Rh2DG676700

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0010597
Physical Location & Seq
Reverse (-)
89735048 .. 89743785
8738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG676700.1

Sequence Viewer

Length: 993 bp
ATGGTCTATACTTCTGGTAACAGCTTGGGACACTTCGACTGCTGGAGTGAAATTGTCACAACGTCACACAGCACCAACCAGCTCAACCTCAAAGAGGGGAGGAGATCAACTACTACCTTATTGAAAATGGGTTATCTAAAGACTTATAGCTGCAGATCCAAGGAAAGGGGGAGGAGACAGAGGTCTGGATCAACTTCGCTCTGGACTTCTTCAGCAACAAATACCTTTTATACAAGCTCCCAGCCCTTTCATCAGCTTCAAATGCTGACACCACAACACCAGCAACAACTTATACTTGCCCAGCAAAATTTGACATCCCCATCTGCCAGTGATGATAGTAGAAGACTAAGAATGCTATTGAATAATCGAAGTATGGGGCTTGGAAAGGATGGCCTTTCAAATTCCGTTGGCGATGTAGTGCCAAATGTAGGATCACCTCTTCAAGCTGCAGGCTCTATGATGCCTCGTGGAGATACAGATATGCTGATGAAGGCTCCTAACAGTCTTGTCATTGATTATAAGGTCACAAAAAACCAGCCTGGGAGGAAGAGAAAGCAGCCGGTGTCATCTTCAGGCCATCATGTGTCCCCCTGTGGCTTACGCTCAATACATGAGAATAATATTAATGGAGACTGGTTTAACTTATCCAGATTTCTTCTCATAATCTCCTGGACTGGGCTAAGAGACTACAGCTGGTCGTCGGTGACGAAATTCCGTGTTGCTCCCCGGTTCACTGCGGAGTGGGTTTTGGCGTCTGCGAGGAAGACTCTAATCAACTCGGGGTCTTGCAAGTTGGGGCAGATCGGTTCTGGCCTGGTTTGTCGAACGTGCTGCGTTGGTGGTCCGGTTAGCTTGGATATAGAGGGGAGGCAATCTATGGCCTTCAGGAGTAATCTACTGCCGAATCTTGCAACTAATATGGTGTTGCTCATAGTGGGTTCCTGGGCTTGTAGTTGGGCCTGGGGCTCTGGGCAAATTCTGAGTTTGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

330

Amino Acids

36.33

Weight (kDa)

10.08

Isoelectric Point (pI)

50.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 519
AciI CCGC 1 cut(s) 737
AclWI GGATC 3 cut(s) 150, 196, 439
AcsI RAATTY 4 cut(s) 307, 400, 710, 975
AcuI CTGAAG 3 cut(s) 195, 555, 868
AcyI GRCGYC 1 cut(s) 752
AfiI CCNNNNNNNGG 4 cut(s) 94, 165, 428, 675
AgsI TTSAA 5 cut(s) 124, 260, 361, 399, 443
AjnI CCWGG 5 cut(s) 538, 668, 813, 941, 959
AluBI AGCT 9 cut(s) 24, 82, 150, 237, 256, 446, 693, 852, 990
AluI AGCT 9 cut(s) 24, 82, 150, 237, 256, 446, 693, 852, 990
Alw26I GTCTC 3 cut(s) 169, 624, 678
AlwI GGATC 3 cut(s) 150, 196, 439
Ama87I CYCGRG 1 cut(s) 778
AoxI GGCC 5 cut(s) 391, 574, 811, 879, 957
ApeKI GCWGC 4 cut(s) 150, 446, 556, 831
ApoI RAATTY 4 cut(s) 307, 400, 710, 975
AseI ATTAAT 1 cut(s) 624
AspS9I GGNCC 2 cut(s) 842, 957
AsuC2I CCSGG 1 cut(s) 727
AsuHPI GGTGA 2 cut(s) 426, 715
AvaI CYCGRG 1 cut(s) 778
AvaII GGWCC 1 cut(s) 842
BanII GRGCYC 1 cut(s) 968
BauI CACGAG 1 cut(s) 465
BbsI GAAGAC 2 cut(s) 349, 770
BbvI GCAGC 4 cut(s) 137, 433, 568, 818
BccI CCATC 3 cut(s) 328, 383, 585
BcgI CGANNNNNNTGC 2 cut(s) 813, 847
BciT130I CCWGG 5 cut(s) 540, 670, 815, 943, 961
BcnI CCSGG 1 cut(s) 727
BcoDI GTCTC 3 cut(s) 169, 624, 678
BfaI CTAG 1 cut(s) 991
BfmI CTRYAG 3 cut(s) 151, 447, 688
BisI GCNGC 4 cut(s) 151, 447, 557, 832
BlsI GCNGC 4 cut(s) 152, 448, 558, 833
Bme1390I CCNGG 6 cut(s) 540, 670, 727, 815, 943, 961
Bme18I GGWCC 1 cut(s) 842
BmeT110I CYCGRG 1 cut(s) 778
BmgT120I GGNCC 2 cut(s) 842, 957
BmiI GGNNCC 2 cut(s) 495, 940
BmrFI CCNGG 6 cut(s) 540, 670, 727, 815, 943, 961
BmrI ACTGGG 1 cut(s) 684
BmsI GCATC 1 cut(s) 450
BmuI ACTGGG 1 cut(s) 684
BoxI GACNNNNGTC 1 cut(s) 181
BpiI GAAGAC 2 cut(s) 349, 770
BplI GAGNNNNNCTC 2 cut(s) 751, 783
BpmI CTGGAG 1 cut(s) 64
BpuMI CCSGG 1 cut(s) 727
BsaHI GRCGYC 1 cut(s) 752
BsaJI CCNNGG 5 cut(s) 159, 539, 725, 942, 960
BsaWI WCCGGW 1 cut(s) 844
Bsc4I CCNNNNNNNGG 4 cut(s) 94, 165, 428, 675
Bse118I RCCGGY 1 cut(s) 559
Bse1I ACTGG 3 cut(s) 327, 638, 679
BseBI CCWGG 5 cut(s) 540, 670, 815, 943, 961
BseDI CCNNGG 5 cut(s) 159, 539, 725, 942, 960
BseGI GGATG 2 cut(s) 314, 394
BseLI CCNNNNNNNGG 4 cut(s) 94, 165, 428, 675
BseMII CTCAG 1 cut(s) 971
BseNI ACTGG 3 cut(s) 327, 638, 679
BseRI GAGGAG 2 cut(s) 115, 187
BseXI GCAGC 4 cut(s) 137, 433, 568, 818
BseYI CCCAGC 2 cut(s) 240, 300
BshFI GGCC 5 cut(s) 393, 576, 813, 881, 959
BsiHKCI CYCGRG 1 cut(s) 778
BsiSI CCGG 3 cut(s) 560, 727, 845
BslFI GGGAC 2 cut(s) 42, 571
BslI CCNNNNNNNGG 4 cut(s) 94, 165, 428, 675
BsmAI GTCTC 3 cut(s) 169, 624, 678
BsmFI GGGAC 2 cut(s) 42, 571
BsmI GAATGC 1 cut(s) 357
BsnI GGCC 5 cut(s) 393, 576, 813, 881, 959
BsoBI CYCGRG 1 cut(s) 778
Bsp1286I GDGCHC 1 cut(s) 968
Bsp143I GATC 5 cut(s) 104, 155, 188, 431, 801
BspACI CCGC 1 cut(s) 737
BspANI GGCC 5 cut(s) 393, 576, 813, 881, 959
BspCNI CTCAG 1 cut(s) 972
BspLI GGNNCC 2 cut(s) 495, 940
BspMAI CTGCAG 2 cut(s) 155, 451
BspPI GGATC 3 cut(s) 150, 196, 439
BsrFI RCCGGY 1 cut(s) 559
BsrI ACTGG 3 cut(s) 327, 638, 679
BssAI RCCGGY 1 cut(s) 559
BssECI CCNNGG 5 cut(s) 159, 539, 725, 942, 960
BssMI GATC 5 cut(s) 104, 155, 188, 431, 801
BssNI GRCGYC 1 cut(s) 752
BssSI CACGAG 1 cut(s) 465
BssT1I CCWWGG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 465
Bst2UI CCWGG 5 cut(s) 540, 670, 815, 943, 961
Bst4CI ACNGT 1 cut(s) 503
Bst6I CTCTTC 2 cut(s) 444, 542
BstACI GRCGYC 1 cut(s) 752
BstC8I GCNNGC 1 cut(s) 451
BstDEI CTNAG 3 cut(s) 347, 680, 980
BstENI CCTNNNNNAGG 1 cut(s) 92
BstF5I GGATG 2 cut(s) 314, 394
BstKTI GATC 5 cut(s) 107, 158, 191, 434, 804
BstMAI GTCTC 3 cut(s) 169, 624, 678
BstMBI GATC 5 cut(s) 104, 155, 188, 431, 801
BstMWI GCNNNNNNNGC 1 cut(s) 262
BstNI CCWGG 5 cut(s) 540, 670, 815, 943, 961
BstPAI GACNNNNGTC 1 cut(s) 181
BstSCI CCNGG 6 cut(s) 538, 668, 725, 813, 941, 959
BstSFI CTRYAG 3 cut(s) 151, 447, 688
BstV1I GCAGC 4 cut(s) 137, 433, 568, 818
BstV2I GAAGAC 2 cut(s) 349, 770
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BsuRI GGCC 5 cut(s) 393, 576, 813, 881, 959
BtgZI GCGATG 1 cut(s) 426
BtsCI GGATG 2 cut(s) 314, 394
BtsI GCAGTG 1 cut(s) 732
BtsIMutI CAGTG 2 cut(s) 334, 732
Cac8I GCNNGC 1 cut(s) 451
Cfr10I RCCGGY 1 cut(s) 559
Cfr13I GGNCC 2 cut(s) 842, 957
CseI GACGC 1 cut(s) 741
CviAII CATG 2 cut(s) 581, 611
DdeI CTNAG 3 cut(s) 347, 680, 980
DpnI GATC 5 cut(s) 106, 157, 190, 433, 803
DpnII GATC 5 cut(s) 104, 155, 188, 431, 801
Eam1104I CTCTTC 2 cut(s) 444, 542
EarI CTCTTC 2 cut(s) 444, 542
Eco130I CCWWGG 1 cut(s) 159
Eco24I GRGCYC 1 cut(s) 968
Eco47I GGWCC 1 cut(s) 842
Eco57I CTGAAG 3 cut(s) 195, 555, 868
Eco88I CYCGRG 1 cut(s) 778
EcoNI CCTNNNNNAGG 1 cut(s) 92
EcoRII CCWGG 5 cut(s) 538, 668, 813, 941, 959
EcoT14I CCWWGG 1 cut(s) 159
EcoT38I GRGCYC 1 cut(s) 968
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 2 cut(s) 584, 614
FaqI GGGAC 2 cut(s) 42, 571
FatI CATG 2 cut(s) 580, 610
Fnu4HI GCNGC 4 cut(s) 151, 447, 557, 832
FokI GGATG 2 cut(s) 301, 401
FriOI GRGCYC 1 cut(s) 968
Fsp4HI GCNGC 4 cut(s) 151, 447, 557, 832
FspBI CTAG 1 cut(s) 991
GluI GCNGC 4 cut(s) 151, 447, 557, 832
GsaI CCCAGC 2 cut(s) 244, 304
GsuI CTGGAG 1 cut(s) 64
HaeIII GGCC 5 cut(s) 393, 576, 813, 881, 959
HapII CCGG 3 cut(s) 560, 727, 845
HgaI GACGC 1 cut(s) 741
Hin1I GRCGYC 1 cut(s) 752
Hin1II CATG 2 cut(s) 584, 614
HinfI GANTC 2 cut(s) 766, 904
HpaII CCGG 3 cut(s) 560, 727, 845
HphI GGTGA 2 cut(s) 426, 715
Hpy166II GTNNAC 1 cut(s) 732
Hpy188I TCNGA 1 cut(s) 981
Hpy188III TCNNGA 4 cut(s) 186, 202, 648, 886
Hpy8I GTNNAC 1 cut(s) 732
Hpy99I CGWCG 1 cut(s) 703
HpyAV CCTTC 2 cut(s) 484, 892
HpyCH4III ACNGT 1 cut(s) 503
HpyCH4IV ACGT 2 cut(s) 62, 827
HpyCH4V TGCA 4 cut(s) 153, 449, 789, 911
HpyF10VI GCNNNNNNNGC 1 cut(s) 262
HpyF3I CTNAG 3 cut(s) 347, 680, 980
HpySE526I ACGT 2 cut(s) 62, 827
Hsp92I GRCGYC 1 cut(s) 752
Hsp92II CATG 2 cut(s) 584, 614
Kzo9I GATC 5 cut(s) 104, 155, 188, 431, 801
LmnI GCTCC 3 cut(s) 242, 499, 727
Lsp1109I GCAGC 4 cut(s) 137, 433, 568, 818
LweI GCATC 1 cut(s) 450
MaeI CTAG 1 cut(s) 991
MaeII ACGT 2 cut(s) 62, 827
MaeIII GTNAC 5 cut(s) 17, 55, 63, 523, 703
MalI GATC 5 cut(s) 106, 157, 190, 433, 803
MboI GATC 5 cut(s) 104, 155, 188, 431, 801
MboII GAAGA 7 cut(s) 201, 354, 431, 559, 561, 647, 775
MflI RGATCY 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 968
MluCI AATT 5 cut(s) 51, 307, 400, 710, 975
MlyI GAGTC 1 cut(s) 760
MseI TTAA 2 cut(s) 624, 639
MspA1I CMGCKG 1 cut(s) 693
MspI CCGG 3 cut(s) 560, 727, 845
MspR9I CCNGG 6 cut(s) 540, 670, 727, 815, 943, 961
Mva1269I GAATGC 1 cut(s) 357
MvaI CCWGG 5 cut(s) 540, 670, 815, 943, 961
MwoI GCNNNNNNNGC 1 cut(s) 262
NciI CCSGG 1 cut(s) 727
NdeII GATC 5 cut(s) 104, 155, 188, 431, 801
NlaIII CATG 2 cut(s) 584, 614
NlaIV GGNNCC 2 cut(s) 495, 940
NmuCI GTSAC 4 cut(s) 55, 63, 523, 703
PcsI WCGNNNNNNNCGW 1 cut(s) 704
PctI GAATGC 1 cut(s) 357
PfeI GAWTC 1 cut(s) 904
PfoI TCCNGGA 1 cut(s) 668
PkrI GCNGC 4 cut(s) 152, 448, 558, 833
PleI GAGTC 1 cut(s) 760
PpsI GAGTC 1 cut(s) 760
PshAI GACNNNNGTC 1 cut(s) 181
PshBI ATTAAT 1 cut(s) 624
PsiI TTATAA 1 cut(s) 519
Psp6I CCWGG 5 cut(s) 538, 668, 813, 941, 959
PspFI CCCAGC 2 cut(s) 240, 300
PspGI CCWGG 5 cut(s) 538, 668, 813, 941, 959
PspN4I GGNNCC 2 cut(s) 495, 940
PspPI GGNCC 2 cut(s) 842, 957
PstI CTGCAG 2 cut(s) 155, 451
PsuI RGATCY 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 693
SaqAI TTAA 2 cut(s) 624, 639
SatI GCNGC 4 cut(s) 151, 447, 557, 832
Sau3AI GATC 5 cut(s) 104, 155, 188, 431, 801
Sau96I GGNCC 2 cut(s) 842, 957
SchI GAGTC 1 cut(s) 760
ScrFI CCNGG 6 cut(s) 540, 670, 727, 815, 943, 961
SduI GDGCHC 1 cut(s) 968
SfaNI GCATC 1 cut(s) 450
SfcI CTRYAG 3 cut(s) 151, 447, 688
SinI GGWCC 1 cut(s) 842
Sse9I AATT 5 cut(s) 51, 307, 400, 710, 975
SsiI CCGC 1 cut(s) 737
SspI AATATT 1 cut(s) 622
SspMI CTAG 1 cut(s) 991
StyD4I CCNGG 6 cut(s) 538, 668, 725, 813, 941, 959
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 1 cut(s) 503
TaiI ACGT 2 cut(s) 65, 830
TaqI TCGA 3 cut(s) 36, 367, 823
TasI AATT 5 cut(s) 51, 307, 400, 710, 975
TfiI GAWTC 1 cut(s) 904
Tru1I TTAA 2 cut(s) 624, 639
Tru9I TTAA 2 cut(s) 624, 639
TscAI CASTG 2 cut(s) 334, 739
TseFI GTSAC 4 cut(s) 55, 63, 523, 703
TseI GCWGC 4 cut(s) 150, 446, 556, 831
Tsp45I GTSAC 4 cut(s) 55, 63, 523, 703
TspDTI ATGAA 2 cut(s) 239, 503
TspGWI ACGGA 2 cut(s) 394, 704
TspRI CASTG 2 cut(s) 334, 739
VpaK11BI GGWCC 1 cut(s) 842
VspI ATTAAT 1 cut(s) 624
XagI CCTNNNNNAGG 1 cut(s) 92
XapI RAATTY 4 cut(s) 307, 400, 710, 975
XspI CTAG 1 cut(s) 991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.