Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0008944

Physical Location & Seq

Genomic Coordinates Reverse (-)

26887970 .. 26893229

Gene Structure 5260 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG124000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2187 bp

ATGGAATTGAAGAAGGAGAGACTTGTCAGGTTTTATTCTGATAAAAAACACCATAGAGATTCTGTATGGGACAGAACTGAGCCATATCGTCTCGAAAAGTCGGCCTCTGCATATAGGGTTGCATCATCTTCGTTGCTCAAATCTGATAATGGACTAGTGGGGGGCACACGCAGATTTGCCGAAAATTTCAGAATCGGGCATTCAAAGGTGTTTCCAGAGGACCATGAGCCGTGGCGCAAGAGAATACTTGACCCAGGTAGTGAAATAGTGCTGCAATGGAATCGAGTTTTCATTGTCTCGTGCTTGGTTGCACTTTTTGTGGACCCATTGTACTTTTACTTGCCCATGGCTGAAGGGAGTGAAAACAGTTTTTGCATGAAGACAGACTTGAATTTGCGAATTATTGTGACCTTTTTCCGGACTATTGCGGATTTCTTCTATTTTCTGCACATGATTATAAAGTTTAGGACGGCTTATGTTGCACCAAGCTCCCGCGTTTTCGGGAGGGGTGAACTTGTCATGAACCCAAAGAAGATTGCACAGAGATACATTACATCCGACTTCTCCATTGATCTCATAGCCACGTTGCCACTTCCTCAGATAGTCATCTGGTTTATCATACCTCTCCAAAATGCTCAAACGGATAACACCAACAATGCACTAGCACTAATTGTTCTCCTCCAGTACATCCCCAGATTATATCTGATTTTCCCTTTAAGTTTGCAATTAATCAAAGCAACTGGAGTGGTGACAAAAACTGCTTGGGCAGGGGCTGCATATAATCTGCTATTATACATGCTGGCCAGCCATGTTTTAGGGGCAGCATGGTATTTGCTATCTATTGACCGGTATGCCTCATGCTGGAAAACATTTTGTAAAACGGAACTCAGCCCCGTAAAATGCTTGCCTAACTATTTAGATTGTAATACTGTTGACCAAGTTCCTCGCAAGACATGGGCAAATGGTACAAATGTTTTTCAAAATTGCAATCCTGAAAGTAACATATTCAAATATGGAATATTTGGAACTGCACTCACAAAACATGCTGTTTCGTCCAACTTCATCACAAAGTACTTCTATTGCTTATGGTGGGGTTTACAGCAACTAAGTTCGTATGGGCAAAATTTGACAACGAGCACTTTTATTGGAGAGACATCATTTGCCATTCTCATTGCGATCGTAGGTCTCGTCTTATTTGCCCACTTAATAGGGAATATGCAGACCTATCTCCAATCAATTACCGTGAGGCTTGAGGAGTGGAGGCTTAAGAGAAGAGACACTGAGGAATGGATGGGGCATCGTCAACTCCCTGAAGATTTGAGACAACGTGTTCGACGGTTTGACCAATACAAGTGGCTGGCTACTCGAGGAGTTGATGAAGAAGCCATCCTTCATGGCTTACCTGCTGATCTTCGCCATGATATTCAACGCCACCTATGCTTAGATCTTGTTCGACGAGTACCTTTCTTCTCACAGATGGATGATCAGCTTCTTGATGCAATATGTGAACGTCTTGTTTCTTCCCTAAGCACAGCAGGCACTTATATTGTCAGAGAGGGTGATCCAGTGACAGAAATGCTTTTCATTATTAGAGGTACTCTCAATAGTTCTACTACCAATGGAGGCCGGACAGGTTTCTTCAATTCAATAACATTAAGACCTGGGGACTTCTGCGGTGAGGAGCTACTTAATTGGGCGCTGCTCCCAAAATCCACTGTCAACATGCCTTCTTCAACAAGAACAGTAATAGCACTTTCTGAAGTTGAAGCTTTTGCATTGCGAGCTCAAGATCTGAAATTTGTGGCCAACCAATTCAGACGCCTGCACAGCAAGAAGCTGCAGCACACCTTTCGGTTTTACTCTCACCATTGGAGAACATACGCAGCCTGCTTCATACAGGCTGCTTGGTGTCGCCACAAGAGAAGGATGATGGCAAAAGATCTCAGCTTGAGGGAGTCCTTTGCTTTGGATGAGAAAGTAGCCTATGAGACAGCACAAGAGGAAGAAGAAGAAGAAGATCATTCTGCTGGTTCAAATTCTTCGCAAGCAAAAATGAATCTTGGGGTCACACTACTGGCCTCAAGGTTTGCTGCAAACACAAGGAGGGGTGCTCAGAAGATCAAAGATGATATGCCCAGGTTACCAAAACCTGCAGAACCTGACTTCTCCACTGAGCCTGAATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

728

Amino Acids

83.79

Weight (kDa)

9.05

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	93 - 416	4.1e-19	Ion transport protein
cNMP_binding	PF00027	512 - 601	1.2e-08	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30360
fragaria_vesca	FvH4_4g09800
malus_domestica	MD13G1261400.v1.1 MD16G1264100.v1.1
prunus_persica	Prupe.1G095400_v2.0.a1 Prupe.1G095400_v2.0.a1 Prupe.1G095400_v2.0.a1 Prupe.1G095400_v2.0.a1 Prupe.1G095400_v2.0.a1
pyrus_communis	pycom13g24930 pycom16g23260
rosa_chinensis	RchiOBHm_Chr4g0404621
rosa_laevigata	RLG00000008918
rosa_multiflora	Rmu_sc0002699.1_g000026
rosa_roxburghii	Rroxscaffold_5G00348770
rosa_rugosa	Rorug04G0048000
rosa_samantha	Rh4AG124000 Rh4BG117700 Rh4BG117800 Rh4CG132100 Rh4DG116900
rosa_wichuraiana	Rw4G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	458
Acc36I	ACCTGC	2 cut(s)	1411, 2158
AccII	CGCG	1 cut(s)	495
AccIII	TCCGGA	1 cut(s)	417
AciI	CCGC	3 cut(s)	428, 493, 1674
AclWI	GGATC	1 cut(s)	1556
AcoI	YGGCCR	2 cut(s)	801, 1803
AcsI	RAATTY	5 cut(s)	184, 391, 1123, 1796, 2035
AcuI	CTGAAG	3 cut(s)	372, 1332, 1779
AcyI	GRCGYC	1 cut(s)	1819
AfaI	GTAC	6 cut(s)	332, 686, 967, 1073, 1461, 1597
AfiI	CCNNNNNNNGG	2 cut(s)	417, 861
AflII	CTTAAG	1 cut(s)	1265
AflIII	ACRYGT	1 cut(s)	1327
AgeI	ACCGGT	1 cut(s)	846
AhlI	ACTAGT	1 cut(s)	154
AjnI	CCWGG	3 cut(s)	253, 1660, 2135
AluBI	AGCT	7 cut(s)	489, 1489, 1684, 1769, 1784, 1837, 1947
AluI	AGCT	7 cut(s)	489, 1489, 1684, 1769, 1784, 1837, 1947
Alw21I	GWGCWC	3 cut(s)	1139, 1786, 2113
Alw26I	GTCTC	8 cut(s)	13, 95, 301, 1145, 1190, 1269, 1315, 1982
AlwI	GGATC	1 cut(s)	1556
AlwNI	CAGNNNCTG	2 cut(s)	773, 2159
Ama87I	CYCGRG	1 cut(s)	1365
Aor13HI	TCCGGA	1 cut(s)	417
AoxI	GGCC	5 cut(s)	102, 801, 1624, 1803, 2076
ApeKI	GCWGC	9 cut(s)	271, 773, 821, 1699, 1837, 1840, 1883, 1901, 2090
ApoI	RAATTY	5 cut(s)	184, 391, 1123, 1796, 2035
ArsI	GACNNNNNNTTYG	2 cut(s)	1314, 1346
AseI	ATTAAT	1 cut(s)	728
AsiGI	ACCGGT	1 cut(s)	846
AspLEI	GCGC	2 cut(s)	237, 1699
AspS9I	GGNCC	2 cut(s)	220, 322
AsuHPI	GGTGA	5 cut(s)	521, 760, 1571, 1688, 1856
AvaI	CYCGRG	1 cut(s)	1365
AvaII	GGWCC	2 cut(s)	220, 322
BaeGI	GKGCMC	1 cut(s)	167
BaeI	ACNNNNGTAYC	2 cut(s)	957, 990
BalI	TGGCCA	2 cut(s)	803, 1805
BanII	GRGCYC	1 cut(s)	1786
BauI	CACGAG	1 cut(s)	298
BbsI	GAAGAC	1 cut(s)	386
Bbv12I	GWGCWC	3 cut(s)	1139, 1786, 2113
BbvI	GCAGC	9 cut(s)	258, 760, 833, 1686, 1824, 1852, 1888, 1895, 2077
BccI	CCATC	4 cut(s)	1285, 1394, 1471, 1924
BceAI	ACGGC	2 cut(s)	214, 486
BcgI	CGANNNNNNTGC	6 cut(s)	111, 145, 263, 297, 1832, 1866
BciT130I	CCWGG	3 cut(s)	255, 1662, 2137
BclI	TGATCA	1 cut(s)	1483
BcoDI	GTCTC	8 cut(s)	13, 95, 301, 1145, 1190, 1269, 1315, 1982
BcuI	ACTAGT	1 cut(s)	154
BfaI	CTAG	2 cut(s)	155, 662
BfmI	CTRYAG	2 cut(s)	1838, 2151
BfoI	RGCGCY	1 cut(s)	1700
BfrI	CTTAAG	1 cut(s)	1265
BfuAI	ACCTGC	2 cut(s)	1411, 2158
BglII	AGATCT	3 cut(s)	1444, 1789, 1939
BisI	GCNGC	9 cut(s)	272, 774, 822, 1700, 1838, 1841, 1884, 1902, 2091
BlsI	GCNGC	9 cut(s)	273, 775, 823, 1701, 1839, 1842, 1885, 1903, 2092
BmcAI	AGTACT	1 cut(s)	1073
Bme1390I	CCNGG	3 cut(s)	255, 1662, 2137
Bme18I	GGWCC	2 cut(s)	220, 322
BmeT110I	CYCGRG	1 cut(s)	1365
BmgT120I	GGNCC	2 cut(s)	220, 322
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	3 cut(s)	255, 1662, 2137
BmsI	GCATC	3 cut(s)	131, 1306, 1486
BpiI	GAAGAC	1 cut(s)	386
BplI	GAGNNNNNCTC	4 cut(s)	1584, 1616, 2095, 2127
BpmI	CTGGAG	2 cut(s)	665, 762
Bpu10I	CCTNAGC	1 cut(s)	1526
BpuEI	CTTGAG	4 cut(s)	1271, 1770, 1969, 2065
BsaBI	GATNNNNATC	1 cut(s)	605
BsaHI	GRCGYC	1 cut(s)	1819
BsaI	GGTCTC	1 cut(s)	1190
BsaJI	CCNNGG	5 cut(s)	230, 253, 345, 1661, 2135
BsaWI	WCCGGW	2 cut(s)	417, 846
Bsc4I	CCNNNNNNNGG	2 cut(s)	417, 861
Bse118I	RCCGGY	1 cut(s)	846
Bse1I	ACTGG	4 cut(s)	682, 745, 1565, 2079
Bse3DI	GCAATG	3 cut(s)	281, 1170, 1775
Bse8I	GATNNNNATC	1 cut(s)	605
BseAI	TCCGGA	1 cut(s)	417
BseBI	CCWGG	3 cut(s)	255, 1662, 2137
BseDI	CCNNGG	5 cut(s)	230, 253, 345, 1661, 2135
BseGI	GGATG	7 cut(s)	554, 687, 1296, 1386, 1486, 1932, 1975
BseJI	GATNNNNATC	1 cut(s)	605
BseLI	CCNNNNNNNGG	2 cut(s)	417, 861
BseMI	GCAATG	3 cut(s)	281, 1170, 1775
BseMII	CTCAG	7 cut(s)	69, 611, 901, 1272, 1957, 2126, 2163
BseNI	ACTGG	4 cut(s)	682, 745, 1565, 2079
BseRI	GAGGAG	4 cut(s)	668, 1268, 1383, 1694
BseSI	GKGCMC	1 cut(s)	167
BseXI	GCAGC	9 cut(s)	258, 760, 833, 1686, 1824, 1852, 1888, 1895, 2077
BsgI	GTGCAG	3 cut(s)	431, 1014, 1808
Bsh1236I	CGCG	1 cut(s)	495
Bsh1285I	CGRYCG	1 cut(s)	1179
BshFI	GGCC	5 cut(s)	104, 803, 1626, 1805, 2078
BshTI	ACCGGT	1 cut(s)	846
BsiEI	CGRYCG	1 cut(s)	1179
BsiHKAI	GWGCWC	3 cut(s)	1139, 1786, 2113
BsiHKCI	CYCGRG	1 cut(s)	1365
BsiSI	CCGG	3 cut(s)	418, 847, 1627
BslFI	GGGAC	2 cut(s)	83, 1679
BslI	CCNNNNNNNGG	2 cut(s)	417, 861
BsmAI	GTCTC	8 cut(s)	13, 95, 301, 1145, 1190, 1269, 1315, 1982
BsmBI	CGTCTC	1 cut(s)	95
BsmFI	GGGAC	2 cut(s)	83, 1679
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	5 cut(s)	104, 803, 1626, 1805, 2078
Bso31I	GGTCTC	1 cut(s)	1190
BsoBI	CYCGRG	1 cut(s)	1365
Bsp1286I	GDGCHC	4 cut(s)	167, 1139, 1786, 2113
Bsp13I	TCCGGA	1 cut(s)	417
Bsp19I	CCATGG	1 cut(s)	345
BspACI	CCGC	3 cut(s)	428, 493, 1674
BspANI	GGCC	5 cut(s)	104, 803, 1626, 1805, 2078
BspCNI	CTCAG	7 cut(s)	70, 610, 900, 1273, 1956, 2125, 2164
BspEI	TCCGGA	1 cut(s)	417
BspFNI	CGCG	1 cut(s)	495
BspHI	TCATGA	1 cut(s)	519
BspLI	GGNNCC	1 cut(s)	324
BspMAI	CTGCAG	2 cut(s)	1842, 2155
BspMI	ACCTGC	2 cut(s)	1411, 2158
BspPI	GGATC	1 cut(s)	1556
BspTI	CTTAAG	1 cut(s)	1265
BspTNI	GGTCTC	1 cut(s)	1190
BsrDI	GCAATG	3 cut(s)	281, 1170, 1775
BsrFI	RCCGGY	1 cut(s)	846
BsrI	ACTGG	4 cut(s)	682, 745, 1565, 2079
BssAI	RCCGGY	1 cut(s)	846
BssECI	CCNNGG	5 cut(s)	230, 253, 345, 1661, 2135
BssNI	GRCGYC	1 cut(s)	1819
BssSI	CACGAG	1 cut(s)	298
BssT1I	CCWWGG	1 cut(s)	345
Bst2BI	CACGAG	1 cut(s)	298
Bst2UI	CCWGG	3 cut(s)	255, 1662, 2137
Bst4CI	ACNGT	6 cut(s)	368, 931, 1243, 1338, 1717, 1744
Bst6I	CTCTTC	1 cut(s)	1267
BstACI	GRCGYC	1 cut(s)	1819
BstAFI	CTTAAG	1 cut(s)	1265
BstAPI	GCANNNNNTGC	1 cut(s)	773
BstC8I	GCNNGC	9 cut(s)	801, 805, 905, 1359, 1537, 1782, 1823, 1888, 2046
BstDSI	CCRYGG	2 cut(s)	230, 345
BstEII	GGTNACC	1 cut(s)	2139
BstF5I	GGATG	7 cut(s)	554, 687, 1296, 1386, 1486, 1932, 1975
BstFNI	CGCG	1 cut(s)	495
BstH2I	RGCGCY	1 cut(s)	1700
BstHHI	GCGC	2 cut(s)	237, 1699
BstMAI	GTCTC	8 cut(s)	13, 95, 301, 1145, 1190, 1269, 1315, 1982
BstMCI	CGRYCG	1 cut(s)	1179
BstMWI	GCNNNNNNNGC	6 cut(s)	479, 773, 1437, 1536, 1781, 1827
BstNI	CCWGG	3 cut(s)	255, 1662, 2137
BstNSI	RCATGY	3 cut(s)	799, 1046, 1726
BstPI	GGTNACC	1 cut(s)	2139
BstSCI	CCNGG	3 cut(s)	253, 1660, 2135
BstSFI	CTRYAG	2 cut(s)	1838, 2151
BstSLI	GKGCMC	1 cut(s)	167
BstUI	CGCG	1 cut(s)	495
BstV1I	GCAGC	9 cut(s)	258, 760, 833, 1686, 1824, 1852, 1888, 1895, 2077
BstV2I	GAAGAC	1 cut(s)	386
BstX2I	RGATCY	3 cut(s)	1444, 1789, 1939
BstYI	RGATCY	3 cut(s)	1444, 1789, 1939
BsuRI	GGCC	5 cut(s)	104, 803, 1626, 1805, 2078
BtgI	CCRYGG	2 cut(s)	230, 345
BtsCI	GGATG	7 cut(s)	554, 687, 1296, 1386, 1486, 1932, 1975
BtsIMutI	CAGTG	4 cut(s)	1278, 1572, 1713, 2169
BveI	ACCTGC	2 cut(s)	1411, 2158
Cac8I	GCNNGC	9 cut(s)	801, 805, 905, 1359, 1537, 1782, 1823, 1888, 2046
CaiI	CAGNNNCTG	2 cut(s)	773, 2159
CciI	TCATGA	1 cut(s)	519
CfoI	GCGC	2 cut(s)	237, 1699
Cfr10I	RCCGGY	1 cut(s)	846
Cfr13I	GGNCC	2 cut(s)	220, 322
CseI	GACGC	1 cut(s)	1827
Csp6I	GTAC	6 cut(s)	331, 685, 966, 1072, 1460, 1596
CspAI	ACCGGT	1 cut(s)	846
CspCI	CAANNNNNGTGG	4 cut(s)	726, 761, 1334, 1369
CviQI	GTAC	6 cut(s)	331, 685, 966, 1072, 1460, 1596
EaeI	YGGCCR	2 cut(s)	801, 1803
Eam1104I	CTCTTC	1 cut(s)	1267
EarI	CTCTTC	1 cut(s)	1267
Ecl136II	GAGCTC	1 cut(s)	1784
Eco130I	CCWWGG	1 cut(s)	345
Eco24I	GRGCYC	1 cut(s)	1786
Eco31I	GGTCTC	1 cut(s)	1190
Eco47I	GGWCC	2 cut(s)	220, 322
Eco53kI	GAGCTC	1 cut(s)	1784
Eco57I	CTGAAG	3 cut(s)	372, 1332, 1779
Eco88I	CYCGRG	1 cut(s)	1365
Eco91I	GGTNACC	1 cut(s)	2139
EcoICRI	GAGCTC	1 cut(s)	1784
EcoO65I	GGTNACC	1 cut(s)	2139
EcoRII	CCWGG	3 cut(s)	253, 1660, 2135
EcoT14I	CCWWGG	1 cut(s)	345
EcoT38I	GRGCYC	1 cut(s)	1786
ErhI	CCWWGG	1 cut(s)	345
Esp3I	CGTCTC	1 cut(s)	95
FalI	AAGNNNNNCTT	4 cut(s)	371, 403, 1374, 1406
FaqI	GGGAC	2 cut(s)	83, 1679
FauI	CCCGC	1 cut(s)	500
FbaI	TGATCA	1 cut(s)	1483
Fnu4HI	GCNGC	9 cut(s)	272, 774, 822, 1700, 1838, 1841, 1884, 1902, 2091
FokI	GGATG	7 cut(s)	541, 674, 1303, 1373, 1493, 1939, 1982
FriOI	GRGCYC	1 cut(s)	1786
Fsp4HI	GCNGC	9 cut(s)	272, 774, 822, 1700, 1838, 1841, 1884, 1902, 2091
FspBI	CTAG	2 cut(s)	155, 662
GlaI	GCGC	2 cut(s)	236, 1698
GluI	GCNGC	9 cut(s)	272, 774, 822, 1700, 1838, 1841, 1884, 1902, 2091
GsuI	CTGGAG	2 cut(s)	665, 762
HaeII	RGCGCY	1 cut(s)	1700
HaeIII	GGCC	5 cut(s)	104, 803, 1626, 1805, 2078
HapII	CCGG	3 cut(s)	418, 847, 1627
HgaI	GACGC	1 cut(s)	1827
HhaI	GCGC	2 cut(s)	237, 1699
Hin1I	GRCGYC	1 cut(s)	1819
Hin6I	GCGC	2 cut(s)	235, 1697
HinP1I	GCGC	2 cut(s)	235, 1697
HincII	GTYRAC	3 cut(s)	934, 1304, 1720
HindII	GTYRAC	3 cut(s)	934, 1304, 1720
HindIII	AAGCTT	1 cut(s)	1767
HinfI	GANTC	5 cut(s)	59, 192, 280, 1955, 2056
HpaII	CCGG	3 cut(s)	418, 847, 1627
HphI	GGTGA	5 cut(s)	521, 760, 1571, 1688, 1856
Hpy166II	GTNNAC	7 cut(s)	322, 512, 934, 1097, 1304, 1508, 1720
Hpy188III	TCNNGA	8 cut(s)	92, 215, 418, 502, 520, 992, 1493, 1787
Hpy8I	GTNNAC	7 cut(s)	322, 512, 934, 1097, 1304, 1508, 1720
Hpy99I	CGWCG	2 cut(s)	1338, 1458
HpyAV	CCTTC	5 cut(s)	7, 347, 1400, 1737, 1917
HpyCH4III	ACNGT	6 cut(s)	368, 931, 1243, 1338, 1717, 1744
HpyCH4IV	ACGT	3 cut(s)	584, 1327, 1510
HpyF10VI	GCNNNNNNNGC	6 cut(s)	479, 773, 1437, 1536, 1781, 1827
HpySE526I	ACGT	3 cut(s)	584, 1327, 1510
Hsp92I	GRCGYC	1 cut(s)	1819
HspAI	GCGC	2 cut(s)	235, 1697
Kpn2I	TCCGGA	1 cut(s)	417
Ksp22I	TGATCA	1 cut(s)	1483
LmnI	GCTCC	3 cut(s)	494, 1681, 1707
Lsp1109I	GCAGC	9 cut(s)	258, 760, 833, 1686, 1824, 1852, 1888, 1895, 2077
LweI	GCATC	3 cut(s)	131, 1306, 1486
MaeI	CTAG	2 cut(s)	155, 662
MaeII	ACGT	3 cut(s)	584, 1327, 1510
MaeIII	GTNAC	6 cut(s)	406, 748, 998, 1567, 2065, 2139
MflI	RGATCY	3 cut(s)	1444, 1789, 1939
MhlI	GDGCHC	4 cut(s)	167, 1139, 1786, 2113
MlsI	TGGCCA	2 cut(s)	803, 1805
MluNI	TGGCCA	2 cut(s)	803, 1805
MlyI	GAGTC	1 cut(s)	1964
MmeI	TCCRAC	2 cut(s)	582, 1080
Mox20I	TGGCCA	2 cut(s)	803, 1805
MroI	TCCGGA	1 cut(s)	417
MscI	TGGCCA	2 cut(s)	803, 1805
MseI	TTAA	6 cut(s)	716, 728, 1205, 1266, 1655, 1689
Msp20I	TGGCCA	2 cut(s)	803, 1805
MspCI	CTTAAG	1 cut(s)	1265
MspI	CCGG	3 cut(s)	418, 847, 1627
MspR9I	CCNGG	3 cut(s)	255, 1662, 2137
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	3 cut(s)	255, 1662, 2137
MvnI	CGCG	1 cut(s)	495
MwoI	GCNNNNNNNGC	6 cut(s)	479, 773, 1437, 1536, 1781, 1827
NcoI	CCATGG	1 cut(s)	345
NlaIV	GGNNCC	1 cut(s)	324
NmuCI	GTSAC	4 cut(s)	406, 748, 1567, 2065
NspI	RCATGY	3 cut(s)	799, 1046, 1726
PaeR7I	CTCGAG	1 cut(s)	1365
PagI	TCATGA	1 cut(s)	519
PcsI	WCGNNNNNNNCGW	1 cut(s)	1185
PctI	GAATGC	1 cut(s)	199
PfeI	GAWTC	4 cut(s)	59, 192, 280, 2056
PinAI	ACCGGT	1 cut(s)	846
PkrI	GCNGC	9 cut(s)	273, 775, 823, 1701, 1839, 1842, 1885, 1903, 2092
Ple19I	CGATCG	1 cut(s)	1179
PleI	GAGTC	1 cut(s)	1963
PpsI	GAGTC	1 cut(s)	1963
PshBI	ATTAAT	1 cut(s)	728
PsiI	TTATAA	1 cut(s)	458
Psp124BI	GAGCTC	1 cut(s)	1786
Psp6I	CCWGG	3 cut(s)	253, 1660, 2135
PspEI	GGTNACC	1 cut(s)	2139
PspGI	CCWGG	3 cut(s)	253, 1660, 2135
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	2 cut(s)	220, 322
PspXI	VCTCGAGB	1 cut(s)	1365
PstI	CTGCAG	2 cut(s)	1842, 2155
PstNI	CAGNNNCTG	2 cut(s)	773, 2159
PsuI	RGATCY	3 cut(s)	1444, 1789, 1939
PvuI	CGATCG	1 cut(s)	1179
RsaI	GTAC	6 cut(s)	332, 686, 967, 1073, 1461, 1597
RsaNI	GTAC	6 cut(s)	331, 685, 966, 1072, 1460, 1596
SacI	GAGCTC	1 cut(s)	1786
SaqAI	TTAA	6 cut(s)	716, 728, 1205, 1266, 1655, 1689
SatI	GCNGC	9 cut(s)	272, 774, 822, 1700, 1838, 1841, 1884, 1902, 2091
Sau96I	GGNCC	2 cut(s)	220, 322
ScaI	AGTACT	1 cut(s)	1073
SchI	GAGTC	1 cut(s)	1964
ScrFI	CCNGG	3 cut(s)	255, 1662, 2137
SduI	GDGCHC	4 cut(s)	167, 1139, 1786, 2113
SfaNI	GCATC	3 cut(s)	131, 1306, 1486
SfcI	CTRYAG	2 cut(s)	1838, 2151
Sfr274I	CTCGAG	1 cut(s)	1365
SinI	GGWCC	2 cut(s)	220, 322
SlaI	CTCGAG	1 cut(s)	1365
SmlI	CTYRAG	6 cut(s)	1250, 1265, 1365, 1785, 1948, 2080
SmoI	CTYRAG	6 cut(s)	1250, 1265, 1365, 1785, 1948, 2080
SpeI	ACTAGT	1 cut(s)	154
SsiI	CCGC	3 cut(s)	428, 493, 1674
SspI	AATATT	2 cut(s)	1020, 2183
SspMI	CTAG	2 cut(s)	155, 662
SstI	GAGCTC	1 cut(s)	1786
StyD4I	CCNGG	3 cut(s)	253, 1660, 2135
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	6 cut(s)	368, 931, 1243, 1338, 1717, 1744
TaiI	ACGT	3 cut(s)	587, 1330, 1513
TaqI	TCGA	5 cut(s)	93, 283, 1333, 1366, 1453
TatI	WGTACW	3 cut(s)	330, 684, 1071
TfiI	GAWTC	4 cut(s)	59, 192, 280, 2056
Tru1I	TTAA	6 cut(s)	716, 728, 1205, 1266, 1655, 1689
Tru9I	TTAA	6 cut(s)	716, 728, 1205, 1266, 1655, 1689
TscAI	CASTG	4 cut(s)	1285, 1572, 1720, 2176
TseFI	GTSAC	4 cut(s)	406, 748, 1567, 2065
TseI	GCWGC	9 cut(s)	271, 773, 821, 1699, 1837, 1840, 1883, 1901, 2090
Tsp45I	GTSAC	4 cut(s)	406, 748, 1567, 2065
TspDTI	ATGAA	9 cut(s)	280, 392, 536, 1051, 1382, 1392, 1573, 1882, 2069
TspGWI	ACGGA	2 cut(s)	656, 896
TspRI	CASTG	4 cut(s)	1285, 1572, 1720, 2176
Vha464I	CTTAAG	1 cut(s)	1265
VpaK11BI	GGWCC	2 cut(s)	220, 322
VspI	ATTAAT	1 cut(s)	728
XapI	RAATTY	5 cut(s)	184, 391, 1123, 1796, 2035
XceI	RCATGY	3 cut(s)	799, 1046, 1726
XhoI	CTCGAG	1 cut(s)	1365
XspI	CTAG	2 cut(s)	155, 662
ZrmI	AGTACT	1 cut(s)	1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.