Rh7DG245300

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0010597
Physical Location & Seq
Reverse (-)
25313474 .. 25314801
1328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG245300.1

Sequence Viewer

Length: 453 bp
ATGGGCATTCACAGCTTTATTAGGTTTGGATCAACTTCGCTCTGGACTTCTTCAGCAACAAAAACCTTTTATACAAGCTCCCAGCCCTTTCATCAGCTTCAAATGCTGACACCACAACACCAGCAACAACTTATGCTTGCCCAGCAAAATTTGACATCCCCATCTGCTAGTGATGATAGTAGAAGACTAAGAATGCTATTGAATAATCGAAGTATGGGGCTTGGAAAGGATGGCCTTTCAAATTCCGTTGGCGATGTAGTGCCAAATGTAGGATCACCTCTTCAAGCTGCAGGCTCTATGATGCCTCGTGGAGATACAGATATGCTGATGAAGGTCACAAAAAACCAGCCTGGGAGGAAGAGAAAGCAGCCGGTGTCATCTTCAGGCCATCATGTGTCCCCCTGTGGCTTACGCTCAATACATGAGAATAATGGAGACTGGTTTAGCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

150

Amino Acids

16.48

Weight (kDa)

10.35

Isoelectric Point (pI)

62.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 37, 280
AcsI RAATTY 2 cut(s) 148, 241
AcuI CTGAAG 2 cut(s) 36, 366
AfiI CCNNNNNNNGG 1 cut(s) 269
AgsI TTSAA 4 cut(s) 101, 202, 240, 284
AjnI CCWGG 1 cut(s) 349
AluBI AGCT 5 cut(s) 15, 78, 97, 287, 447
AluI AGCT 5 cut(s) 15, 78, 97, 287, 447
Alw26I GTCTC 1 cut(s) 429
AlwI GGATC 2 cut(s) 37, 280
AoxI GGCC 2 cut(s) 232, 385
ApeKI GCWGC 2 cut(s) 287, 367
ApoI RAATTY 2 cut(s) 148, 241
AsuHPI GGTGA 1 cut(s) 267
BauI CACGAG 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 190
BbvI GCAGC 2 cut(s) 274, 379
BccI CCATC 3 cut(s) 169, 224, 396
BciT130I CCWGG 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 429
BfaI CTAG 1 cut(s) 168
BfmI CTRYAG 1 cut(s) 288
BisI GCNGC 2 cut(s) 288, 368
BlsI GCNGC 2 cut(s) 289, 369
Bme1390I CCNGG 1 cut(s) 351
BmrFI CCNGG 1 cut(s) 351
BmsI GCATC 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 190
BsaJI CCNNGG 1 cut(s) 350
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse118I RCCGGY 1 cut(s) 370
Bse1I ACTGG 1 cut(s) 443
BseBI CCWGG 1 cut(s) 351
BseDI CCNNGG 1 cut(s) 350
BseGI GGATG 2 cut(s) 155, 235
BseLI CCNNNNNNNGG 1 cut(s) 269
BseNI ACTGG 1 cut(s) 443
BseXI GCAGC 2 cut(s) 274, 379
BseYI CCCAGC 2 cut(s) 81, 141
BshFI GGCC 2 cut(s) 234, 387
BsiSI CCGG 1 cut(s) 371
BslFI GGGAC 1 cut(s) 382
BslI CCNNNNNNNGG 1 cut(s) 269
BsmAI GTCTC 1 cut(s) 429
BsmFI GGGAC 1 cut(s) 382
BsmI GAATGC 2 cut(s) 6, 198
BsnI GGCC 2 cut(s) 234, 387
Bsp143I GATC 2 cut(s) 29, 272
BspANI GGCC 2 cut(s) 234, 387
BspMAI CTGCAG 1 cut(s) 292
BspPI GGATC 2 cut(s) 37, 280
BsrFI RCCGGY 1 cut(s) 370
BsrI ACTGG 1 cut(s) 443
BssAI RCCGGY 1 cut(s) 370
BssECI CCNNGG 1 cut(s) 350
BssMI GATC 2 cut(s) 29, 272
BssSI CACGAG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 351
Bst6I CTCTTC 2 cut(s) 285, 353
BstC8I GCNNGC 2 cut(s) 138, 292
BstDEI CTNAG 1 cut(s) 188
BstF5I GGATG 2 cut(s) 155, 235
BstKTI GATC 2 cut(s) 32, 275
BstMAI GTCTC 1 cut(s) 429
BstMBI GATC 2 cut(s) 29, 272
BstMWI GCNNNNNNNGC 3 cut(s) 12, 103, 142
BstNI CCWGG 1 cut(s) 351
BstSCI CCNGG 1 cut(s) 349
BstSFI CTRYAG 1 cut(s) 288
BstV1I GCAGC 2 cut(s) 274, 379
BstV2I GAAGAC 1 cut(s) 190
BsuRI GGCC 2 cut(s) 234, 387
BtgZI GCGATG 1 cut(s) 267
BtsCI GGATG 2 cut(s) 155, 235
Cac8I GCNNGC 2 cut(s) 138, 292
Cfr10I RCCGGY 1 cut(s) 370
CviAII CATG 2 cut(s) 392, 422
DdeI CTNAG 1 cut(s) 188
DpnI GATC 2 cut(s) 31, 274
DpnII GATC 2 cut(s) 29, 272
Eam1104I CTCTTC 2 cut(s) 285, 353
EarI CTCTTC 2 cut(s) 285, 353
Eco57I CTGAAG 2 cut(s) 36, 366
EcoRII CCWGG 1 cut(s) 349
FaeI CATG 2 cut(s) 395, 425
FaiI YATR 7 cut(s) 72, 134, 215, 299, 323, 393, 423
FaqI GGGAC 1 cut(s) 382
FatI CATG 2 cut(s) 391, 421
Fnu4HI GCNGC 2 cut(s) 288, 368
FokI GGATG 2 cut(s) 142, 242
Fsp4HI GCNGC 2 cut(s) 288, 368
FspBI CTAG 1 cut(s) 168
GluI GCNGC 2 cut(s) 288, 368
GsaI CCCAGC 2 cut(s) 85, 145
HaeIII GGCC 2 cut(s) 234, 387
HapII CCGG 1 cut(s) 371
Hin1II CATG 2 cut(s) 395, 425
HpaII CCGG 1 cut(s) 371
HphI GGTGA 1 cut(s) 267
Hpy188III TCNNGA 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 325
HpyCH4V TGCA 1 cut(s) 290
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 103, 142
HpyF3I CTNAG 1 cut(s) 188
Hsp92II CATG 2 cut(s) 395, 425
Kzo9I GATC 2 cut(s) 29, 272
LmnI GCTCC 1 cut(s) 83
Lsp1109I GCAGC 2 cut(s) 274, 379
LweI GCATC 1 cut(s) 291
MaeI CTAG 1 cut(s) 168
MaeIII GTNAC 1 cut(s) 334
MalI GATC 2 cut(s) 31, 274
MboI GATC 2 cut(s) 29, 272
MboII GAAGA 5 cut(s) 42, 195, 272, 370, 372
MluCI AATT 2 cut(s) 148, 241
MnlI CCTC 3 cut(s) 288, 315, 348
MspI CCGG 1 cut(s) 371
MspR9I CCNGG 1 cut(s) 351
Mva1269I GAATGC 2 cut(s) 6, 198
MvaI CCWGG 1 cut(s) 351
MwoI GCNNNNNNNGC 3 cut(s) 12, 103, 142
NdeII GATC 2 cut(s) 29, 272
NlaIII CATG 2 cut(s) 395, 425
NmuCI GTSAC 1 cut(s) 334
PctI GAATGC 2 cut(s) 6, 198
PkrI GCNGC 2 cut(s) 289, 369
Psp6I CCWGG 1 cut(s) 349
PspFI CCCAGC 2 cut(s) 81, 141
PspGI CCWGG 1 cut(s) 349
PstI CTGCAG 1 cut(s) 292
SatI GCNGC 2 cut(s) 288, 368
Sau3AI GATC 2 cut(s) 29, 272
ScrFI CCNGG 1 cut(s) 351
SetI ASST 9 cut(s) 17, 26, 68, 80, 99, 280, 289, 336, 449
SfaNI GCATC 1 cut(s) 291
SfcI CTRYAG 1 cut(s) 288
Sse9I AATT 2 cut(s) 148, 241
SspMI CTAG 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 349
TaqI TCGA 1 cut(s) 208
TasI AATT 2 cut(s) 148, 241
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 2 cut(s) 287, 367
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 2 cut(s) 80, 344
TspGWI ACGGA 1 cut(s) 235
XapI RAATTY 2 cut(s) 148, 241
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.