Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010597

Physical Location & Seq

Genomic Coordinates Reverse (-)

26526441 .. 26529712

Gene Structure 3272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG226600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCTGACACCACAACACCAGCAACAACTTATGCTTGCCCAGCAAAATTTGACATCCCCATCTGCCAGTGATGATAGTAGAAGACTAAGAATGCTATTGAATAATCGAAGTATGGGGCTTGGAAAGGATGGCCTTTCAAATTCCGTTGGCGATGTAGTGCCAAATGTAGGATCACCTCTTCAAGCTGCAGGCTCTATGATGCCTCGTAGAGATACAGATATGCTGATGAAGGTCACAAAAAACCAGCCTGGGAGGAAGGGAAAGCAGCCGGTGTCATCTTCAGGCCATCATGTGTCCCCCTGTGGCTTACGCTCAATACATGAGAATAATGGAGACTGGTTTTGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LisH WD40

Protein Analysis

116

Amino Acids

12.64

Weight (kDa)

9.89

Isoelectric Point (pI)

65.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010597)

Species	Orthologous Gene IDs
malus_domestica	MD15G1103500.v1.1
rosa_chinensis	RchiOBHm_Chr4g0434291 RchiOBHm_Chr7g0208541
rosa_laevigata	RLG00000007690 RLG00000021293 RLG00000025144
rosa_multiflora	Rmu_sc0003466.1_g000002 Rmu_sc0020719.1_g000001
rosa_roxburghii	Rroxscaffold_5G00346340
rosa_samantha	Rh1CG081100 Rh2CG626300 Rh2DG425900 Rh2DG676700 Rh3DG083900 Rh5BG226600 Rh5CG194400 Rh5DG176700 Rh7AG239300 Rh7DG245300 Rh7DG427700
rosa_wichuraiana	Rw0G005260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	178
AcsI	RAATTY	2 cut(s)	46, 139
AcuI	CTGAAG	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	3 cut(s)	100, 138, 182
AjnI	CCWGG	1 cut(s)	247
AluBI	AGCT	1 cut(s)	185
AluI	AGCT	1 cut(s)	185
Alw26I	GTCTC	1 cut(s)	327
AlwI	GGATC	1 cut(s)	178
AoxI	GGCC	2 cut(s)	130, 283
ApeKI	GCWGC	2 cut(s)	185, 265
ApoI	RAATTY	2 cut(s)	46, 139
AsuHPI	GGTGA	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	88
BbvI	GCAGC	2 cut(s)	172, 277
BccI	CCATC	3 cut(s)	67, 122, 294
BciT130I	CCWGG	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	327
BfmI	CTRYAG	1 cut(s)	186
BisI	GCNGC	2 cut(s)	186, 266
BlsI	GCNGC	2 cut(s)	187, 267
Bme1390I	CCNGG	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	249
BmsI	GCATC	1 cut(s)	189
BpiI	GAAGAC	1 cut(s)	88
BsaJI	CCNNGG	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse118I	RCCGGY	1 cut(s)	268
Bse1I	ACTGG	2 cut(s)	66, 341
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	248
BseGI	GGATG	2 cut(s)	53, 133
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseNI	ACTGG	2 cut(s)	66, 341
BseXI	GCAGC	2 cut(s)	172, 277
BseYI	CCCAGC	1 cut(s)	39
BshFI	GGCC	2 cut(s)	132, 285
BsiSI	CCGG	1 cut(s)	269
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	327
BsmFI	GGGAC	1 cut(s)	280
BsmI	GAATGC	1 cut(s)	96
BsnI	GGCC	2 cut(s)	132, 285
Bsp143I	GATC	1 cut(s)	170
BspANI	GGCC	2 cut(s)	132, 285
BspMAI	CTGCAG	1 cut(s)	190
BspPI	GGATC	1 cut(s)	178
BsrFI	RCCGGY	1 cut(s)	268
BsrI	ACTGG	2 cut(s)	66, 341
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	248
BssMI	GATC	1 cut(s)	170
Bst2UI	CCWGG	1 cut(s)	249
Bst6I	CTCTTC	1 cut(s)	183
BstC8I	GCNNGC	2 cut(s)	36, 190
BstDEI	CTNAG	1 cut(s)	86
BstF5I	GGATG	2 cut(s)	53, 133
BstKTI	GATC	1 cut(s)	173
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	1 cut(s)	170
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstNI	CCWGG	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	247
BstSFI	CTRYAG	1 cut(s)	186
BstV1I	GCAGC	2 cut(s)	172, 277
BstV2I	GAAGAC	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	132, 285
BtgZI	GCGATG	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	53, 133
BtsIMutI	CAGTG	1 cut(s)	73
Cac8I	GCNNGC	2 cut(s)	36, 190
Cfr10I	RCCGGY	1 cut(s)	268
CviAII	CATG	2 cut(s)	290, 320
CviJI	RGCY	8 cut(s)	118, 132, 185, 192, 247, 268, 285, 306
CviKI_1	RGCY	8 cut(s)	118, 132, 185, 192, 247, 268, 285, 306
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	1 cut(s)	172
DpnII	GATC	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	247
FaeI	CATG	2 cut(s)	293, 323
FaiI	YATR	6 cut(s)	32, 113, 197, 221, 291, 321
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	2 cut(s)	289, 319
Fnu4HI	GCNGC	2 cut(s)	186, 266
FokI	GGATG	2 cut(s)	40, 140
Fsp4HI	GCNGC	2 cut(s)	186, 266
GluI	GCNGC	2 cut(s)	186, 266
GsaI	CCCAGC	1 cut(s)	43
HaeIII	GGCC	2 cut(s)	132, 285
HapII	CCGG	1 cut(s)	269
Hin1II	CATG	2 cut(s)	293, 323
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	1 cut(s)	165
HpyAV	CCTTC	2 cut(s)	223, 250
HpyCH4V	TGCA	1 cut(s)	188
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	1 cut(s)	86
Hsp92II	CATG	2 cut(s)	293, 323
Kzo9I	GATC	1 cut(s)	170
Lsp1109I	GCAGC	2 cut(s)	172, 277
LweI	GCATC	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	1 cut(s)	172
MboI	GATC	1 cut(s)	170
MboII	GAAGA	3 cut(s)	93, 170, 270
MluCI	AATT	2 cut(s)	46, 139
MnlI	CCTC	3 cut(s)	186, 213, 246
MspI	CCGG	1 cut(s)	269
MspR9I	CCNGG	1 cut(s)	249
Mva1269I	GAATGC	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	1 cut(s)	40
NdeII	GATC	1 cut(s)	170
NlaIII	CATG	2 cut(s)	293, 323
NmuCI	GTSAC	1 cut(s)	232
PctI	GAATGC	1 cut(s)	96
PkrI	GCNGC	2 cut(s)	187, 267
Psp6I	CCWGG	1 cut(s)	247
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	247
PstI	CTGCAG	1 cut(s)	190
SatI	GCNGC	2 cut(s)	186, 266
Sau3AI	GATC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	249
SetI	ASST	3 cut(s)	178, 187, 234
SfaNI	GCATC	1 cut(s)	189
SfcI	CTRYAG	1 cut(s)	186
Sse9I	AATT	2 cut(s)	46, 139
StyD4I	CCNGG	1 cut(s)	247
TaqI	TCGA	1 cut(s)	106
TasI	AATT	2 cut(s)	46, 139
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	2 cut(s)	185, 265
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	1 cut(s)	242
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	1 cut(s)	73
XapI	RAATTY	2 cut(s)	46, 139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.