Rmu_sc0003466.1_g000002

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003466.1
OG0010597
Physical Location & Seq
Reverse (-)
12297 .. 15601
3305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003466.1_g000002.1.cds

Sequence Viewer

Length: 465 bp
atggggcttggaaaggatggcctttcaaattctgttggcgatgtagtgccaaatgtaggatcacctcttcaagctgcaggctctatgatgcttagtggagatacagatatgctgatgaagttaaaaatggctcaactacagcaacagcagaatagtaatccacaacaacagcttcagcagcatgctctttctgctcagcagttgcaaagttcaaatcataatcctcatctgcaagataaaatggggggtgctggcagcatcacaatggatgctagcatgtcaaactcttttcgaggaaatgatcagttcccagcttcagaagcttctgatgctatttgggcgcggcgcgtggcggcgagaccgcgccgggcgttcttagtttcagaagcttctgatgctaacttggcgcggcgcgtggcggcgcgttggtggcgatcgggcggtggtccgatgctgaggttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

154

Amino Acids

16.56

Weight (kDa)

10.35

Isoelectric Point (pI)

68.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 6 cut(s) 343, 348, 364, 409, 414, 424
AciI CCGC 6 cut(s) 343, 353, 362, 409, 419, 441
AclWI GGATC 1 cut(s) 67
AcsI RAATTY 1 cut(s) 28
AcuI CTGAAG 2 cut(s) 158, 300
AfiI CCNNNNNNNGG 1 cut(s) 56
AgsI TTSAA 3 cut(s) 27, 71, 213
AluBI AGCT 5 cut(s) 74, 172, 314, 323, 389
AluI AGCT 5 cut(s) 74, 172, 314, 323, 389
Alw26I GTCTC 1 cut(s) 352
AlwI GGATC 1 cut(s) 67
AoxI GGCC 1 cut(s) 19
ApeKI GCWGC 3 cut(s) 74, 178, 255
ApoI RAATTY 1 cut(s) 28
AspLEI GCGC 6 cut(s) 343, 348, 366, 409, 414, 424
AspS9I GGNCC 1 cut(s) 446
AsuC2I CCSGG 1 cut(s) 368
AsuHPI GGTGA 1 cut(s) 54
AsuNHI GCTAGC 1 cut(s) 272
AvaII GGWCC 1 cut(s) 446
BbvCI CCTCAGC 1 cut(s) 455
BbvI GCAGC 3 cut(s) 61, 190, 267
BccI CCATC 1 cut(s) 11
BclI TGATCA 1 cut(s) 301
BcnI CCSGG 1 cut(s) 368
BcoDI GTCTC 1 cut(s) 352
BfaI CTAG 1 cut(s) 273
BfmI CTRYAG 2 cut(s) 75, 137
BisI GCNGC 7 cut(s) 75, 179, 256, 344, 354, 410, 420
BlpI GCTNAGC 1 cut(s) 195
BlsI GCNGC 7 cut(s) 76, 180, 257, 345, 355, 411, 421
Bme1390I CCNGG 1 cut(s) 368
Bme18I GGWCC 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 446
BmrFI CCNGG 1 cut(s) 368
BmsI GCATC 6 cut(s) 78, 259, 267, 319, 385, 441
BmtI GCTAGC 1 cut(s) 276
Bpu10I CCTNAGC 1 cut(s) 455
Bpu1102I GCTNAGC 1 cut(s) 195
BpuMI CCSGG 1 cut(s) 368
BsaI GGTCTC 1 cut(s) 352
Bsc4I CCNNNNNNNGG 1 cut(s) 56
BseGI GGATG 2 cut(s) 22, 274
BseLI CCNNNNNNNGG 1 cut(s) 56
BseMII CTCAG 2 cut(s) 209, 446
BseXI GCAGC 3 cut(s) 61, 190, 267
BseYI CCCAGC 1 cut(s) 310
Bsh1236I CGCG 6 cut(s) 343, 348, 364, 409, 414, 424
Bsh1285I CGRYCG 1 cut(s) 437
BshFI GGCC 1 cut(s) 21
BsiEI CGRYCG 1 cut(s) 437
BsiSI CCGG 1 cut(s) 367
BslI CCNNNNNNNGG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 352
BsnI GGCC 1 cut(s) 21
Bso31I GGTCTC 1 cut(s) 352
Bsp143I GATC 3 cut(s) 59, 301, 434
Bsp1720I GCTNAGC 1 cut(s) 195
BspACI CCGC 6 cut(s) 343, 353, 362, 409, 419, 441
BspANI GGCC 1 cut(s) 21
BspCNI CTCAG 2 cut(s) 208, 447
BspFNI CGCG 6 cut(s) 343, 348, 364, 409, 414, 424
BspMAI CTGCAG 1 cut(s) 79
BspOI GCTAGC 1 cut(s) 276
BspPI GGATC 1 cut(s) 67
BspTNI GGTCTC 1 cut(s) 352
BssMI GATC 3 cut(s) 59, 301, 434
Bst6I CTCTTC 1 cut(s) 72
BstC8I GCNNGC 4 cut(s) 79, 183, 253, 274
BstDEI CTNAG 4 cut(s) 92, 195, 376, 455
BstF5I GGATG 2 cut(s) 22, 274
BstFNI CGCG 6 cut(s) 343, 348, 364, 409, 414, 424
BstHHI GCGC 6 cut(s) 343, 348, 366, 409, 414, 424
BstKTI GATC 3 cut(s) 62, 304, 437
BstMAI GTCTC 1 cut(s) 352
BstMBI GATC 3 cut(s) 59, 301, 434
BstMCI CGRYCG 1 cut(s) 437
BstMWI GCNNNNNNNGC 8 cut(s) 178, 191, 320, 329, 338, 395, 404, 430
BstNSI RCATGY 2 cut(s) 185, 280
BstSCI CCNGG 1 cut(s) 366
BstSFI CTRYAG 2 cut(s) 75, 137
BstUI CGCG 6 cut(s) 343, 348, 364, 409, 414, 424
BstV1I GCAGC 3 cut(s) 61, 190, 267
BsuRI GGCC 1 cut(s) 21
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 2 cut(s) 22, 274
Cac8I GCNNGC 4 cut(s) 79, 183, 253, 274
CfoI GCGC 6 cut(s) 343, 348, 366, 409, 414, 424
Cfr13I GGNCC 1 cut(s) 446
CviAII CATG 2 cut(s) 182, 277
CviJI RGCY 9 cut(s) 7, 21, 74, 81, 131, 172, 314, 323, 389
CviKI_1 RGCY 9 cut(s) 7, 21, 74, 81, 131, 172, 314, 323, 389
DdeI CTNAG 4 cut(s) 92, 195, 376, 455
DpnI GATC 3 cut(s) 61, 303, 436
DpnII GATC 3 cut(s) 59, 301, 434
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco31I GGTCTC 1 cut(s) 352
Eco47I GGWCC 1 cut(s) 446
Eco57I CTGAAG 2 cut(s) 158, 300
FaeI CATG 2 cut(s) 185, 280
FaiI YATR 5 cut(s) 86, 110, 183, 219, 278
FatI CATG 2 cut(s) 181, 276
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 7 cut(s) 75, 179, 256, 344, 354, 410, 420
FokI GGATG 2 cut(s) 29, 281
Fsp4HI GCNGC 7 cut(s) 75, 179, 256, 344, 354, 410, 420
FspBI CTAG 1 cut(s) 273
GlaI GCGC 6 cut(s) 342, 347, 365, 408, 413, 423
GluI GCNGC 7 cut(s) 75, 179, 256, 344, 354, 410, 420
GsaI CCCAGC 1 cut(s) 314
HaeIII GGCC 1 cut(s) 21
HapII CCGG 1 cut(s) 367
HhaI GCGC 6 cut(s) 343, 348, 366, 409, 414, 424
Hin1II CATG 2 cut(s) 185, 280
Hin6I GCGC 6 cut(s) 341, 346, 364, 407, 412, 422
HinP1I GCGC 6 cut(s) 341, 346, 364, 407, 412, 422
HindIII AAGCTT 2 cut(s) 321, 387
HpaII CCGG 1 cut(s) 367
HphI GGTGA 1 cut(s) 54
Hpy188I TCNGA 5 cut(s) 319, 328, 385, 394, 450
HpyCH4V TGCA 3 cut(s) 77, 205, 232
HpyF10VI GCNNNNNNNGC 8 cut(s) 178, 191, 320, 329, 338, 395, 404, 430
HpyF3I CTNAG 4 cut(s) 92, 195, 376, 455
Hsp92II CATG 2 cut(s) 185, 280
HspAI GCGC 6 cut(s) 341, 346, 364, 407, 412, 422
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 3 cut(s) 59, 301, 434
LpnPI CCDG 4 cut(s) 63, 237, 324, 380
Lsp1109I GCAGC 3 cut(s) 61, 190, 267
LweI GCATC 6 cut(s) 78, 259, 267, 319, 385, 441
MaeI CTAG 1 cut(s) 273
MalI GATC 3 cut(s) 61, 303, 436
MboI GATC 3 cut(s) 59, 301, 434
MboII GAAGA 1 cut(s) 59
MluCI AATT 1 cut(s) 28
MnlI CCTC 4 cut(s) 75, 234, 287, 450
MseI TTAA 1 cut(s) 122
MslI CAYNNNNRTG 1 cut(s) 263
MspI CCGG 1 cut(s) 367
MspR9I CCNGG 1 cut(s) 368
MteI GCGCNGCGC 2 cut(s) 344, 410
MvnI CGCG 6 cut(s) 343, 348, 364, 409, 414, 424
MwoI GCNNNNNNNGC 8 cut(s) 178, 191, 320, 329, 338, 395, 404, 430
NciI CCSGG 1 cut(s) 368
NdeII GATC 3 cut(s) 59, 301, 434
NheI GCTAGC 1 cut(s) 272
NlaIII CATG 2 cut(s) 185, 280
NspI RCATGY 2 cut(s) 185, 280
PaeI GCATGC 1 cut(s) 185
PkrI GCNGC 7 cut(s) 76, 180, 257, 345, 355, 411, 421
Ple19I CGATCG 1 cut(s) 437
PspFI CCCAGC 1 cut(s) 310
PspPI GGNCC 1 cut(s) 446
PstI CTGCAG 1 cut(s) 79
PvuI CGATCG 1 cut(s) 437
RseI CAYNNNNRTG 1 cut(s) 263
SaqAI TTAA 1 cut(s) 122
SatI GCNGC 7 cut(s) 75, 179, 256, 344, 354, 410, 420
Sau3AI GATC 3 cut(s) 59, 301, 434
Sau96I GGNCC 1 cut(s) 446
ScrFI CCNGG 1 cut(s) 368
SetI ASST 7 cut(s) 67, 76, 174, 316, 325, 391, 461
SfaNI GCATC 6 cut(s) 78, 259, 267, 319, 385, 441
SfcI CTRYAG 2 cut(s) 75, 137
SinI GGWCC 1 cut(s) 446
SmiMI CAYNNNNRTG 1 cut(s) 263
SphI GCATGC 1 cut(s) 185
Sse9I AATT 1 cut(s) 28
SsiI CCGC 6 cut(s) 343, 353, 362, 409, 419, 441
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 366
TaqI TCGA 1 cut(s) 292
TasI AATT 1 cut(s) 28
TauI GCSGC 4 cut(s) 346, 356, 412, 422
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TseI GCWGC 3 cut(s) 74, 178, 255
TspDTI ATGAA 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 446
XapI RAATTY 1 cut(s) 28
XceI RCATGY 2 cut(s) 185, 280
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.