RLG00000021293

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0010597
Physical Location & Seq
Reverse (-)
73895350 .. 73896138
789 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021293

Sequence Viewer

Length: 537 bp
ATGCTGACACCACAACACCAGCAACAACTTATGCTTGCCCAGCAAAATTTGACATCCCCATCTGCCAGTGATGATAGTAGAAGACTAAGAATGCTATTGAATAATCGAAGTATGGGGCTTGGAAAGGATGGCCTTTCAAATTCCGTTGGCGATGTAGTGCCAAATGTAGGATCACCTCTTCAAGCTGCAGGCTCTATGATGCCTCGTGGAGATACAGATATGCTGATGAAGTTAAAAATGGCTCAACTACAGCAACAGCAGAATACTAATCCACAACAACAGCTTCAGCAGCATGCTCTTTCTGCTCAGCAGTTGCAAAGTTCAAATCATAATCCTCATCTGCAAGATAAAATGGGGGGTGCTGGCAGCATCACAATGGATGCTAGCATGTCGAACTCTTTTCGAGGAAATGATCAGGTCACAAAAAACCAGCCTGGGAGGAAGAGAAAGCAGCCGGTGTCATCTTCAGGCCATCATGTGTCCCCCTGTGGCTTACGCTCAATGCATGAGAATAATGGAGACTGGTTTAGCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

179

Amino Acids

19.47

Weight (kDa)

9.89

Isoelectric Point (pI)

71.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 178
AcsI RAATTY 2 cut(s) 46, 139
AcuI CTGAAG 2 cut(s) 269, 450
AfiI CCNNNNNNNGG 1 cut(s) 167
AgsI TTSAA 4 cut(s) 100, 138, 182, 324
AjnI CCWGG 1 cut(s) 433
AluBI AGCT 3 cut(s) 185, 283, 531
AluI AGCT 3 cut(s) 185, 283, 531
Alw26I GTCTC 1 cut(s) 513
AlwI GGATC 1 cut(s) 178
AoxI GGCC 2 cut(s) 130, 469
ApeKI GCWGC 4 cut(s) 185, 289, 366, 451
ApoI RAATTY 2 cut(s) 46, 139
AsuHPI GGTGA 1 cut(s) 165
AsuNHI GCTAGC 1 cut(s) 383
BauI CACGAG 1 cut(s) 204
BbsI GAAGAC 1 cut(s) 88
BbvI GCAGC 4 cut(s) 172, 301, 378, 463
BccI CCATC 3 cut(s) 67, 122, 480
BciT130I CCWGG 1 cut(s) 435
BclI TGATCA 1 cut(s) 412
BcoDI GTCTC 1 cut(s) 513
BfaI CTAG 1 cut(s) 384
BfmI CTRYAG 2 cut(s) 186, 248
BisI GCNGC 4 cut(s) 186, 290, 367, 452
BlpI GCTNAGC 1 cut(s) 306
BlsI GCNGC 4 cut(s) 187, 291, 368, 453
Bme1390I CCNGG 1 cut(s) 435
BmrFI CCNGG 1 cut(s) 435
BmsI GCATC 3 cut(s) 189, 370, 378
BmtI GCTAGC 1 cut(s) 387
BpiI GAAGAC 1 cut(s) 88
Bpu1102I GCTNAGC 1 cut(s) 306
BsaJI CCNNGG 1 cut(s) 434
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse118I RCCGGY 1 cut(s) 454
Bse1I ACTGG 2 cut(s) 66, 527
BseBI CCWGG 1 cut(s) 435
BseDI CCNNGG 1 cut(s) 434
BseGI GGATG 3 cut(s) 53, 133, 385
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 2 cut(s) 66, 527
BseXI GCAGC 4 cut(s) 172, 301, 378, 463
BseYI CCCAGC 1 cut(s) 39
BshFI GGCC 2 cut(s) 132, 471
BsiSI CCGG 1 cut(s) 455
BslFI GGGAC 1 cut(s) 466
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 513
BsmFI GGGAC 1 cut(s) 466
BsmI GAATGC 1 cut(s) 96
BsnI GGCC 2 cut(s) 132, 471
Bsp143I GATC 2 cut(s) 170, 412
Bsp1720I GCTNAGC 1 cut(s) 306
BspANI GGCC 2 cut(s) 132, 471
BspCNI CTCAG 1 cut(s) 319
BspMAI CTGCAG 1 cut(s) 190
BspOI GCTAGC 1 cut(s) 387
BspPI GGATC 1 cut(s) 178
BsrFI RCCGGY 1 cut(s) 454
BsrI ACTGG 2 cut(s) 66, 527
BssAI RCCGGY 1 cut(s) 454
BssECI CCNNGG 1 cut(s) 434
BssMI GATC 2 cut(s) 170, 412
BssSI CACGAG 1 cut(s) 204
Bst2BI CACGAG 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 435
Bst6I CTCTTC 2 cut(s) 183, 437
BstC8I GCNNGC 5 cut(s) 36, 190, 294, 364, 385
BstDEI CTNAG 2 cut(s) 86, 306
BstF5I GGATG 3 cut(s) 53, 133, 385
BstKTI GATC 2 cut(s) 173, 415
BstMAI GTCTC 1 cut(s) 513
BstMBI GATC 2 cut(s) 170, 412
BstMWI GCNNNNNNNGC 3 cut(s) 40, 289, 302
BstNI CCWGG 1 cut(s) 435
BstNSI RCATGY 2 cut(s) 296, 391
BstSCI CCNGG 1 cut(s) 433
BstSFI CTRYAG 2 cut(s) 186, 248
BstV1I GCAGC 4 cut(s) 172, 301, 378, 463
BstV2I GAAGAC 1 cut(s) 88
BsuRI GGCC 2 cut(s) 132, 471
BtgZI GCGATG 1 cut(s) 165
BtsCI GGATG 3 cut(s) 53, 133, 385
BtsIMutI CAGTG 1 cut(s) 73
Cac8I GCNNGC 5 cut(s) 36, 190, 294, 364, 385
Cfr10I RCCGGY 1 cut(s) 454
CviAII CATG 4 cut(s) 293, 388, 476, 506
DdeI CTNAG 2 cut(s) 86, 306
DpnI GATC 2 cut(s) 172, 414
DpnII GATC 2 cut(s) 170, 412
Eam1104I CTCTTC 2 cut(s) 183, 437
EarI CTCTTC 2 cut(s) 183, 437
Eco57I CTGAAG 2 cut(s) 269, 450
EcoRII CCWGG 1 cut(s) 433
EcoT22I ATGCAT 1 cut(s) 507
FaeI CATG 4 cut(s) 296, 391, 479, 509
FaiI YATR 9 cut(s) 32, 113, 197, 221, 294, 330, 389, 477, 507
FaqI GGGAC 1 cut(s) 466
FatI CATG 4 cut(s) 292, 387, 475, 505
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 4 cut(s) 186, 290, 367, 452
FokI GGATG 3 cut(s) 40, 140, 392
Fsp4HI GCNGC 4 cut(s) 186, 290, 367, 452
FspBI CTAG 1 cut(s) 384
GluI GCNGC 4 cut(s) 186, 290, 367, 452
GsaI CCCAGC 1 cut(s) 43
HaeIII GGCC 2 cut(s) 132, 471
HapII CCGG 1 cut(s) 455
Hin1II CATG 4 cut(s) 296, 391, 479, 509
HpaII CCGG 1 cut(s) 455
HphI GGTGA 1 cut(s) 165
HpyCH4V TGCA 4 cut(s) 188, 316, 343, 505
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 289, 302
HpyF3I CTNAG 2 cut(s) 86, 306
Hsp92II CATG 4 cut(s) 296, 391, 479, 509
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 2 cut(s) 170, 412
Lsp1109I GCAGC 4 cut(s) 172, 301, 378, 463
LweI GCATC 3 cut(s) 189, 370, 378
MaeI CTAG 1 cut(s) 384
MaeIII GTNAC 1 cut(s) 418
MalI GATC 2 cut(s) 172, 414
MboI GATC 2 cut(s) 170, 412
MboII GAAGA 4 cut(s) 93, 170, 454, 456
MluCI AATT 2 cut(s) 46, 139
MnlI CCTC 5 cut(s) 186, 213, 345, 398, 432
Mph1103I ATGCAT 1 cut(s) 507
MseI TTAA 1 cut(s) 233
MslI CAYNNNNRTG 1 cut(s) 374
MspI CCGG 1 cut(s) 455
MspR9I CCNGG 1 cut(s) 435
Mva1269I GAATGC 1 cut(s) 96
MvaI CCWGG 1 cut(s) 435
MwoI GCNNNNNNNGC 3 cut(s) 40, 289, 302
NdeII GATC 2 cut(s) 170, 412
NheI GCTAGC 1 cut(s) 383
NlaIII CATG 4 cut(s) 296, 391, 479, 509
NmuCI GTSAC 1 cut(s) 418
NsiI ATGCAT 1 cut(s) 507
NspI RCATGY 2 cut(s) 296, 391
PaeI GCATGC 1 cut(s) 296
PctI GAATGC 1 cut(s) 96
PkrI GCNGC 4 cut(s) 187, 291, 368, 453
Psp6I CCWGG 1 cut(s) 433
PspFI CCCAGC 1 cut(s) 39
PspGI CCWGG 1 cut(s) 433
PstI CTGCAG 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 374
SaqAI TTAA 1 cut(s) 233
SatI GCNGC 4 cut(s) 186, 290, 367, 452
Sau3AI GATC 2 cut(s) 170, 412
ScrFI CCNGG 1 cut(s) 435
SetI ASST 5 cut(s) 178, 187, 285, 420, 533
SfaNI GCATC 3 cut(s) 189, 370, 378
SfcI CTRYAG 2 cut(s) 186, 248
SmiMI CAYNNNNRTG 1 cut(s) 374
SphI GCATGC 1 cut(s) 296
Sse9I AATT 2 cut(s) 46, 139
SspMI CTAG 1 cut(s) 384
StyD4I CCNGG 1 cut(s) 433
TaqI TCGA 3 cut(s) 106, 392, 403
TasI AATT 2 cut(s) 46, 139
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 1 cut(s) 418
TseI GCWGC 4 cut(s) 185, 289, 366, 451
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 1 cut(s) 242
TspGWI ACGGA 1 cut(s) 133
TspRI CASTG 1 cut(s) 73
XapI RAATTY 2 cut(s) 46, 139
XceI RCATGY 2 cut(s) 296, 391
XspI CTAG 1 cut(s) 384
Zsp2I ATGCAT 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.