RLG00000020622

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0018223
Physical Location & Seq
Forward (+)
66816154 .. 66816758
605 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020622

Sequence Viewer

Length: 510 bp
ATGCTTCCGGTGGAGGTGGCACTAGATTTGGTCTCTATCAAGCAAAAAAGATGGTCATCATTGGTGCATTCAATACTAGGAGGAAGTCCCATGATTGTGAATCCGAATTCAATGCAAAAAACGTCAGCGATAGAAGAGAATCAACCTGAGTGGATCGCTAGTAATAAGCATGATTGTACAGATCCTGAATTAAAGGGATTGAGTTGGAAAGTTAGTGGAAAGGCGTTGATTGGGATGGATGGTAAGAACCACTCTAATTTAGCTGCACATTGTGCGAATATGAGGTCAACCAAGCCGAAGTCTGGGCCCAAAAAATGCCATAAAGTGAAGGCCACGGTGGACTGTGCAGTAGAAGCCCAAACGAAGTCTAAGCCACAGGGGGGCCCGAAACAAGTCGGTCTGTCCCCTGCAATTACTAGGCCAATAGGGAAGGTTCTAGAAATTTCCAAGAAATCTGGCAGCAAGGGTTTTCTTGTTCGGAAGAATGTTAGCTCCACAAGTCGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.19

Weight (kDa)

10.02

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018223)

Species Orthologous Gene IDs
rosa_laevigata RLG00000009410 RLG00000020622 RLG00000020623
rosa_multiflora Rmu_sc0006702.1_g000001
rosa_rugosa Rorug05G0215500
rosa_samantha Rh1AG254000 Rh1AG290000 Rh2CG265800 Rh5AG310600 Rh5BG130400 Rh6AG224100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 161, 176
AcsI RAATTY 2 cut(s) 106, 441
AdeI CACNNNGTG 1 cut(s) 272
AfaI GTAC 1 cut(s) 178
AfiI CCNNNNNNNGG 2 cut(s) 302, 380
AgsI TTSAA 2 cut(s) 72, 111
AluBI AGCT 2 cut(s) 263, 492
AluI AGCT 2 cut(s) 263, 492
Alw26I GTCTC 1 cut(s) 37
AlwI GGATC 2 cut(s) 161, 176
AlwNI CAGNNNCTG 1 cut(s) 185
AoxI GGCC 4 cut(s) 305, 330, 382, 419
ApaI GGGCCC 2 cut(s) 309, 386
ApeKI GCWGC 2 cut(s) 263, 459
ApoI RAATTY 2 cut(s) 106, 441
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
AspS9I GGNCC 4 cut(s) 305, 306, 382, 383
BaeGI GKGCMC 2 cut(s) 309, 386
BanII GRGCYC 2 cut(s) 309, 386
BbvI GCAGC 2 cut(s) 250, 471
BccI CCATC 3 cut(s) 45, 229, 233
BcgI CGANNNNNNTGC 2 cut(s) 94, 128
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 5 cut(s) 23, 77, 159, 417, 437
BisI GCNGC 2 cut(s) 264, 460
BlsI GCNGC 2 cut(s) 265, 461
BmgT120I GGNCC 4 cut(s) 305, 306, 382, 383
BmiI GGNNCC 3 cut(s) 307, 383, 384
BsaBI GATNNNNATC 1 cut(s) 55
BsaI GGTCTC 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 333
BsaWI WCCGGW 1 cut(s) 7
Bsc4I CCNNNNNNNGG 2 cut(s) 302, 380
Bse8I GATNNNNATC 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 2 cut(s) 240, 244
BseJI GATNNNNATC 1 cut(s) 55
BseLI CCNNNNNNNGG 2 cut(s) 302, 380
BseMII CTCAG 1 cut(s) 138
BseSI GKGCMC 2 cut(s) 309, 386
BseXI GCAGC 2 cut(s) 250, 471
BsgI GTGCAG 2 cut(s) 249, 366
BshFI GGCC 4 cut(s) 307, 332, 384, 421
BsiSI CCGG 1 cut(s) 8
BslFI GGGAC 2 cut(s) 72, 388
BslI CCNNNNNNNGG 2 cut(s) 302, 380
BsmAI GTCTC 1 cut(s) 37
BsmFI GGGAC 2 cut(s) 72, 388
BsmI GAATGC 1 cut(s) 67
BsnI GGCC 4 cut(s) 307, 332, 384, 421
Bso31I GGTCTC 1 cut(s) 37
Bsp120I GGGCCC 2 cut(s) 305, 382
Bsp1286I GDGCHC 2 cut(s) 309, 386
Bsp1407I TGTACA 1 cut(s) 176
Bsp143I GATC 2 cut(s) 153, 181
BspANI GGCC 4 cut(s) 307, 332, 384, 421
BspCNI CTCAG 1 cut(s) 139
BspLI GGNNCC 3 cut(s) 307, 383, 384
BspPI GGATC 2 cut(s) 161, 176
BspTNI GGTCTC 1 cut(s) 37
BsrGI TGTACA 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 2 cut(s) 153, 181
Bst4CI ACNGT 2 cut(s) 337, 344
Bst6I CTCTTC 1 cut(s) 129
BstAPI GCANNNNNTGC 1 cut(s) 272
BstAUI TGTACA 1 cut(s) 176
BstDEI CTNAG 2 cut(s) 147, 369
BstDSI CCRYGG 1 cut(s) 333
BstF5I GGATG 2 cut(s) 240, 244
BstKTI GATC 2 cut(s) 156, 184
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 2 cut(s) 153, 181
BstMWI GCNNNNNNNGC 2 cut(s) 272, 353
BstSLI GKGCMC 2 cut(s) 309, 386
BstV1I GCAGC 2 cut(s) 250, 471
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 4 cut(s) 307, 332, 384, 421
BtgI CCRYGG 1 cut(s) 333
BtsCI GGATG 2 cut(s) 240, 244
CaiI CAGNNNCTG 1 cut(s) 185
Cfr13I GGNCC 4 cut(s) 305, 306, 382, 383
Csp6I GTAC 1 cut(s) 177
CspCI CAANNNNNGTGG 2 cut(s) 131, 166
CviAII CATG 2 cut(s) 91, 170
CviJI RGCY 9 cut(s) 263, 295, 307, 332, 356, 373, 384, 421, 492
CviKI_1 RGCY 9 cut(s) 263, 295, 307, 332, 356, 373, 384, 421, 492
CviQI GTAC 1 cut(s) 177
DdeI CTNAG 2 cut(s) 147, 369
DpnI GATC 2 cut(s) 155, 183
DpnII GATC 2 cut(s) 153, 181
DraIII CACNNNGTG 1 cut(s) 272
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Eco24I GRGCYC 2 cut(s) 309, 386
Eco31I GGTCTC 1 cut(s) 37
EcoO109I RGGNCCY 1 cut(s) 382
EcoRI GAATTC 1 cut(s) 106
EcoT38I GRGCYC 2 cut(s) 309, 386
FaeI CATG 2 cut(s) 94, 173
FaiI YATR 4 cut(s) 92, 171, 281, 321
FaqI GGGAC 2 cut(s) 72, 388
FatI CATG 2 cut(s) 90, 169
Fnu4HI GCNGC 2 cut(s) 264, 460
FokI GGATG 2 cut(s) 247, 251
FriOI GRGCYC 2 cut(s) 309, 386
Fsp4HI GCNGC 2 cut(s) 264, 460
FspBI CTAG 5 cut(s) 23, 77, 159, 417, 437
GluI GCNGC 2 cut(s) 264, 460
HaeIII GGCC 4 cut(s) 307, 332, 384, 421
HapII CCGG 1 cut(s) 8
Hin1II CATG 2 cut(s) 94, 173
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HinfI GANTC 2 cut(s) 100, 139
HpaII CCGG 1 cut(s) 8
Hpy166II GTNNAC 2 cut(s) 288, 340
Hpy188I TCNGA 2 cut(s) 105, 480
Hpy188III TCNNGA 2 cut(s) 185, 437
Hpy8I GTNNAC 2 cut(s) 288, 340
HpyAV CCTTC 3 cut(s) 322, 424, 498
HpyCH4III ACNGT 2 cut(s) 337, 344
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 5 cut(s) 67, 115, 266, 347, 410
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 353
HpyF3I CTNAG 2 cut(s) 147, 369
HpySE526I ACGT 1 cut(s) 122
Hsp92II CATG 2 cut(s) 94, 173
Kzo9I GATC 2 cut(s) 153, 181
LmnI GCTCC 1 cut(s) 497
LpnPI CCDG 7 cut(s) 21, 159, 198, 288, 362, 420, 441
Lsp1109I GCAGC 2 cut(s) 250, 471
MaeI CTAG 5 cut(s) 23, 77, 159, 417, 437
MaeII ACGT 1 cut(s) 122
MalI GATC 2 cut(s) 155, 183
MboI GATC 2 cut(s) 153, 181
MboII GAAGA 2 cut(s) 146, 493
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 2 cut(s) 309, 386
MluCI AATT 5 cut(s) 106, 188, 256, 411, 441
MmeI TCCRAC 1 cut(s) 185
MnlI CCTC 3 cut(s) 7, 74, 276
MseI TTAA 1 cut(s) 191
MslI CAYNNNNRTG 1 cut(s) 95
MspI CCGG 1 cut(s) 8
Mva1269I GAATGC 1 cut(s) 67
MwoI GCNNNNNNNGC 2 cut(s) 272, 353
NdeII GATC 2 cut(s) 153, 181
NlaIII CATG 2 cut(s) 94, 173
NlaIV GGNNCC 3 cut(s) 307, 383, 384
PctI GAATGC 1 cut(s) 67
PfeI GAWTC 2 cut(s) 100, 139
PkrI GCNGC 2 cut(s) 265, 461
PspN4I GGNNCC 3 cut(s) 307, 383, 384
PspOMI GGGCCC 2 cut(s) 305, 382
PspPI GGNCC 4 cut(s) 305, 306, 382, 383
PstNI CAGNNNCTG 1 cut(s) 185
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
RseI CAYNNNNRTG 1 cut(s) 95
SaqAI TTAA 1 cut(s) 191
SatI GCNGC 2 cut(s) 264, 460
Sau3AI GATC 2 cut(s) 153, 181
Sau96I GGNCC 4 cut(s) 305, 306, 382, 383
SduI GDGCHC 2 cut(s) 309, 386
SetI ASST 8 cut(s) 18, 125, 148, 265, 287, 435, 494, 509
SmiMI CAYNNNNRTG 1 cut(s) 95
Sse9I AATT 5 cut(s) 106, 188, 256, 411, 441
SspMI CTAG 5 cut(s) 23, 77, 159, 417, 437
TaaI ACNGT 2 cut(s) 337, 344
TaiI ACGT 1 cut(s) 125
TaqI TCGA 1 cut(s) 502
TaqII GACCGA 1 cut(s) 386
TasI AATT 5 cut(s) 106, 188, 256, 411, 441
TatI WGTACW 1 cut(s) 176
TfiI GAWTC 2 cut(s) 100, 139
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TseI GCWGC 2 cut(s) 263, 459
XapI RAATTY 2 cut(s) 106, 441
XbaI TCTAGA 1 cut(s) 436
XspI CTAG 5 cut(s) 23, 77, 159, 417, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.