Rmu_sc0020719.1_g000001

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020719.1
OG0010597
Physical Location & Seq
Forward (+)
1 .. 487
487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020719.1_g000001.1.cds

Sequence Viewer

Length: 340 bp
tggaaaggatggcctttcaaattccgttggcgatgtagtgccaaatgtaggatcacctcttcaagctgcaggctctatgatacctcgtggagatacagatatgctgacgaagttaaaaatggctcaactacagcaacagcagaatagtaatccacaacaacagcttcagcagcatgctctttctgctcagcagttgcaaagttcaaatcataatcctcatctgcaagataaaatgaggggtgttggcagcatcacaatggatgctagcatgtcgaactcttttcgaggaaatgatcaggtctgtccttttgttattatagataggtattgtttccattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

112

Amino Acids

12.22

Weight (kDa)

7.08

Isoelectric Point (pI)

53.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 59
AcsI RAATTY 1 cut(s) 20
AcuI CTGAAG 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 48
AgsI TTSAA 3 cut(s) 19, 63, 205
AluBI AGCT 2 cut(s) 66, 164
AluI AGCT 2 cut(s) 66, 164
AlwI GGATC 1 cut(s) 59
AoxI GGCC 1 cut(s) 11
ApeKI GCWGC 3 cut(s) 66, 170, 247
ApoI RAATTY 1 cut(s) 20
AsuHPI GGTGA 1 cut(s) 46
AsuNHI GCTAGC 1 cut(s) 264
BauI CACGAG 1 cut(s) 85
BbvI GCAGC 3 cut(s) 53, 182, 259
BccI CCATC 1 cut(s) 3
BclI TGATCA 1 cut(s) 293
BfaI CTAG 1 cut(s) 265
BfmI CTRYAG 2 cut(s) 67, 129
BisI GCNGC 3 cut(s) 67, 171, 248
BlpI GCTNAGC 1 cut(s) 187
BlsI GCNGC 3 cut(s) 68, 172, 249
BmsI GCATC 2 cut(s) 251, 259
BmtI GCTAGC 1 cut(s) 268
Bpu1102I GCTNAGC 1 cut(s) 187
Bsc4I CCNNNNNNNGG 1 cut(s) 48
BseGI GGATG 2 cut(s) 14, 266
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 201
BseXI GCAGC 3 cut(s) 53, 182, 259
BshFI GGCC 1 cut(s) 13
BslI CCNNNNNNNGG 1 cut(s) 48
BsnI GGCC 1 cut(s) 13
Bsp143I GATC 2 cut(s) 51, 293
Bsp1720I GCTNAGC 1 cut(s) 187
BspANI GGCC 1 cut(s) 13
BspCNI CTCAG 1 cut(s) 200
BspMAI CTGCAG 1 cut(s) 71
BspOI GCTAGC 1 cut(s) 268
BspPI GGATC 1 cut(s) 59
BssMI GATC 2 cut(s) 51, 293
BssSI CACGAG 1 cut(s) 85
Bst2BI CACGAG 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 64
BstC8I GCNNGC 3 cut(s) 71, 175, 266
BstDEI CTNAG 1 cut(s) 187
BstF5I GGATG 2 cut(s) 14, 266
BstKTI GATC 2 cut(s) 54, 296
BstMBI GATC 2 cut(s) 51, 293
BstMWI GCNNNNNNNGC 2 cut(s) 170, 183
BstNSI RCATGY 2 cut(s) 177, 272
BstSFI CTRYAG 2 cut(s) 67, 129
BstV1I GCAGC 3 cut(s) 53, 182, 259
BsuRI GGCC 1 cut(s) 13
BtgZI GCGATG 1 cut(s) 46
BtsCI GGATG 2 cut(s) 14, 266
Cac8I GCNNGC 3 cut(s) 71, 175, 266
CviAII CATG 2 cut(s) 174, 269
CviJI RGCY 5 cut(s) 13, 66, 73, 123, 164
CviKI_1 RGCY 5 cut(s) 13, 66, 73, 123, 164
DdeI CTNAG 1 cut(s) 187
DpnI GATC 2 cut(s) 53, 295
DpnII GATC 2 cut(s) 51, 293
Eam1104I CTCTTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 150
FaeI CATG 2 cut(s) 177, 272
FaiI YATR 6 cut(s) 78, 102, 175, 211, 270, 318
FatI CATG 2 cut(s) 173, 268
FbaI TGATCA 1 cut(s) 293
Fnu4HI GCNGC 3 cut(s) 67, 171, 248
FokI GGATG 2 cut(s) 21, 273
Fsp4HI GCNGC 3 cut(s) 67, 171, 248
FspBI CTAG 1 cut(s) 265
GluI GCNGC 3 cut(s) 67, 171, 248
HaeIII GGCC 1 cut(s) 13
Hin1II CATG 2 cut(s) 177, 272
HphI GGTGA 1 cut(s) 46
HpyCH4V TGCA 3 cut(s) 69, 197, 224
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 183
HpyF3I CTNAG 1 cut(s) 187
Hsp92II CATG 2 cut(s) 177, 272
Ksp22I TGATCA 1 cut(s) 293
Kzo9I GATC 2 cut(s) 51, 293
LpnPI CCDG 2 cut(s) 55, 282
Lsp1109I GCAGC 3 cut(s) 53, 182, 259
LweI GCATC 2 cut(s) 251, 259
MaeI CTAG 1 cut(s) 265
MalI GATC 2 cut(s) 53, 295
MboI GATC 2 cut(s) 51, 293
MboII GAAGA 1 cut(s) 51
MluCI AATT 1 cut(s) 20
MnlI CCTC 5 cut(s) 67, 94, 226, 229, 279
MseI TTAA 2 cut(s) 114, 338
MslI CAYNNNNRTG 1 cut(s) 255
MwoI GCNNNNNNNGC 2 cut(s) 170, 183
NdeII GATC 2 cut(s) 51, 293
NheI GCTAGC 1 cut(s) 264
NlaIII CATG 2 cut(s) 177, 272
NspI RCATGY 2 cut(s) 177, 272
PaeI GCATGC 1 cut(s) 177
PkrI GCNGC 3 cut(s) 68, 172, 249
PstI CTGCAG 1 cut(s) 71
RseI CAYNNNNRTG 1 cut(s) 255
SaqAI TTAA 2 cut(s) 114, 338
SatI GCNGC 3 cut(s) 67, 171, 248
Sau3AI GATC 2 cut(s) 51, 293
SetI ASST 6 cut(s) 59, 68, 86, 166, 301, 327
SfaNI GCATC 2 cut(s) 251, 259
SfcI CTRYAG 2 cut(s) 67, 129
SmiMI CAYNNNNRTG 1 cut(s) 255
SphI GCATGC 1 cut(s) 177
Sse9I AATT 1 cut(s) 20
SspMI CTAG 1 cut(s) 265
TaqI TCGA 2 cut(s) 273, 284
TasI AATT 1 cut(s) 20
Tru1I TTAA 2 cut(s) 114, 338
Tru9I TTAA 2 cut(s) 114, 338
TseI GCWGC 3 cut(s) 66, 170, 247
TspGWI ACGGA 1 cut(s) 14
XapI RAATTY 1 cut(s) 20
XceI RCATGY 2 cut(s) 177, 272
XspI CTAG 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.