut(s)	20, 232
TfiI	GAWTC	1 cut(s)	105
TseI	GCWGC	1 cut(s)	210
TspGWI	ACGGA	3 cut(s)	54, 149, 179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.