Rh3DG083900

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0010597
Physical Location & Seq
Forward (+)
6521999 .. 6523326
1328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG083900.1

Sequence Viewer

Length: 456 bp
ATGGTTCACAGCTTTATTAGGTCTGGATCAACTTCGCTCTGGACTTCTTCAGCAACAAAAACCTTTTATACAAGCTCCCAGCCCTTTCATCAGCTTCAAATGCTGACACCACAACACCAGCAACAACTTATACTTGCCCAGCAAAATTTGACATCCCCATCTGCCAGTGATGATAGTAGAAGACTAAGAATGCTATTGAATAATCGAAGTATGGGGCTTGGAAAGGATGGCCTTTCAAATTCCGTTGGCGATGTAGTGCCAAATGTAGGATCACCTCTTCAAGCTGCAGGCTCTATGATGCCTCGTGGAGATACAGATATGCTGATAAAGGTCACAAAAAACCAGCCTGGGAGGAAGAGAAAGCAGCCGGTGTCATCTTCAGGCCATCATGTGTCCCCCTGTGGCTTACGCTCAATACATGAGAATAATATTAATGGAGACTGGTTTAGCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

151

Amino Acids

16.54

Weight (kDa)

10.35

Isoelectric Point (pI)

68.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 34, 277
AcsI RAATTY 2 cut(s) 145, 238
AcuI CTGAAG 2 cut(s) 33, 363
AfiI CCNNNNNNNGG 1 cut(s) 266
AgsI TTSAA 4 cut(s) 98, 199, 237, 281
AjnI CCWGG 1 cut(s) 346
AluBI AGCT 5 cut(s) 12, 75, 94, 284, 450
AluI AGCT 5 cut(s) 12, 75, 94, 284, 450
Alw26I GTCTC 1 cut(s) 432
AlwI GGATC 2 cut(s) 34, 277
AoxI GGCC 2 cut(s) 229, 382
ApeKI GCWGC 2 cut(s) 284, 364
ApoI RAATTY 2 cut(s) 145, 238
AseI ATTAAT 1 cut(s) 432
AsuHPI GGTGA 1 cut(s) 264
BauI CACGAG 1 cut(s) 303
BbsI GAAGAC 1 cut(s) 187
BbvI GCAGC 2 cut(s) 271, 376
BccI CCATC 3 cut(s) 166, 221, 393
BciT130I CCWGG 1 cut(s) 348
BcoDI GTCTC 1 cut(s) 432
BfmI CTRYAG 1 cut(s) 285
BisI GCNGC 2 cut(s) 285, 365
BlsI GCNGC 2 cut(s) 286, 366
Bme1390I CCNGG 1 cut(s) 348
BmrFI CCNGG 1 cut(s) 348
BmsI GCATC 1 cut(s) 288
BpiI GAAGAC 1 cut(s) 187
BsaJI CCNNGG 1 cut(s) 347
Bsc4I CCNNNNNNNGG 1 cut(s) 266
Bse118I RCCGGY 1 cut(s) 367
Bse1I ACTGG 2 cut(s) 165, 446
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 1 cut(s) 347
BseGI GGATG 2 cut(s) 152, 232
BseLI CCNNNNNNNGG 1 cut(s) 266
BseNI ACTGG 2 cut(s) 165, 446
BseXI GCAGC 2 cut(s) 271, 376
BseYI CCCAGC 2 cut(s) 78, 138
BshFI GGCC 2 cut(s) 231, 384
BsiSI CCGG 1 cut(s) 368
BslFI GGGAC 1 cut(s) 379
BslI CCNNNNNNNGG 1 cut(s) 266
BsmAI GTCTC 1 cut(s) 432
BsmFI GGGAC 1 cut(s) 379
BsmI GAATGC 1 cut(s) 195
BsnI GGCC 2 cut(s) 231, 384
Bsp143I GATC 2 cut(s) 26, 269
BspANI GGCC 2 cut(s) 231, 384
BspMAI CTGCAG 1 cut(s) 289
BspPI GGATC 2 cut(s) 34, 277
BsrFI RCCGGY 1 cut(s) 367
BsrI ACTGG 2 cut(s) 165, 446
BssAI RCCGGY 1 cut(s) 367
BssECI CCNNGG 1 cut(s) 347
BssMI GATC 2 cut(s) 26, 269
BssSI CACGAG 1 cut(s) 303
Bst2BI CACGAG 1 cut(s) 303
Bst2UI CCWGG 1 cut(s) 348
Bst6I CTCTTC 2 cut(s) 282, 350
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 1 cut(s) 185
BstF5I GGATG 2 cut(s) 152, 232
BstKTI GATC 2 cut(s) 29, 272
BstMAI GTCTC 1 cut(s) 432
BstMBI GATC 2 cut(s) 26, 269
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstNI CCWGG 1 cut(s) 348
BstSCI CCNGG 1 cut(s) 346
BstSFI CTRYAG 1 cut(s) 285
BstV1I GCAGC 2 cut(s) 271, 376
BstV2I GAAGAC 1 cut(s) 187
BsuRI GGCC 2 cut(s) 231, 384
BtgZI GCGATG 1 cut(s) 264
BtsCI GGATG 2 cut(s) 152, 232
BtsIMutI CAGTG 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 289
Cfr10I RCCGGY 1 cut(s) 367
CviAII CATG 2 cut(s) 389, 419
DdeI CTNAG 1 cut(s) 185
DpnI GATC 2 cut(s) 28, 271
DpnII GATC 2 cut(s) 26, 269
Eam1104I CTCTTC 2 cut(s) 282, 350
EarI CTCTTC 2 cut(s) 282, 350
Eco57I CTGAAG 2 cut(s) 33, 363
EcoRII CCWGG 1 cut(s) 346
FaeI CATG 2 cut(s) 392, 422
FaiI YATR 7 cut(s) 69, 131, 212, 296, 320, 390, 420
FaqI GGGAC 1 cut(s) 379
FatI CATG 2 cut(s) 388, 418
Fnu4HI GCNGC 2 cut(s) 285, 365
FokI GGATG 2 cut(s) 139, 239
Fsp4HI GCNGC 2 cut(s) 285, 365
GluI GCNGC 2 cut(s) 285, 365
GsaI CCCAGC 2 cut(s) 82, 142
HaeIII GGCC 2 cut(s) 231, 384
HapII CCGG 1 cut(s) 368
Hin1II CATG 2 cut(s) 392, 422
HpaII CCGG 1 cut(s) 368
HphI GGTGA 1 cut(s) 264
Hpy166II GTNNAC 1 cut(s) 7
Hpy188III TCNNGA 2 cut(s) 24, 40
Hpy8I GTNNAC 1 cut(s) 7
HpyCH4V TGCA 1 cut(s) 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 1 cut(s) 185
Hsp92II CATG 2 cut(s) 392, 422
Kzo9I GATC 2 cut(s) 26, 269
LmnI GCTCC 1 cut(s) 80
Lsp1109I GCAGC 2 cut(s) 271, 376
LweI GCATC 1 cut(s) 288
MaeIII GTNAC 1 cut(s) 331
MalI GATC 2 cut(s) 28, 271
MboI GATC 2 cut(s) 26, 269
MboII GAAGA 5 cut(s) 39, 192, 269, 367, 369
MluCI AATT 2 cut(s) 145, 238
MnlI CCTC 3 cut(s) 285, 312, 345
MseI TTAA 1 cut(s) 432
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 1 cut(s) 348
Mva1269I GAATGC 1 cut(s) 195
MvaI CCWGG 1 cut(s) 348
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeII GATC 2 cut(s) 26, 269
NlaIII CATG 2 cut(s) 392, 422
NmuCI GTSAC 1 cut(s) 331
PctI GAATGC 1 cut(s) 195
PkrI GCNGC 2 cut(s) 286, 366
PshBI ATTAAT 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 346
PspFI CCCAGC 2 cut(s) 78, 138
PspGI CCWGG 1 cut(s) 346
PstI CTGCAG 1 cut(s) 289
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 2 cut(s) 285, 365
Sau3AI GATC 2 cut(s) 26, 269
ScrFI CCNGG 1 cut(s) 348
SetI ASST 9 cut(s) 14, 23, 65, 77, 96, 277, 286, 333, 452
SfaNI GCATC 1 cut(s) 288
SfcI CTRYAG 1 cut(s) 285
Sse9I AATT 2 cut(s) 145, 238
SspI AATATT 1 cut(s) 430
StyD4I CCNGG 1 cut(s) 346
TaqI TCGA 1 cut(s) 205
TasI AATT 2 cut(s) 145, 238
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 2 cut(s) 284, 364
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 1 cut(s) 77
TspGWI ACGGA 1 cut(s) 232
TspRI CASTG 1 cut(s) 172
VspI ATTAAT 1 cut(s) 432
XapI RAATTY 2 cut(s) 145, 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.