RLG00000008918

cyclic nucleotide-gated ion channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0008944
Physical Location & Seq
Forward (+)
42604709 .. 42610347
5639 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008918

Sequence Viewer

Length: 1206 bp
ATGGAGAAAATCACAGGTCCATGGAATGACTATAAGAGTCAACATTATGGTCATGGTTCTGAAGAGCGATTGGATTTGAGGTTTCTACTTGTTCTGGGCATGGAATTGAAGAAGGAGAGGCTTGTCAGTTCGTATGGGCAAAATTTGACAACGAGCACTTTTATTGGAGAGACATCATTTGCCATTCTCATTGCGATCGTAGGTCTTGTCTTATTTGCCCACTTAATTGGGAATATGCAGACCTATCTCCAATCAATTACCGTGAGGCTTGAGGAGTGGAGGCTTAAGAGAAGAGACACTGAGGAATGGATGGGGCATCGTCAACTCCCTGAAGATTTGAGACAACGTGTTCGACGGTTTGTCCAATACAAATGGCTGGCTACTCGAGGAGTTGATGAAGAAGCCATCCTTCATGGCTTGCCTGCTGATCTTCGCCGTGATATTCAACGCCACCTATGCTTAGATCTTGTTCGACGAGTACCCTTCTTCTCACAGATGGATGATCAGCTTCTTGATGCAATATGTGAACGTCTTGTTTCCTCCCTAAGCACAGCAGGCACTTATATTGTCAGAGAGGGTGATCCAGTGACAGAAATGCTTTTCATTATTAGAGGTACTCTCGATAGTTCTACTACCAATGGAGGCCGGACAGGTTTCTTCAATTCAATAACATTAAGACCTGGGGACTTCTGCGGTGAGGAGCTACTTGCATGGGCGCTGCTCCCAAAATCCACTGTCAACATGCCTTCTTCAACAAGAACAGTAATAGCACTTTCTGAAGTTGAAGCTTTTGCATTGCGAGCTGAAGATCTGAAATTTGTGGCCAACCAATTTAGACGCCTGCACAGCAAGAAGCTGCAGCACACCTTTCGGTTTTACTCTCACCACTGGAGAACATGGGCAGCCTGCTTCATACAGGCTGCTTGGCGTCGCCACAAGAGAAGGATGATGGCAAAAGATCTTAGCTTGAGGGAGTCCTTTGCTTTGGATGAGAAAGTAGCCTATGAGACAGCACAAGAGGAGGAGGAAGAAGAACATCATTCTGCTGGTTCAAATTCTTCGCAAGCAAAAATGAATCTTGGGGTCACACTACTGGCCTCAAGGTTTGCTGCAAACACAAGGAGGGGTGCTCAGAAGATCAAAGACGATATGCCCCGGTTACCAAAACCAGCAGAACCTGACTTCTCCACTGAGCCTGGATATTAG

Protein Analysis

402

Amino Acids

46.2

Weight (kDa)

8.58

Isoelectric Point (pI)

52.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
cNMP_binding PF00027 185 - 274 3.8e-09 Cyclic nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 693
AclWI GGATC 1 cut(s) 575
AcoI YGGCCR 1 cut(s) 822
AcsI RAATTY 3 cut(s) 142, 815, 1054
AcuI CTGAAG 4 cut(s) 81, 351, 798, 825
AcyI GRCGYC 2 cut(s) 838, 928
AfaI GTAC 2 cut(s) 480, 616
AflII CTTAAG 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 346
AgsI TTSAA 7 cut(s) 109, 446, 661, 666, 753, 785, 1053
AhdI GACNNNNNGTC 1 cut(s) 359
AjnI CCWGG 2 cut(s) 679, 1195
AluBI AGCT 6 cut(s) 508, 703, 788, 803, 856, 966
AluI AGCT 6 cut(s) 508, 703, 788, 803, 856, 966
Alw21I GWGCWC 2 cut(s) 158, 1132
Alw26I GTCTC 4 cut(s) 164, 288, 334, 1001
AlwI GGATC 1 cut(s) 575
AlwNI CAGNNNCTG 1 cut(s) 1178
Ama87I CYCGRG 1 cut(s) 384
AoxI GGCC 3 cut(s) 643, 822, 1095
ApeKI GCWGC 6 cut(s) 718, 856, 859, 902, 920, 1109
ApoI RAATTY 3 cut(s) 142, 815, 1054
ArsI GACNNNNNNTTYG 2 cut(s) 333, 365
AspLEI GCGC 1 cut(s) 718
AspS9I GGNCC 1 cut(s) 17
AsuC2I CCSGG 1 cut(s) 1156
AsuHPI GGTGA 3 cut(s) 590, 707, 875
AvaI CYCGRG 1 cut(s) 384
AvaII GGWCC 1 cut(s) 17
BalI TGGCCA 1 cut(s) 824
Bbv12I GWGCWC 2 cut(s) 158, 1132
BbvI GCAGC 6 cut(s) 705, 843, 871, 907, 914, 1096
BccI CCATC 4 cut(s) 304, 413, 490, 943
BceAI ACGGC 1 cut(s) 420
BcgI CGANNNNNNTGC 2 cut(s) 851, 885
BciT130I CCWGG 2 cut(s) 681, 1197
BclI TGATCA 1 cut(s) 502
BcnI CCSGG 1 cut(s) 1156
BcoDI GTCTC 4 cut(s) 164, 288, 334, 1001
BfmI CTRYAG 1 cut(s) 857
BfoI RGCGCY 1 cut(s) 719
BfrI CTTAAG 1 cut(s) 284
BglII AGATCT 3 cut(s) 463, 808, 958
BisI GCNGC 6 cut(s) 719, 857, 860, 903, 921, 1110
BlsI GCNGC 6 cut(s) 720, 858, 861, 904, 922, 1111
Bme1390I CCNGG 3 cut(s) 681, 1156, 1197
Bme18I GGWCC 1 cut(s) 17
BmeRI GACNNNNNGTC 1 cut(s) 359
BmeT110I CYCGRG 1 cut(s) 384
BmgT120I GGNCC 1 cut(s) 17
BmrFI CCNGG 3 cut(s) 681, 1156, 1197
BmsI GCATC 2 cut(s) 325, 505
BplI GAGNNNNNCTC 4 cut(s) 603, 635, 1114, 1146
BpmI CTGGAG 1 cut(s) 910
Bpu10I CCTNAGC 1 cut(s) 545
BpuEI CTTGAG 3 cut(s) 290, 988, 1084
BpuMI CCSGG 1 cut(s) 1156
BsaHI GRCGYC 2 cut(s) 838, 928
BsaJI CCNNGG 3 cut(s) 20, 680, 1154
Bse1I ACTGG 3 cut(s) 584, 893, 1098
Bse3DI GCAATG 2 cut(s) 189, 794
BseBI CCWGG 2 cut(s) 681, 1197
BseDI CCNNGG 3 cut(s) 20, 680, 1154
BseGI GGATG 5 cut(s) 315, 405, 505, 951, 994
BseMI GCAATG 2 cut(s) 189, 794
BseMII CTCAG 3 cut(s) 291, 1145, 1182
BseNI ACTGG 3 cut(s) 584, 893, 1098
BseRI GAGGAG 5 cut(s) 287, 402, 713, 1034, 1037
BseXI GCAGC 6 cut(s) 705, 843, 871, 907, 914, 1096
BsgI GTGCAG 1 cut(s) 827
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 3 cut(s) 645, 824, 1097
BsiEI CGRYCG 1 cut(s) 198
BsiHKAI GWGCWC 2 cut(s) 158, 1132
BsiHKCI CYCGRG 1 cut(s) 384
BsiSI CCGG 2 cut(s) 646, 1156
BslFI GGGAC 1 cut(s) 698
BsmAI GTCTC 4 cut(s) 164, 288, 334, 1001
BsmFI GGGAC 1 cut(s) 698
BsnI GGCC 3 cut(s) 645, 824, 1097
BsoBI CYCGRG 1 cut(s) 384
Bsp1286I GDGCHC 2 cut(s) 158, 1132
Bsp143I GATC 8 cut(s) 195, 427, 463, 502, 580, 808, 958, 1137
Bsp19I CCATGG 1 cut(s) 20
BspACI CCGC 1 cut(s) 693
BspANI GGCC 3 cut(s) 645, 824, 1097
BspCNI CTCAG 3 cut(s) 292, 1144, 1183
BspMAI CTGCAG 1 cut(s) 861
BspPI GGATC 1 cut(s) 575
BspQI GCTCTTC 1 cut(s) 57
BspTI CTTAAG 1 cut(s) 284
BsrDI GCAATG 2 cut(s) 189, 794
BsrI ACTGG 3 cut(s) 584, 893, 1098
BssECI CCNNGG 3 cut(s) 20, 680, 1154
BssMI GATC 8 cut(s) 195, 427, 463, 502, 580, 808, 958, 1137
BssNI GRCGYC 2 cut(s) 838, 928
BssT1I CCWWGG 1 cut(s) 20
Bst2UI CCWGG 2 cut(s) 681, 1197
Bst4CI ACNGT 4 cut(s) 262, 357, 736, 763
Bst6I CTCTTC 2 cut(s) 57, 286
BstACI GRCGYC 2 cut(s) 838, 928
BstAFI CTTAAG 1 cut(s) 284
BstC8I GCNNGC 8 cut(s) 378, 419, 423, 556, 801, 842, 907, 1065
BstDEI CTNAG 6 cut(s) 300, 460, 545, 962, 1131, 1191
BstDSI CCRYGG 1 cut(s) 20
BstEII GGTNACC 1 cut(s) 1158
BstF5I GGATG 5 cut(s) 315, 405, 505, 951, 994
BstH2I RGCGCY 1 cut(s) 719
BstHHI GCGC 1 cut(s) 718
BstKTI GATC 8 cut(s) 198, 430, 466, 505, 583, 811, 961, 1140
BstMAI GTCTC 4 cut(s) 164, 288, 334, 1001
BstMBI GATC 8 cut(s) 195, 427, 463, 502, 580, 808, 958, 1137
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 4 cut(s) 456, 555, 800, 846
BstNI CCWGG 2 cut(s) 681, 1197
BstNSI RCATGY 1 cut(s) 745
BstPI GGTNACC 1 cut(s) 1158
BstSCI CCNGG 3 cut(s) 679, 1154, 1195
BstSFI CTRYAG 1 cut(s) 857
BstV1I GCAGC 6 cut(s) 705, 843, 871, 907, 914, 1096
BstX2I RGATCY 3 cut(s) 463, 808, 958
BstXI CCANNNNNNTGG 1 cut(s) 227
BstYI RGATCY 3 cut(s) 463, 808, 958
BsuRI GGCC 3 cut(s) 645, 824, 1097
BtgI CCRYGG 1 cut(s) 20
BtsCI GGATG 5 cut(s) 315, 405, 505, 951, 994
BtsIMutI CAGTG 5 cut(s) 297, 591, 732, 886, 1188
Cac8I GCNNGC 8 cut(s) 378, 419, 423, 556, 801, 842, 907, 1065
CaiI CAGNNNCTG 1 cut(s) 1178
CfoI GCGC 1 cut(s) 718
Cfr13I GGNCC 1 cut(s) 17
CseI GACGC 2 cut(s) 846, 917
Csp6I GTAC 2 cut(s) 479, 615
CviAII CATG 7 cut(s) 21, 53, 100, 413, 711, 742, 897
CviQI GTAC 2 cut(s) 479, 615
DdeI CTNAG 6 cut(s) 300, 460, 545, 962, 1131, 1191
DpnI GATC 8 cut(s) 197, 429, 465, 504, 582, 810, 960, 1139
DpnII GATC 8 cut(s) 195, 427, 463, 502, 580, 808, 958, 1137
DriI GACNNNNNGTC 1 cut(s) 359
EaeI YGGCCR 1 cut(s) 822
Eam1104I CTCTTC 2 cut(s) 57, 286
Eam1105I GACNNNNNGTC 1 cut(s) 359
EarI CTCTTC 2 cut(s) 57, 286
Eco130I CCWWGG 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 17
Eco57I CTGAAG 4 cut(s) 81, 351, 798, 825
Eco88I CYCGRG 1 cut(s) 384
Eco91I GGTNACC 1 cut(s) 1158
EcoO65I GGTNACC 1 cut(s) 1158
EcoRII CCWGG 2 cut(s) 679, 1195
EcoT14I CCWWGG 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 7 cut(s) 24, 56, 103, 416, 714, 745, 900
FalI AAGNNNNNCTT 2 cut(s) 393, 425
FaqI GGGAC 1 cut(s) 698
FatI CATG 7 cut(s) 20, 52, 99, 412, 710, 741, 896
FbaI TGATCA 1 cut(s) 502
Fnu4HI GCNGC 6 cut(s) 719, 857, 860, 903, 921, 1110
FokI GGATG 5 cut(s) 322, 392, 512, 958, 1001
Fsp4HI GCNGC 6 cut(s) 719, 857, 860, 903, 921, 1110
GlaI GCGC 1 cut(s) 717
GluI GCNGC 6 cut(s) 719, 857, 860, 903, 921, 1110
GsuI CTGGAG 1 cut(s) 910
HaeII RGCGCY 1 cut(s) 719
HaeIII GGCC 3 cut(s) 645, 824, 1097
HapII CCGG 2 cut(s) 646, 1156
HgaI GACGC 2 cut(s) 846, 917
HhaI GCGC 1 cut(s) 718
Hin1I GRCGYC 2 cut(s) 838, 928
Hin1II CATG 7 cut(s) 24, 56, 103, 416, 714, 745, 900
Hin6I GCGC 1 cut(s) 716
HinP1I GCGC 1 cut(s) 716
HincII GTYRAC 3 cut(s) 41, 323, 739
HindII GTYRAC 3 cut(s) 41, 323, 739
HindIII AAGCTT 1 cut(s) 786
HinfI GANTC 3 cut(s) 37, 974, 1075
HpaII CCGG 2 cut(s) 646, 1156
HphI GGTGA 3 cut(s) 590, 707, 875
Hpy166II GTNNAC 4 cut(s) 41, 323, 527, 739
Hpy188I TCNGA 5 cut(s) 61, 572, 778, 813, 1134
Hpy188III TCNNGA 2 cut(s) 512, 620
Hpy8I GTNNAC 4 cut(s) 41, 323, 527, 739
Hpy99I CGWCG 3 cut(s) 357, 477, 933
HpyAV CCTTC 5 cut(s) 106, 419, 493, 756, 936
HpyCH4III ACNGT 4 cut(s) 262, 357, 736, 763
HpyCH4IV ACGT 2 cut(s) 346, 529
HpyCH4V TGCA 7 cut(s) 238, 518, 710, 794, 844, 859, 1112
HpyF10VI GCNNNNNNNGC 4 cut(s) 456, 555, 800, 846
HpyF3I CTNAG 6 cut(s) 300, 460, 545, 962, 1131, 1191
HpySE526I ACGT 2 cut(s) 346, 529
Hsp92I GRCGYC 2 cut(s) 838, 928
Hsp92II CATG 7 cut(s) 24, 56, 103, 416, 714, 745, 900
HspAI GCGC 1 cut(s) 716
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 8 cut(s) 195, 427, 463, 502, 580, 808, 958, 1137
LguI GCTCTTC 1 cut(s) 57
LmnI GCTCC 2 cut(s) 700, 726
Lsp1109I GCAGC 6 cut(s) 705, 843, 871, 907, 914, 1096
LweI GCATC 2 cut(s) 325, 505
MaeII ACGT 2 cut(s) 346, 529
MaeIII GTNAC 3 cut(s) 586, 1084, 1158
MalI GATC 8 cut(s) 197, 429, 465, 504, 582, 810, 960, 1139
MboI GATC 8 cut(s) 195, 427, 463, 502, 580, 808, 958, 1137
MflI RGATCY 3 cut(s) 463, 808, 958
MhlI GDGCHC 2 cut(s) 158, 1132
MlsI TGGCCA 1 cut(s) 824
MluCI AATT 8 cut(s) 104, 142, 225, 255, 661, 815, 830, 1054
MluNI TGGCCA 1 cut(s) 824
MlyI GAGTC 2 cut(s) 46, 983
Mox20I TGGCCA 1 cut(s) 824
MscI TGGCCA 1 cut(s) 824
MseI TTAA 3 cut(s) 224, 285, 674
Msp20I TGGCCA 1 cut(s) 824
MspCI CTTAAG 1 cut(s) 284
MspI CCGG 2 cut(s) 646, 1156
MspR9I CCNGG 3 cut(s) 681, 1156, 1197
MvaI CCWGG 2 cut(s) 681, 1197
MwoI GCNNNNNNNGC 4 cut(s) 456, 555, 800, 846
NciI CCSGG 1 cut(s) 1156
NcoI CCATGG 1 cut(s) 20
NdeII GATC 8 cut(s) 195, 427, 463, 502, 580, 808, 958, 1137
NlaIII CATG 7 cut(s) 24, 56, 103, 416, 714, 745, 900
NmuCI GTSAC 2 cut(s) 586, 1084
NspI RCATGY 1 cut(s) 745
PaeR7I CTCGAG 1 cut(s) 384
PciSI GCTCTTC 1 cut(s) 57
PfeI GAWTC 1 cut(s) 1075
PkrI GCNGC 6 cut(s) 720, 858, 861, 904, 922, 1111
Ple19I CGATCG 1 cut(s) 198
PleI GAGTC 2 cut(s) 45, 982
PpsI GAGTC 2 cut(s) 45, 982
Psp6I CCWGG 2 cut(s) 679, 1195
PspEI GGTNACC 1 cut(s) 1158
PspGI CCWGG 2 cut(s) 679, 1195
PspPI GGNCC 1 cut(s) 17
PspXI VCTCGAGB 1 cut(s) 384
PstI CTGCAG 1 cut(s) 861
PstNI CAGNNNCTG 1 cut(s) 1178
PsuI RGATCY 3 cut(s) 463, 808, 958
PvuI CGATCG 1 cut(s) 198
RsaI GTAC 2 cut(s) 480, 616
RsaNI GTAC 2 cut(s) 479, 615
SapI GCTCTTC 1 cut(s) 57
SaqAI TTAA 3 cut(s) 224, 285, 674
SatI GCNGC 6 cut(s) 719, 857, 860, 903, 921, 1110
Sau3AI GATC 8 cut(s) 195, 427, 463, 502, 580, 808, 958, 1137
Sau96I GGNCC 1 cut(s) 17
SchI GAGTC 2 cut(s) 46, 983
ScrFI CCNGG 3 cut(s) 681, 1156, 1197
SduI GDGCHC 2 cut(s) 158, 1132
SfaNI GCATC 2 cut(s) 325, 505
SfcI CTRYAG 1 cut(s) 857
Sfr274I CTCGAG 1 cut(s) 384
SinI GGWCC 1 cut(s) 17
SlaI CTCGAG 1 cut(s) 384
SmlI CTYRAG 5 cut(s) 269, 284, 384, 967, 1099
SmoI CTYRAG 5 cut(s) 269, 284, 384, 967, 1099
Sse9I AATT 8 cut(s) 104, 142, 225, 255, 661, 815, 830, 1054
SsiI CCGC 1 cut(s) 693
StyD4I CCNGG 3 cut(s) 679, 1154, 1195
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 4 cut(s) 262, 357, 736, 763
TaiI ACGT 2 cut(s) 349, 532
TaqI TCGA 4 cut(s) 352, 385, 472, 621
TasI AATT 8 cut(s) 104, 142, 225, 255, 661, 815, 830, 1054
TfiI GAWTC 1 cut(s) 1075
Tru1I TTAA 3 cut(s) 224, 285, 674
Tru9I TTAA 3 cut(s) 224, 285, 674
TscAI CASTG 5 cut(s) 304, 591, 739, 893, 1195
TseFI GTSAC 2 cut(s) 586, 1084
TseI GCWGC 6 cut(s) 718, 856, 859, 902, 920, 1109
Tsp45I GTSAC 2 cut(s) 586, 1084
TspDTI ATGAA 5 cut(s) 401, 411, 592, 901, 1088
TspRI CASTG 5 cut(s) 304, 591, 739, 893, 1195
Vha464I CTTAAG 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 17
XapI RAATTY 3 cut(s) 142, 815, 1054
XceI RCATGY 1 cut(s) 745
XhoI CTCGAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.