RLG00000007690

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0010597
Physical Location & Seq
Forward (+)
19904329 .. 19905006
678 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007690

Sequence Viewer

Length: 426 bp
ATGGGGCTTGGAAAGGATGGCCTTTCAAATTCCGTTGGCGATGTAGTGCCAAATGTAGGATCACCTCTTCAAGCTGCAGGCTCTATGATGCCTCGTGGAGATACAGATATACTGATGAAGTTAAAAATGGCTCAACTACAGCAACAGCAGAATACTAATCCACAACAACAGCTTCAGCAACATGCTCTTTCTGCTCAGCAGTTGCAAAGTTCAAATCATAATCCTCATCTGCAAGATAAAATGGGGGGTGCTGGCAGCATCACAATGGATGCTAGCATGTCGAACTCTTTTCGAGGAAATGATCAGGTCACAAAAAACCAGCCTGGGAGGAAGAGAAAGCAGCCGGTGTCATCTTCAGGCCATCATGTGTCCCCCTGTGGCTTACGCTCAATGCATGAGAATAATGGAGACTGGTTTAGCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

142

Amino Acids

15.19

Weight (kDa)

9.36

Isoelectric Point (pI)

67.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 67
AcsI RAATTY 1 cut(s) 28
AcuI CTGAAG 2 cut(s) 158, 339
AfiI CCNNNNNNNGG 1 cut(s) 56
AgsI TTSAA 3 cut(s) 27, 71, 213
AjnI CCWGG 1 cut(s) 322
AluBI AGCT 3 cut(s) 74, 172, 420
AluI AGCT 3 cut(s) 74, 172, 420
Alw26I GTCTC 1 cut(s) 402
AlwI GGATC 1 cut(s) 67
AoxI GGCC 2 cut(s) 19, 358
ApeKI GCWGC 3 cut(s) 74, 255, 340
ApoI RAATTY 1 cut(s) 28
AsuHPI GGTGA 1 cut(s) 54
AsuNHI GCTAGC 1 cut(s) 272
BauI CACGAG 1 cut(s) 93
BbvI GCAGC 3 cut(s) 61, 267, 352
BccI CCATC 2 cut(s) 11, 369
BciT130I CCWGG 1 cut(s) 324
BclI TGATCA 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 402
BfaI CTAG 1 cut(s) 273
BfmI CTRYAG 2 cut(s) 75, 137
BisI GCNGC 3 cut(s) 75, 256, 341
BlpI GCTNAGC 1 cut(s) 195
BlsI GCNGC 3 cut(s) 76, 257, 342
Bme1390I CCNGG 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 324
BmsI GCATC 3 cut(s) 78, 259, 267
BmtI GCTAGC 1 cut(s) 276
Bpu1102I GCTNAGC 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 323
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse118I RCCGGY 1 cut(s) 343
Bse1I ACTGG 1 cut(s) 416
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 323
BseGI GGATG 2 cut(s) 22, 274
BseLI CCNNNNNNNGG 1 cut(s) 56
BseMII CTCAG 1 cut(s) 209
BseNI ACTGG 1 cut(s) 416
BseXI GCAGC 3 cut(s) 61, 267, 352
BshFI GGCC 2 cut(s) 21, 360
BsiSI CCGG 1 cut(s) 344
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 402
BsmFI GGGAC 1 cut(s) 355
BsnI GGCC 2 cut(s) 21, 360
Bsp143I GATC 2 cut(s) 59, 301
Bsp1720I GCTNAGC 1 cut(s) 195
BspANI GGCC 2 cut(s) 21, 360
BspCNI CTCAG 1 cut(s) 208
BspMAI CTGCAG 1 cut(s) 79
BspOI GCTAGC 1 cut(s) 276
BspPI GGATC 1 cut(s) 67
BsrFI RCCGGY 1 cut(s) 343
BsrI ACTGG 1 cut(s) 416
BssAI RCCGGY 1 cut(s) 343
BssECI CCNNGG 1 cut(s) 323
BssMI GATC 2 cut(s) 59, 301
BssSI CACGAG 1 cut(s) 93
Bst2BI CACGAG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 324
Bst6I CTCTTC 2 cut(s) 72, 326
BstC8I GCNNGC 3 cut(s) 79, 253, 274
BstDEI CTNAG 1 cut(s) 195
BstF5I GGATG 2 cut(s) 22, 274
BstKTI GATC 2 cut(s) 62, 304
BstMAI GTCTC 1 cut(s) 402
BstMBI GATC 2 cut(s) 59, 301
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNI CCWGG 1 cut(s) 324
BstNSI RCATGY 2 cut(s) 185, 280
BstSCI CCNGG 1 cut(s) 322
BstSFI CTRYAG 2 cut(s) 75, 137
BstV1I GCAGC 3 cut(s) 61, 267, 352
BsuRI GGCC 2 cut(s) 21, 360
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 2 cut(s) 22, 274
Cac8I GCNNGC 3 cut(s) 79, 253, 274
Cfr10I RCCGGY 1 cut(s) 343
CviAII CATG 4 cut(s) 182, 277, 365, 395
DdeI CTNAG 1 cut(s) 195
DpnI GATC 2 cut(s) 61, 303
DpnII GATC 2 cut(s) 59, 301
Eam1104I CTCTTC 2 cut(s) 72, 326
EarI CTCTTC 2 cut(s) 72, 326
Eco57I CTGAAG 2 cut(s) 158, 339
EcoRII CCWGG 1 cut(s) 322
EcoT22I ATGCAT 1 cut(s) 396
FaeI CATG 4 cut(s) 185, 280, 368, 398
FaiI YATR 7 cut(s) 86, 110, 183, 219, 278, 366, 396
FaqI GGGAC 1 cut(s) 355
FatI CATG 4 cut(s) 181, 276, 364, 394
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 3 cut(s) 75, 256, 341
FokI GGATG 2 cut(s) 29, 281
Fsp4HI GCNGC 3 cut(s) 75, 256, 341
FspBI CTAG 1 cut(s) 273
GluI GCNGC 3 cut(s) 75, 256, 341
HaeIII GGCC 2 cut(s) 21, 360
HapII CCGG 1 cut(s) 344
Hin1II CATG 4 cut(s) 185, 280, 368, 398
HpaII CCGG 1 cut(s) 344
HphI GGTGA 1 cut(s) 54
HpyCH4V TGCA 4 cut(s) 77, 205, 232, 394
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 195
Hsp92II CATG 4 cut(s) 185, 280, 368, 398
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 2 cut(s) 59, 301
Lsp1109I GCAGC 3 cut(s) 61, 267, 352
LweI GCATC 3 cut(s) 78, 259, 267
MaeI CTAG 1 cut(s) 273
MaeIII GTNAC 1 cut(s) 307
MalI GATC 2 cut(s) 61, 303
MboI GATC 2 cut(s) 59, 301
MboII GAAGA 3 cut(s) 59, 343, 345
MluCI AATT 1 cut(s) 28
MnlI CCTC 5 cut(s) 75, 102, 234, 287, 321
Mph1103I ATGCAT 1 cut(s) 396
MseI TTAA 1 cut(s) 122
MslI CAYNNNNRTG 1 cut(s) 263
MspI CCGG 1 cut(s) 344
MspR9I CCNGG 1 cut(s) 324
MvaI CCWGG 1 cut(s) 324
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 2 cut(s) 59, 301
NheI GCTAGC 1 cut(s) 272
NlaIII CATG 4 cut(s) 185, 280, 368, 398
NmuCI GTSAC 1 cut(s) 307
NsiI ATGCAT 1 cut(s) 396
NspI RCATGY 2 cut(s) 185, 280
PkrI GCNGC 3 cut(s) 76, 257, 342
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PstI CTGCAG 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 263
SaqAI TTAA 1 cut(s) 122
SatI GCNGC 3 cut(s) 75, 256, 341
Sau3AI GATC 2 cut(s) 59, 301
ScrFI CCNGG 1 cut(s) 324
SetI ASST 5 cut(s) 67, 76, 174, 309, 422
SfaNI GCATC 3 cut(s) 78, 259, 267
SfcI CTRYAG 2 cut(s) 75, 137
SmiMI CAYNNNNRTG 1 cut(s) 263
Sse9I AATT 1 cut(s) 28
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 322
TaqI TCGA 2 cut(s) 281, 292
TasI AATT 1 cut(s) 28
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 3 cut(s) 74, 255, 340
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 1 cut(s) 131
TspGWI ACGGA 1 cut(s) 22
XapI RAATTY 1 cut(s) 28
XceI RCATGY 2 cut(s) 185, 280
XspI CTAG 1 cut(s) 273
Zsp2I ATGCAT 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.