Rh1CG081100

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0010597
Physical Location & Seq
Forward (+)
16937067 .. 16937651
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG081100.1

Sequence Viewer

Length: 351 bp
ATGCTGACACCACAACACCAGCAACAACTTATGCTTGCCCAGCAAAATTTGACATCCCCATCTGCCAGTGATGATAGTAGAAGACTAAGAATGCTATTGAATAATCGAAGTATGGGGCTTGGAAAGGATGGCCTTTCAAACTCCGTTGGCGATGTAGTGCCAAATGTAGGATCACCTCTTCAAGCTGCAGGCTCTATGATGCCTCGTGGAGATACAGATATGCTGATGAAGGTCACAAAAAACCAGCCTGGGAGGAAGAGAAAGCAGCCGGTGTCATCTTCAGGCCATCATGTGTCCCCCTGTGGCTTACGCTCAATACATGAGAATAATGGAGACTGGTTTAGCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

116

Amino Acids

12.62

Weight (kDa)

10.16

Isoelectric Point (pI)

62.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 178
AcsI RAATTY 1 cut(s) 46
AcuI CTGAAG 1 cut(s) 264
AfiI CCNNNNNNNGG 1 cut(s) 167
AgsI TTSAA 3 cut(s) 100, 138, 182
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 2 cut(s) 185, 345
AluI AGCT 2 cut(s) 185, 345
Alw26I GTCTC 1 cut(s) 327
AlwI GGATC 1 cut(s) 178
AoxI GGCC 2 cut(s) 130, 283
ApeKI GCWGC 2 cut(s) 185, 265
ApoI RAATTY 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 165
BauI CACGAG 1 cut(s) 204
BbsI GAAGAC 1 cut(s) 88
BbvI GCAGC 2 cut(s) 172, 277
BccI CCATC 3 cut(s) 67, 122, 294
BciT130I CCWGG 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 327
BfmI CTRYAG 1 cut(s) 186
BisI GCNGC 2 cut(s) 186, 266
BlsI GCNGC 2 cut(s) 187, 267
Bme1390I CCNGG 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 189
BpiI GAAGAC 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 248
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse118I RCCGGY 1 cut(s) 268
Bse1I ACTGG 2 cut(s) 66, 341
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 248
BseGI GGATG 2 cut(s) 53, 133
BseLI CCNNNNNNNGG 1 cut(s) 167
BseNI ACTGG 2 cut(s) 66, 341
BseXI GCAGC 2 cut(s) 172, 277
BseYI CCCAGC 1 cut(s) 39
BshFI GGCC 2 cut(s) 132, 285
BsiSI CCGG 1 cut(s) 269
BslFI GGGAC 1 cut(s) 280
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 327
BsmFI GGGAC 1 cut(s) 280
BsmI GAATGC 1 cut(s) 96
BsnI GGCC 2 cut(s) 132, 285
Bsp143I GATC 1 cut(s) 170
BspANI GGCC 2 cut(s) 132, 285
BspMAI CTGCAG 1 cut(s) 190
BspPI GGATC 1 cut(s) 178
BsrFI RCCGGY 1 cut(s) 268
BsrI ACTGG 2 cut(s) 66, 341
BssAI RCCGGY 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 248
BssMI GATC 1 cut(s) 170
BssSI CACGAG 1 cut(s) 204
Bst2BI CACGAG 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 249
Bst6I CTCTTC 2 cut(s) 183, 251
BstC8I GCNNGC 2 cut(s) 36, 190
BstDEI CTNAG 1 cut(s) 86
BstF5I GGATG 2 cut(s) 53, 133
BstKTI GATC 1 cut(s) 173
BstMAI GTCTC 1 cut(s) 327
BstMBI GATC 1 cut(s) 170
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 247
BstSFI CTRYAG 1 cut(s) 186
BstV1I GCAGC 2 cut(s) 172, 277
BstV2I GAAGAC 1 cut(s) 88
BsuRI GGCC 2 cut(s) 132, 285
BtgZI GCGATG 1 cut(s) 165
BtsCI GGATG 2 cut(s) 53, 133
BtsIMutI CAGTG 1 cut(s) 73
Cac8I GCNNGC 2 cut(s) 36, 190
Cfr10I RCCGGY 1 cut(s) 268
CviAII CATG 2 cut(s) 290, 320
CviJI RGCY 9 cut(s) 118, 132, 185, 192, 247, 268, 285, 306, 345
CviKI_1 RGCY 9 cut(s) 118, 132, 185, 192, 247, 268, 285, 306, 345
DdeI CTNAG 1 cut(s) 86
DpnI GATC 1 cut(s) 172
DpnII GATC 1 cut(s) 170
Eam1104I CTCTTC 2 cut(s) 183, 251
EarI CTCTTC 2 cut(s) 183, 251
Eco57I CTGAAG 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 247
FaeI CATG 2 cut(s) 293, 323
FaiI YATR 6 cut(s) 32, 113, 197, 221, 291, 321
FaqI GGGAC 1 cut(s) 280
FatI CATG 2 cut(s) 289, 319
Fnu4HI GCNGC 2 cut(s) 186, 266
FokI GGATG 2 cut(s) 40, 140
Fsp4HI GCNGC 2 cut(s) 186, 266
GluI GCNGC 2 cut(s) 186, 266
GsaI CCCAGC 1 cut(s) 43
HaeIII GGCC 2 cut(s) 132, 285
HapII CCGG 1 cut(s) 269
Hin1II CATG 2 cut(s) 293, 323
HpaII CCGG 1 cut(s) 269
HphI GGTGA 1 cut(s) 165
HpyAV CCTTC 1 cut(s) 223
HpyCH4V TGCA 1 cut(s) 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 1 cut(s) 86
Hsp92II CATG 2 cut(s) 293, 323
Kzo9I GATC 1 cut(s) 170
Lsp1109I GCAGC 2 cut(s) 172, 277
LweI GCATC 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 232
MalI GATC 1 cut(s) 172
MboI GATC 1 cut(s) 170
MboII GAAGA 4 cut(s) 93, 170, 268, 270
MluCI AATT 1 cut(s) 46
MnlI CCTC 3 cut(s) 186, 213, 246
MspI CCGG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 249
Mva1269I GAATGC 1 cut(s) 96
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 1 cut(s) 40
NdeII GATC 1 cut(s) 170
NlaIII CATG 2 cut(s) 293, 323
NmuCI GTSAC 1 cut(s) 232
PctI GAATGC 1 cut(s) 96
PkrI GCNGC 2 cut(s) 187, 267
Psp6I CCWGG 1 cut(s) 247
PspFI CCCAGC 1 cut(s) 39
PspGI CCWGG 1 cut(s) 247
PstI CTGCAG 1 cut(s) 190
SatI GCNGC 2 cut(s) 186, 266
Sau3AI GATC 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 249
SetI ASST 4 cut(s) 178, 187, 234, 347
SfaNI GCATC 1 cut(s) 189
SfcI CTRYAG 1 cut(s) 186
Sse9I AATT 1 cut(s) 46
StyD4I CCNGG 1 cut(s) 247
TaqI TCGA 1 cut(s) 106
TasI AATT 1 cut(s) 46
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 2 cut(s) 185, 265
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 242
TspGWI ACGGA 1 cut(s) 133
TspRI CASTG 1 cut(s) 73
XapI RAATTY 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.