RLG00000009410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018223
Physical Location & Seq
Reverse (-)
52492728 .. 52493414
687 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009410

Sequence Viewer

Length: 516 bp
ATGACGGCACCTGAGTTCCCAACCATTGGCCTGATTAGATCTCGGGATGAATGGGAAGCCGACTCTGAACATCCGAAACCGCGAGATGAGAATGACATGGATATTGTACTGAAGGATGCAGTGTCAATAGAAGGAGGAAATCCCATGATTGGGGATCTGAATTCAATACGAAAGAAGTCAGCGATAGAGGAGATTCTTCCTAGTAATAAGCGGGATTGTACGGATCCTAATTTGAAGGGATTAAGCGGGAAAGCTAGTGGAAAGGCGTTGATTAGGATGGATGGTGTGAGTCACTCTAATTCAACCACGTCGAAGTCTGGGCATGGGCCTACAAAAAACAGTGCAGTGCGGGCCGCGGTTGACTGTGGAGCTGAAGCCCATATGAGGAAACCTAGGGGGGCCAGAAACAGGCCGGTCTGTCCCCTGCAATTAGTAGGCCAGCAAGGAAGTTTCTGGAAAGTTCCAAGAAATCGGGTAATAAGGGTTTTCTTGTTGGGAACAATTTTAGCTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

18.56

Weight (kDa)

9.47

Isoelectric Point (pI)

34.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018223)

Species Orthologous Gene IDs
rosa_laevigata RLG00000009410 RLG00000020622 RLG00000020623
rosa_multiflora Rmu_sc0006702.1_g000001
rosa_rugosa Rorug05G0215500
rosa_samantha Rh1AG254000 Rh1AG290000 Rh2CG265800 Rh5AG310600 Rh5BG130400 Rh6AG224100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 7
AccB7I CCANNNNNTGG 1 cut(s) 26
AccII CGCG 2 cut(s) 82, 356
AciI CCGC 6 cut(s) 80, 211, 246, 349, 354, 356
AclWI GGATC 3 cut(s) 162, 218, 231
AcsI RAATTY 1 cut(s) 160
AcuI CTGAAG 2 cut(s) 131, 393
AfaI GTAC 2 cut(s) 108, 220
AfiI CCNNNNNNNGG 5 cut(s) 26, 149, 150, 384, 408
AgsI TTSAA 3 cut(s) 165, 235, 303
AjiI CACGTC 1 cut(s) 309
AluBI AGCT 3 cut(s) 254, 371, 509
AluI AGCT 3 cut(s) 254, 371, 509
AlwI GGATC 3 cut(s) 162, 218, 231
Ama87I CYCGRG 1 cut(s) 42
AoxI GGCC 6 cut(s) 28, 326, 351, 399, 410, 436
ApoI RAATTY 1 cut(s) 160
AspA2I CCTAGG 1 cut(s) 392
AspS9I GGNCC 3 cut(s) 326, 351, 399
AvaI CYCGRG 1 cut(s) 42
AvrII CCTAGG 1 cut(s) 392
BamHI GGATCC 1 cut(s) 223
BanI GGYRCC 1 cut(s) 7
BccI CCATC 2 cut(s) 271, 275
BceAI ACGGC 1 cut(s) 21
BfaI CTAG 3 cut(s) 201, 255, 393
BglII AGATCT 1 cut(s) 38
BisI GCNGC 1 cut(s) 354
BlnI CCTAGG 1 cut(s) 392
BlsI GCNGC 1 cut(s) 355
BmeT110I CYCGRG 1 cut(s) 42
BmgBI CACGTC 1 cut(s) 309
BmgT120I GGNCC 3 cut(s) 326, 351, 399
BmiI GGNNCC 3 cut(s) 9, 225, 400
BmsI GCATC 1 cut(s) 106
BsaJI CCNNGG 2 cut(s) 354, 392
Bsc4I CCNNNNNNNGG 5 cut(s) 26, 149, 150, 384, 408
Bse118I RCCGGY 1 cut(s) 412
BseDI CCNNGG 2 cut(s) 354, 392
BseGI GGATG 5 cut(s) 52, 70, 121, 282, 286
BseLI CCNNNNNNNGG 5 cut(s) 26, 149, 150, 384, 408
BseRI GAGGAG 1 cut(s) 203
BsgI GTGCAG 1 cut(s) 363
Bsh1236I CGCG 2 cut(s) 82, 356
BshFI GGCC 6 cut(s) 30, 328, 353, 401, 412, 438
BshNI GGYRCC 1 cut(s) 7
BsiHKCI CYCGRG 1 cut(s) 42
BsiSI CCGG 1 cut(s) 413
BslFI GGGAC 1 cut(s) 405
BslI CCNNNNNNNGG 5 cut(s) 26, 149, 150, 384, 408
BsmFI GGGAC 1 cut(s) 405
BsnI GGCC 6 cut(s) 30, 328, 353, 401, 412, 438
BsoBI CYCGRG 1 cut(s) 42
Bsp143I GATC 3 cut(s) 38, 154, 223
BspACI CCGC 6 cut(s) 80, 211, 246, 349, 354, 356
BspANI GGCC 6 cut(s) 30, 328, 353, 401, 412, 438
BspCNI CTCAG 1 cut(s) 4
BspFNI CGCG 2 cut(s) 82, 356
BspLI GGNNCC 3 cut(s) 9, 225, 400
BspPI GGATC 3 cut(s) 162, 218, 231
BspT107I GGYRCC 1 cut(s) 7
BsrFI RCCGGY 1 cut(s) 412
BssAI RCCGGY 1 cut(s) 412
BssECI CCNNGG 2 cut(s) 354, 392
BssMI GATC 3 cut(s) 38, 154, 223
BssT1I CCWWGG 1 cut(s) 392
Bst4CI ACNGT 2 cut(s) 341, 365
BstC8I GCNNGC 2 cut(s) 351, 440
BstDEI CTNAG 1 cut(s) 12
BstDSI CCRYGG 1 cut(s) 354
BstF5I GGATG 5 cut(s) 52, 70, 121, 282, 286
BstFNI CGCG 2 cut(s) 82, 356
BstKTI GATC 3 cut(s) 41, 157, 226
BstMBI GATC 3 cut(s) 38, 154, 223
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstUI CGCG 2 cut(s) 82, 356
BstX2I RGATCY 3 cut(s) 38, 154, 223
BstYI RGATCY 3 cut(s) 38, 154, 223
BsuRI GGCC 6 cut(s) 30, 328, 353, 401, 412, 438
BtgI CCRYGG 1 cut(s) 354
BtrI CACGTC 1 cut(s) 309
BtsCI GGATG 5 cut(s) 52, 70, 121, 282, 286
BtsI GCAGTG 2 cut(s) 126, 351
BtsIMutI CAGTG 3 cut(s) 126, 346, 351
Cac8I GCNNGC 2 cut(s) 351, 440
Cfr10I RCCGGY 1 cut(s) 412
Cfr13I GGNCC 3 cut(s) 326, 351, 399
Cfr42I CCGCGG 1 cut(s) 357
Csp6I GTAC 2 cut(s) 107, 219
CviAII CATG 3 cut(s) 97, 145, 323
CviQI GTAC 2 cut(s) 107, 219
DdeI CTNAG 1 cut(s) 12
DpnI GATC 3 cut(s) 40, 156, 225
DpnII GATC 3 cut(s) 38, 154, 223
Eco130I CCWWGG 1 cut(s) 392
Eco57I CTGAAG 2 cut(s) 131, 393
Eco88I CYCGRG 1 cut(s) 42
EcoRI GAATTC 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 392
ErhI CCWWGG 1 cut(s) 392
FaeI CATG 3 cut(s) 100, 148, 326
FaiI YATR 6 cut(s) 98, 146, 324, 381, 383, 514
FaqI GGGAC 1 cut(s) 405
FatI CATG 3 cut(s) 96, 144, 322
FauI CCCGC 3 cut(s) 204, 239, 342
FauNDI CATATG 1 cut(s) 381
Fnu4HI GCNGC 1 cut(s) 354
FokI GGATG 5 cut(s) 57, 59, 128, 289, 293
Fsp4HI GCNGC 1 cut(s) 354
FspBI CTAG 3 cut(s) 201, 255, 393
GluI GCNGC 1 cut(s) 354
HaeIII GGCC 6 cut(s) 30, 328, 353, 401, 412, 438
HapII CCGG 1 cut(s) 413
Hin1II CATG 3 cut(s) 100, 148, 326
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HinfI GANTC 3 cut(s) 62, 193, 289
HpaII CCGG 1 cut(s) 413
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 3 cut(s) 67, 75, 159
Hpy188III TCNNGA 2 cut(s) 44, 454
Hpy8I GTNNAC 1 cut(s) 361
Hpy99I CGWCG 1 cut(s) 313
HpyAV CCTTC 3 cut(s) 106, 125, 229
HpyCH4III ACNGT 2 cut(s) 341, 365
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 3 cut(s) 119, 344, 427
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 3 cut(s) 100, 148, 326
KspI CCGCGG 1 cut(s) 357
Kzo9I GATC 3 cut(s) 38, 154, 223
LmnI GCTCC 2 cut(s) 368, 514
LpnPI CCDG 9 cut(s) 24, 44, 303, 394, 415, 426, 437, 439, 452
LweI GCATC 1 cut(s) 106
MaeI CTAG 3 cut(s) 201, 255, 393
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 1 cut(s) 290
MalI GATC 3 cut(s) 40, 156, 225
MboI GATC 3 cut(s) 38, 154, 223
MboII GAAGA 1 cut(s) 188
MflI RGATCY 3 cut(s) 38, 154, 223
MluCI AATT 5 cut(s) 160, 229, 298, 428, 501
MlyI GAGTC 2 cut(s) 56, 298
MnlI CCTC 3 cut(s) 128, 181, 378
MseI TTAA 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 356
MspI CCGG 1 cut(s) 413
MvnI CGCG 2 cut(s) 82, 356
MwoI GCNNNNNNNGC 1 cut(s) 350
NdeI CATATG 1 cut(s) 381
NdeII GATC 3 cut(s) 38, 154, 223
NlaIII CATG 3 cut(s) 100, 148, 326
NlaIV GGNNCC 3 cut(s) 9, 225, 400
NmuCI GTSAC 1 cut(s) 290
PfeI GAWTC 1 cut(s) 193
PflMI CCANNNNNTGG 1 cut(s) 26
PkrI GCNGC 1 cut(s) 355
PleI GAGTC 2 cut(s) 56, 297
PpsI GAGTC 2 cut(s) 56, 297
PspN4I GGNNCC 3 cut(s) 9, 225, 400
PspPI GGNCC 3 cut(s) 326, 351, 399
PsuI RGATCY 3 cut(s) 38, 154, 223
RsaI GTAC 2 cut(s) 108, 220
RsaNI GTAC 2 cut(s) 107, 219
SacII CCGCGG 1 cut(s) 357
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 1 cut(s) 354
Sau3AI GATC 3 cut(s) 38, 154, 223
Sau96I GGNCC 3 cut(s) 326, 351, 399
SchI GAGTC 2 cut(s) 56, 298
SetI ASST 6 cut(s) 13, 256, 311, 373, 394, 511
SfaNI GCATC 1 cut(s) 106
Sfr303I CCGCGG 1 cut(s) 357
SgrBI CCGCGG 1 cut(s) 357
Sse9I AATT 5 cut(s) 160, 229, 298, 428, 501
SsiI CCGC 6 cut(s) 80, 211, 246, 349, 354, 356
SspMI CTAG 3 cut(s) 201, 255, 393
StyI CCWWGG 1 cut(s) 392
TaaI ACNGT 2 cut(s) 341, 365
TaiI ACGT 1 cut(s) 311
TaqI TCGA 1 cut(s) 311
TasI AATT 5 cut(s) 160, 229, 298, 428, 501
TatI WGTACW 1 cut(s) 106
TauI GCSGC 1 cut(s) 356
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TscAI CASTG 3 cut(s) 126, 346, 351
TseFI GTSAC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 1 cut(s) 63
TspGWI ACGGA 1 cut(s) 236
TspRI CASTG 3 cut(s) 126, 346, 351
Van91I CCANNNNNTGG 1 cut(s) 26
XapI RAATTY 1 cut(s) 160
XmaJI CCTAGG 1 cut(s) 392
XspI CTAG 3 cut(s) 201, 255, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.