Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008944

Physical Location & Seq

Genomic Coordinates Reverse (-)

7431027 .. 7433275

Gene Structure 2249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0048000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGTGCCATGGTGGTTGACGTCTGAGCACGACCTTCGCCGCCGCCGAAAGAAGAACCAAATGGATTTATTTTCTGAGATTTTGGGTATGACGATGCATGAAGACTCGTGCTTGATCAGGATCTCAATGGGGAACTATCAAAAGCAAAGCAAAGCTATGTCCGATGTTCTCGGTCAATTCTCAGGGAAGAAGCCCGTAGGGCTGGATTGCACCAGCTGGCTTTTTGTGGTTCGTGAGGTACTGAGATTTGACCTTTATGGGAAAGACTACTTCATTGTCATGAATGCTTCAGAGATCACTGACAAACTTGGTCTCCACACTTTCGTCAACGCCAATGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

113

Amino Acids

13.12

Weight (kDa)

8.62

Isoelectric Point (pI)

61.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30360
fragaria_vesca	FvH4_4g09800
malus_domestica	MD13G1261400.v1.1 MD16G1264100.v1.1
prunus_persica	Prupe.1G095400_v2.0.a1 Prupe.1G095400_v2.0.a1 Prupe.1G095400_v2.0.a1 Prupe.1G095400_v2.0.a1 Prupe.1G095400_v2.0.a1
pyrus_communis	pycom13g24930 pycom16g23260
rosa_chinensis	RchiOBHm_Chr4g0404621
rosa_laevigata	RLG00000008918
rosa_multiflora	Rmu_sc0002699.1_g000026
rosa_roxburghii	Rroxscaffold_5G00348770
rosa_rugosa	Rorug04G0048000
rosa_samantha	Rh4AG124000 Rh4BG117700 Rh4BG117800 Rh4CG132100 Rh4DG116900
rosa_wichuraiana	Rw4G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	23
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	2 cut(s)	40, 43
AclWI	GGATC	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	273
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	1 cut(s)	240
AluBI	AGCT	2 cut(s)	155, 216
AluI	AGCT	2 cut(s)	155, 216
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	317
AlwI	GGATC	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	30
BcgI	CGANNNNNNTGC	2 cut(s)	17, 51
BclI	TGATCA	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	317
BfaI	CTAG	1 cut(s)	340
BglI	GCCNNNNNGGC	1 cut(s)	199
BisI	GCNGC	2 cut(s)	40, 43
BlsI	GCNGC	2 cut(s)	41, 44
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	8
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bse8I	GATNNNNATC	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	8
BseJI	GATNNNNATC	1 cut(s)	119
BseMII	CTCAG	4 cut(s)	15, 66, 195, 233
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	30
BsmAI	GTCTC	1 cut(s)	317
BsmI	GAATGC	1 cut(s)	289
Bso31I	GGTCTC	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	3 cut(s)	114, 120, 294
Bsp19I	CCATGG	1 cut(s)	8
BspACI	CCGC	2 cut(s)	40, 43
BspCNI	CTCAG	4 cut(s)	16, 67, 194, 234
BspHI	TCATGA	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	128
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	3 cut(s)	114, 120, 294
BssNI	GRCGYC	1 cut(s)	20
BssSI	CACGAG	1 cut(s)	106
BssT1I	CCWWGG	1 cut(s)	8
Bst2BI	CACGAG	1 cut(s)	106
BstACI	GRCGYC	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	218
BstDEI	CTNAG	4 cut(s)	24, 75, 181, 242
BstDSI	CCRYGG	1 cut(s)	8
BstKTI	GATC	3 cut(s)	117, 123, 297
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	3 cut(s)	114, 120, 294
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstV2I	GAAGAC	1 cut(s)	108
BstX2I	RGATCY	1 cut(s)	120
BstYI	RGATCY	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	8
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	1 cut(s)	218
CciI	TCATGA	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	239
CviAII	CATG	3 cut(s)	9, 98, 280
CviJI	RGCY	6 cut(s)	155, 193, 202, 216, 220, 339
CviKI_1	RGCY	6 cut(s)	155, 193, 202, 216, 220, 339
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	4 cut(s)	24, 75, 181, 242
DpnI	GATC	3 cut(s)	116, 122, 296
DpnII	GATC	3 cut(s)	114, 120, 294
Eco130I	CCWWGG	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	317
Eco57I	CTGAAG	1 cut(s)	273
EcoT14I	CCWWGG	1 cut(s)	8
EcoT22I	ATGCAT	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	8
FaeI	CATG	3 cut(s)	12, 101, 283
FaiI	YATR	6 cut(s)	10, 89, 99, 158, 258, 281
FatI	CATG	3 cut(s)	8, 97, 279
FbaI	TGATCA	1 cut(s)	114
Fnu4HI	GCNGC	2 cut(s)	40, 43
Fsp4HI	GCNGC	2 cut(s)	40, 43
FspBI	CTAG	1 cut(s)	340
GluI	GCNGC	2 cut(s)	40, 43
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	3 cut(s)	12, 101, 283
HincII	GTYRAC	2 cut(s)	18, 328
HindII	GTYRAC	2 cut(s)	18, 328
HinfI	GANTC	1 cut(s)	104
Hpy166II	GTNNAC	2 cut(s)	18, 328
Hpy188I	TCNGA	4 cut(s)	25, 76, 163, 292
Hpy188III	TCNNGA	3 cut(s)	118, 233, 280
Hpy8I	GTNNAC	2 cut(s)	18, 328
HpyAV	CCTTC	1 cut(s)	44
HpyCH4IV	ACGT	1 cut(s)	20
HpyCH4V	TGCA	2 cut(s)	97, 210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpyF3I	CTNAG	4 cut(s)	24, 75, 181, 242
HpySE526I	ACGT	1 cut(s)	20
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	3 cut(s)	12, 101, 283
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	3 cut(s)	114, 120, 294
LpnPI	CCDG	5 cut(s)	103, 168, 188, 202, 226
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	1 cut(s)	340
MaeII	ACGT	1 cut(s)	20
MalI	GATC	3 cut(s)	116, 122, 296
MboI	GATC	3 cut(s)	114, 120, 294
MboII	GAAGA	3 cut(s)	64, 113, 199
MflI	RGATCY	1 cut(s)	120
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	1 cut(s)	176
MlyI	GAGTC	1 cut(s)	98
MnlI	CCTC	1 cut(s)	229
Mph1103I	ATGCAT	1 cut(s)	99
MslI	CAYNNNNRTG	1 cut(s)	278
MspA1I	CMGCKG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	289
MwoI	GCNNNNNNNGC	1 cut(s)	199
NcoI	CCATGG	1 cut(s)	8
NdeII	GATC	3 cut(s)	114, 120, 294
NlaIII	CATG	3 cut(s)	12, 101, 283
NlaIV	GGNNCC	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	99
PagI	TCATGA	1 cut(s)	279
PcsI	WCGNNNNNNNCGW	1 cut(s)	43
PctI	GAATGC	1 cut(s)	289
PkrI	GCNGC	2 cut(s)	41, 44
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	120
PvuII	CAGCTG	1 cut(s)	216
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	278
SatI	GCNGC	2 cut(s)	40, 43
Sau3AI	GATC	3 cut(s)	114, 120, 294
SchI	GAGTC	1 cut(s)	98
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	6 cut(s)	23, 36, 157, 218, 240, 255
SfaNI	GCATC	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	278
Sse9I	AATT	1 cut(s)	176
SsiI	CCGC	2 cut(s)	40, 43
SspMI	CTAG	1 cut(s)	340
StyI	CCWWGG	1 cut(s)	8
TaiI	ACGT	1 cut(s)	23
TaqII	GACCGA	1 cut(s)	161
TasI	AATT	1 cut(s)	176
TauI	GCSGC	2 cut(s)	42, 45
TscAI	CASTG	1 cut(s)	304
TspDTI	ATGAA	3 cut(s)	114, 262, 296
TspRI	CASTG	1 cut(s)	304
XspI	CTAG	1 cut(s)	340
ZraI	GACGTC	1 cut(s)	21
Zsp2I	ATGCAT	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.