Rh6AG224100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0018223
Physical Location & Seq
Forward (+)
40361204 .. 40361554
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG224100.1

Sequence Viewer

Length: 351 bp
ATGCAGGCAGGAAGCGGCGGTGGTGGTAGAAGATTTGGCCTCCATCCGGCTAAACATACTGGCTGGTCTATGGTTGCACCAGATTTTCCTATGATCGGGCTGACTAGGACCCGGGAGGAGTGGGAGGAGGATTCCGGCCAACCGGCACCTCGAGATGAGAATGACATGGAGATAGTGGTAGAGAATACAAAGGAGGGGAGCACCGGTGAGCCAAACCAAAAACGGAGGAAGCTAAAGATGGGGCGGGGGACGACGACGGCGGAGGGGCTCACGGAGGTTCCTATTATGGAATGTTCTTCTTTAGGGGGGGGCAGTAATGTCGAGCTCGGTAATTGCGCAATCATCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.44

Weight (kDa)

5.19

Isoelectric Point (pI)

49.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018223)

Species Orthologous Gene IDs
rosa_laevigata RLG00000009410 RLG00000020622 RLG00000020623
rosa_multiflora Rmu_sc0006702.1_g000001
rosa_rugosa Rorug05G0215500
rosa_samantha Rh1AG254000 Rh1AG290000 Rh2CG265800 Rh5AG310600 Rh5BG130400 Rh6AG224100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 337
AccB1I GGYRCC 1 cut(s) 145
AciI CCGC 4 cut(s) 15, 18, 244, 260
AcoI YGGCCR 1 cut(s) 136
AfiI CCNNNNNNNGG 2 cut(s) 46, 95
AgeI ACCGGT 1 cut(s) 203
AluBI AGCT 2 cut(s) 232, 325
AluI AGCT 2 cut(s) 232, 325
Alw21I GWGCWC 2 cut(s) 203, 327
Ama87I CYCGRG 2 cut(s) 111, 150
AoxI GGCC 2 cut(s) 37, 136
AsiGI ACCGGT 1 cut(s) 203
AspLEI GCGC 1 cut(s) 338
AspS9I GGNCC 1 cut(s) 108
AsuC2I CCSGG 2 cut(s) 112, 113
AsuHPI GGTGA 1 cut(s) 218
AvaI CYCGRG 2 cut(s) 111, 150
AvaII GGWCC 1 cut(s) 108
BanI GGYRCC 1 cut(s) 145
BanII GRGCYC 2 cut(s) 270, 327
Bbv12I GWGCWC 2 cut(s) 203, 327
BccI CCATC 2 cut(s) 51, 232
BceAI ACGGC 1 cut(s) 273
BcgI CGANNNNNNTGC 2 cut(s) 301, 335
BcnI CCSGG 2 cut(s) 112, 113
BfaI CTAG 1 cut(s) 105
BisI GCNGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 17
Bme1390I CCNGG 2 cut(s) 112, 113
Bme18I GGWCC 1 cut(s) 108
BmeT110I CYCGRG 2 cut(s) 111, 150
BmgT120I GGNCC 1 cut(s) 108
BmiI GGNNCC 3 cut(s) 110, 147, 279
BmrFI CCNGG 2 cut(s) 112, 113
BpuMI CCSGG 2 cut(s) 112, 113
BsaJI CCNNGG 1 cut(s) 111
BsaWI WCCGGW 1 cut(s) 203
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 95
Bse118I RCCGGY 2 cut(s) 142, 203
Bse1I ACTGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 2 cut(s) 46, 95
BseNI ACTGG 1 cut(s) 64
BseRI GAGGAG 2 cut(s) 131, 140
BshFI GGCC 2 cut(s) 39, 138
BshNI GGYRCC 1 cut(s) 145
BshTI ACCGGT 1 cut(s) 203
BsiHKAI GWGCWC 2 cut(s) 203, 327
BsiHKCI CYCGRG 2 cut(s) 111, 150
BsiSI CCGG 5 cut(s) 47, 112, 135, 143, 204
BslFI GGGAC 1 cut(s) 262
BslI CCNNNNNNNGG 2 cut(s) 46, 95
BsmFI GGGAC 1 cut(s) 262
BsnI GGCC 2 cut(s) 39, 138
BsoBI CYCGRG 2 cut(s) 111, 150
Bsp1286I GDGCHC 3 cut(s) 203, 270, 327
Bsp143I GATC 1 cut(s) 93
BspACI CCGC 4 cut(s) 15, 18, 244, 260
BspANI GGCC 2 cut(s) 39, 138
BspLI GGNNCC 3 cut(s) 110, 147, 279
BspT107I GGYRCC 1 cut(s) 145
BsrFI RCCGGY 2 cut(s) 142, 203
BsrI ACTGG 1 cut(s) 64
BssAI RCCGGY 2 cut(s) 142, 203
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 6
BstF5I GGATG 1 cut(s) 43
BstHHI GCGC 1 cut(s) 338
BstKTI GATC 1 cut(s) 96
BstMBI GATC 1 cut(s) 93
BstSCI CCNGG 2 cut(s) 110, 111
BsuRI GGCC 2 cut(s) 39, 138
BtsCI GGATG 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 338
Cfr10I RCCGGY 2 cut(s) 142, 203
Cfr13I GGNCC 1 cut(s) 108
Cfr9I CCCGGG 1 cut(s) 111
CspAI ACCGGT 1 cut(s) 203
CviAII CATG 1 cut(s) 166
CviJI RGCY 9 cut(s) 39, 50, 63, 100, 138, 211, 232, 268, 325
CviKI_1 RGCY 9 cut(s) 39, 50, 63, 100, 138, 211, 232, 268, 325
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
EaeI YGGCCR 1 cut(s) 136
EciI GGCGGA 1 cut(s) 275
Ecl136II GAGCTC 1 cut(s) 325
Eco24I GRGCYC 2 cut(s) 270, 327
Eco47I GGWCC 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 325
Eco88I CYCGRG 2 cut(s) 111, 150
EcoICRI GAGCTC 1 cut(s) 325
EcoO109I RGGNCCY 1 cut(s) 108
EcoT38I GRGCYC 2 cut(s) 270, 327
FaeI CATG 1 cut(s) 169
FaiI YATR 5 cut(s) 57, 71, 92, 167, 287
FaqI GGGAC 1 cut(s) 262
FatI CATG 1 cut(s) 165
FauI CCCGC 1 cut(s) 237
Fnu4HI GCNGC 1 cut(s) 16
FokI GGATG 1 cut(s) 30
FriOI GRGCYC 2 cut(s) 270, 327
Fsp4HI GCNGC 1 cut(s) 16
FspBI CTAG 1 cut(s) 105
FspI TGCGCA 1 cut(s) 337
GlaI GCGC 1 cut(s) 337
GluI GCNGC 1 cut(s) 16
HaeIII GGCC 2 cut(s) 39, 138
HapII CCGG 5 cut(s) 47, 112, 135, 143, 204
HhaI GCGC 1 cut(s) 338
Hin1II CATG 1 cut(s) 169
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HinfI GANTC 1 cut(s) 131
HpaII CCGG 5 cut(s) 47, 112, 135, 143, 204
HphI GGTGA 1 cut(s) 218
Hpy188III TCNNGA 1 cut(s) 152
Hpy99I CGWCG 2 cut(s) 256, 259
HpyCH4V TGCA 2 cut(s) 4, 77
Hsp92II CATG 1 cut(s) 169
HspAI GCGC 1 cut(s) 336
Kzo9I GATC 1 cut(s) 93
LmnI GCTCC 1 cut(s) 198
LpnPI CCDG 8 cut(s) 45, 49, 60, 93, 125, 148, 156, 217
MaeI CTAG 1 cut(s) 105
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 2 cut(s) 42, 288
MhlI GDGCHC 3 cut(s) 203, 270, 327
MluCI AATT 1 cut(s) 331
MnlI CCTC 9 cut(s) 50, 109, 118, 121, 159, 187, 219, 256, 268
MseI TTAA 1 cut(s) 349
MspI CCGG 5 cut(s) 47, 112, 135, 143, 204
MspR9I CCNGG 2 cut(s) 112, 113
NciI CCSGG 2 cut(s) 112, 113
NdeII GATC 1 cut(s) 93
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 3 cut(s) 110, 147, 279
NsbI TGCGCA 1 cut(s) 337
PaeR7I CTCGAG 1 cut(s) 150
PfeI GAWTC 1 cut(s) 131
PinAI ACCGGT 1 cut(s) 203
PkrI GCNGC 1 cut(s) 17
PpuMI RGGWCCY 1 cut(s) 108
Psp124BI GAGCTC 1 cut(s) 327
Psp5II RGGWCCY 1 cut(s) 108
PspN4I GGNNCC 3 cut(s) 110, 147, 279
PspPI GGNCC 1 cut(s) 108
PspPPI RGGWCCY 1 cut(s) 108
SacI GAGCTC 1 cut(s) 327
SaqAI TTAA 1 cut(s) 349
SatI GCNGC 1 cut(s) 16
Sau3AI GATC 1 cut(s) 93
Sau96I GGNCC 1 cut(s) 108
ScrFI CCNGG 2 cut(s) 112, 113
SduI GDGCHC 3 cut(s) 203, 270, 327
SetI ASST 4 cut(s) 151, 234, 279, 327
Sfr274I CTCGAG 1 cut(s) 150
SgrAI CRCCGGYG 1 cut(s) 203
SinI GGWCC 1 cut(s) 108
SlaI CTCGAG 1 cut(s) 150
SmaI CCCGGG 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 150
SmoI CTYRAG 1 cut(s) 150
Sse9I AATT 1 cut(s) 331
SsiI CCGC 4 cut(s) 15, 18, 244, 260
SspMI CTAG 1 cut(s) 105
SstI GAGCTC 1 cut(s) 327
StyD4I CCNGG 2 cut(s) 110, 111
TaqI TCGA 2 cut(s) 151, 321
TasI AATT 1 cut(s) 331
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 1 cut(s) 349
Tru9I TTAA 1 cut(s) 349
TspGWI ACGGA 2 cut(s) 238, 287
TspMI CCCGGG 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 108
XhoI CTCGAG 1 cut(s) 150
XmaI CCCGGG 1 cut(s) 111
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.